BAC Information

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BAC

Clone NameB6Ng01-294K16
Chromosome5 (Build37)
Map Location 84,676,589 - 84,677,732
singlet/doubletsinglet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294K16.bB6Ng01-294K16.g
ACCGA090736GA090737
length1,147929
definitionB6Ng01-294K16.b B6Ng01-294K16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagcagatgttaaacattacataaataataatttagaaattca
ttgcaataataattatgattgctatcccagtatacaggctcaatatttcc
tctgccaagttaaaatggacttacattttaggatcctacaagtgtgaaac
tagaaatgaacttgaaggtacatgacatataaacacacaaaagggtacaa
ataacactcagaaataactctgcacatcctttatatgtaccataggaaaa
taatagtaactgcaaatagaacacgggctttaaaaaaacgtatctttaga
tataagttaacagaagagttttggaacttttgtttaatcaagttccatat
tgacgtaatgacatgagcaatatagcttacaactttcatcctcaactcct
ttattgtgctccacacaatatatcatgaaactattctccaacagatgaca
actctgatttaaattcatttgatttttaactatttgagtactgatgcatg
tcagtgagtatgtgcatgtgaatgcaggtaccgggagagaccaggataca
ccatcagatctccttgagctgaagttagaggagattgtgtgtcactctaa
taagtaacaatatgagctgttaatcaccaagacacatctcctccttaatc
ccaaaacactacagtgttttgaaaaagaatggcctgcataggctcatata
tttgaatgattaatcaccagggagtggcactatgtgaaaggataagaatg
attattaagtgtggccttgttgggataggtatagccctgttggaagaagt
agatagtgtgctttgcagttttgaaagcccacaagagggaggcttagtct
gtgtctctgtttctgtccttcattgtctctgtctgtctgtctgtctgtct
gtattttttgtctgtttctctctctgggggtgggtatatgtatgtagctc
tcacctactgttgcagtaccttgccgccattctctatgacatggtgatat
ggactgagcctgaggaactctagccagagttaaatgcttttctttcctaa
gaagttacttggacaatggtgtcttctttcacagcatagaaagtgaagtt
ggcatgtagtttaccagccattctaggttatgtttaaggcactttta

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggattccaccccataatc
agcatccaaacgctgacaccattgcatattactagcaagatttttatcga
aagacccagatgtagctgttctcttgtgagactatgccggggccttagca
acaacagaagttggatgctcacagtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84676589_84677732
seq2: B6Ng01-294K16.b_47_1193

seq1  GAATTCTTAGCAGATGTTAAACATTACATAAATAATAATTTAGAAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCAGATGTTAAACATTACATAAATAATAATTTAGAAATTCA  50

seq1  TTGCAATAATAATTATGATTGCTATCCCAGTATACAGGCTCAATATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATAATAATTATGATTGCTATCCCAGTATACAGGCTCAATATTTCC  100

seq1  TCTGCCAAGTTAAAATGGACTTACATTTTAGGATCCTACAAGTGTGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGTTAAAATGGACTTACATTTTAGGATCCTACAAGTGTGAAAC  150

seq1  TAGAAATGAACTTGAAGGTACATGACATATAAACACACAAAAGGGTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGAACTTGAAGGTACATGACATATAAACACACAAAAGGGTACAA  200

seq1  ATAACACTCAGAAATAACTCTGCACATCCTTTATATGTACCATAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTCAGAAATAACTCTGCACATCCTTTATATGTACCATAGGAAAA  250

seq1  TAATAGTAACTGCAAATAGAACACGGGCTTTAAAAAAACGTATCTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTAACTGCAAATAGAACACGGGCTTTAAAAAAACGTATCTTTAGA  300

seq1  TATAAGTTAACAGAAGAGTTTTGGAACTTTTGTTTAATCAAGTTCCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTAACAGAAGAGTTTTGGAACTTTTGTTTAATCAAGTTCCATAT  350

seq1  TGACGTAATGACATGAGCAATATAGCTTACAACTTTCATCCTCAACTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTAATGACATGAGCAATATAGCTTACAACTTTCATCCTCAACTCCT  400

seq1  TTATTGTGCTCCACACAATATATCATGAAACTATTCTCCAACAGATGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGCTCCACACAATATATCATGAAACTATTCTCCAACAGATGACA  450

seq1  ACTCTGATTTAAATTCATTTGATTTTTAACTATTTGAGTACTGATGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATTTAAATTCATTTGATTTTTAACTATTTGAGTACTGATGCATG  500

seq1  TCAGTGAGTATGTGCATGTGAATGCAGGTACCGGGAGAGACCAGGATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGTATGTGCATGTGAATGCAGGTACCGGGAGAGACCAGGATACA  550

seq1  CCATCAGATCTCCTTGAGCTGAAGTTAGAGGAGATTGTGTGTCACTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGATCTCCTTGAGCTGAAGTTAGAGGAGATTGTGTGTCACTCTAA  600

seq1  TAAGTAACAATATGAGCTGTTAATCACCAAGACACATCTCCTCCTTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACAATATGAGCTGTTAATCACCAAGACACATCTCCTCCTTAATC  650

seq1  CCAAAACACTACAGTGTTTTGAAAAAGAATGGCCTGCATAGGCTCATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACACTACAGTGTTTTGAAAAAGAATGGCCTGCATAGGCTCATATA  700

seq1  TTTGAATGATTAATCACCAGGGAGTGGCACTATGTGAAAGGATAAGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGATTAATCACCAGGGAGTGGCACTATGTGAAAGGATAAGAATG  750

seq1  ATTATTAAGTGTGGCCTTGTTGGGATAGGTATAGCCCTGTTGGAAGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAGTGTGGCCTTGTTGGGATAGGTATAGCCCTGTTGGAAGAAGT  800

seq1  AGATAGTGTGCTTTGCAGTTTTGAAAGCCCACAAGAGGGAGGCTTAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGTGCTTTGCAGTTTTGAAAGCCCACAAGAGGGAGGCTTAGTCT  850

seq1  GTGTCTCTGTTTCTGTCCTTCATTGTCTCTGTCTGTCTGTCTGTCTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTGTTTCTGTCCTTCATTGTCTCTGTCTGTCTGTCTGTCTGTCT  900

seq1  GTATTTTTTGTTCTGTTTCTCTCTCTGTGGGTGGGTATATGTATGTAGCT  950
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  GTATTTTTTG-TCTGTTTCTCTCTCTGGGGGTGGGTATATGTATGTAGCT  949

seq1  CTCACCTACTGTTGCAGTACCTTGCCGCCATTCTCTATGACATGGTGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCACCTACTGTTGCAGTACCTTGCCGCCATTCTCTATGACATGGTGAT-  998

seq1  ATGGACTGAGCCTGAGGAACTCTAAGCCCAGAGTTAAATGC-TTTCTTTC  1049
      ||||||||||||||||||||||||   |||||||||||||| ||||||||
seq2  ATGGACTGAGCCTGAGGAACTCTA--GCCAGAGTTAAATGCTTTTCTTTC  1046

seq1  CTAAG-AGTTACCTTGGAC-ATGGTGTCT--CTTCACAGCAATAGAAAGT  1095
      ||||| ||||| ||||||| |||||||||   |||||||| |||||||||
seq2  CTAAGAAGTTA-CTTGGACAATGGTGTCTTCTTTCACAGC-ATAGAAAGT  1094

seq1  GAAGGTGGCATGTAG-TTAACAG-CATCCTAAGTTATG--TAAAGCACTT  1141
      |||| |||||||||| ||| ||| ||| ||| ||||||  ||| ||||||
seq2  GAAGTTGGCATGTAGTTTACCAGCCATTCTAGGTTATGTTTAAGGCACTT  1144

seq1  TTA  1144
      |||
seq2  TTA  1147


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