BAC Information

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BAC

Clone NameB6Ng01-295L19
Chromosome5 (Build37)1 (Build37)
Map Location 7,627,032 - 7,627,97316,479,670 - 16,480,071
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295L19.bB6Ng01-295L19.g
ACCGA091528GA091529
length944920
definitionB6Ng01-295L19.b B6Ng01-295L19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,627,032 - 7,627,973)(16,479,670 - 16,480,071)
sequence
gaattcagtcaaacggtcatctggaagaaaaatagagtgcttgtaccaat
actttcaggagtccaacatatttgcattatttttttccttggagtgtttg
tgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtc
tgtgtgtgtgtgcatgatatgttcacatgtgcatacaggtgtacatttta
catttatgtatgtgattgtggaagttagacacctttattgctcaccacat
aatattttagaatgtgtttatttatttattattaatttatgtatctgtct
cttcctgtgagtgtatgtactggtatgtgaatgtaagcatgggtgaaggc
cagaagaaaacatcacacattttttctctgtatcactttgcctattcatt
taagacaaagtctctccttgaatctggggcttacattttccacgttgaac
tgaaatctagtaagtttctccattctccagcagcttaaaactgagtttat
cagtgtgaccagatgcctggtttgttttgtaggtccaggggtctaaattt
ctatccttatgactgcacagaaaatgctcttaacttctgatgcagctctc
tagcctctttattttgttgaataatccaagagaatgaagaactcatgaat
tggctggccagtgaacttcagaaattcatctcacccaccccatcatggga
gtcacagccacatagcaatgtgtcctgcaatgctagggatctcaatgcag
tcctcctgtttccactgaaaaaatgtcactgaaggatctcttcagtctct
tcacgtccattttcaaagataagatatattcaacactcagtcacttcttc
agatgggtcatttcagtctcataggaagaatacctgccttagagtcagtt
cagcgatgctttgaattccaggtctggccacttgcttgtaagag

gaattccttactcataatatattttctccctatgcccttacttttatgtt
tttcttgagttcagatctgtctaaaaacagtttccccaatttctttatcc
aagcacttatacatcattcagaatacatgaccacatggtaaaagctacac
cacaagtttacacataagttcaaatcataaattgaataagaagttaacaa
cagagaatgtttacatgcatatccactttgagtaattatctgactaaaca
ttcatcatctgttacaaactcaagaggttcataaaaagttaaaaaccata
acttctatagctaagttattagtgaagttttatatagatagatccagtaa
atattttatcttctgtcctttcacttatagtaaatccttatttccctttt
atgaactttggttaattgttttacaatttcttggaatgggctctaagttg
taagtgcctgctagctatctcagaagcaattaactagtgatgcttgaaga
ctggttgagttaatacagttttgacatcagaaaggacttactagtaatcc
tattataaaagagcttaataattacaagtataacttttggaattcttata
gtatcatccttaagaattaagaagtatctatatagtatcactacaagata
ttaaatctttgttgttctgcagaaatcttctcaaaagggtttgttaatag
ctagtgattgttatatatatacatatgtatgtatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatagatacatatatgtacagagagag
agacacacacactctatactcactcttgattatatgtttatatatatgtg
aaatatattatatgtaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_7627032_7627973
seq2: B6Ng01-295L19.b_46_989 (reverse)

seq1  CTCTTAC-AGCAAGT-GCCAGACCTGGAATTCAAAGCATCGCTGAACTGA  48
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTTACAAGCAAGTGGCCAGACCTGGAATTCAAAGCATCGCTGAACTGA  50

seq1  CTCTAAAGCAGGTATTCTTCCTATGAGACTTGAAATGACCCATCTGAGGA  98
      |||||| |||||||||||||||||||||| ||||||||||||||||| ||
seq2  CTCTAAGGCAGGTATTCTTCCTATGAGAC-TGAAATGACCCATCTGAAGA  99

seq1  GGTGACTGAGTGTTTGAATATATCTTATCTTTG-AAATGGACGTGAAGAG  147
       ||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  AGTGACTGAGTG-TTGAATATATCTTATCTTTGAAAATGGACGTGAAGAG  148

seq1  ACTGAAGAGATCCTTCAGTGACATTTTTTCAGTGGAAACAGGAGGACCTG  197
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTGAAGAGATCCTTCAGTGACATTTTTTCAGTGGAAACAGGAGGA-CTG  197

seq1  CATTGAGATCCCTAGCATTGCAGGACACATTGCTATGTGGCTGTGACTCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGATCCCTAGCATTGCAGGACACATTGCTATGTGGCTGTGACTCC  247

seq1  CATGAT-GGGTGGGTGAGATGAATTTCTGAAGTTCACTGGCCAGCCAATT  296
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGGGTGGGTGAGATGAATTTCTGAAGTTCACTGGCCAGCCAATT  297

seq1  CATGAGTTCTTCATTCTCTTGGATTATTCAAC-AAATAAAGAGGCTAGAG  345
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATGAGTTCTTCATTCTCTTGGATTATTCAACAAAATAAAGAGGCTAGAG  347

seq1  AGCTGCATCAGAAGTTAAGAGCATTTTCTGTGCAGTCATAAGGATAGAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATCAGAAGTTAAGAGCATTTTCTGTGCAGTCATAAGGATAGAAA  397

seq1  TTTAGACCCCTGGACCTACAAAACAAACCAGGCATCTGGTCACACTGATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACCCCTGGACCTACAAAACAAACCAGGCATCTGGTCACACTGATA  447

seq1  AACTCAGTTTTAAGCTGCTGGAGAATGGAGAAACTTACTAGATTTCAGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTTTTAAGCTGCTGGAGAATGGAGAAACTTACTAGATTTCAGTT  497

seq1  CAACGTGGAAAATGTAAGCCCCAGATTCAAGGAGAGACTTTGTCTTAAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTGGAAAATGTAAGCCCCAGATTCAAGGAGAGACTTTGTCTTAAAT  547

seq1  GAATAGGCAAAGTGATACAGAGAAAAAATGTGTGATGTTTTCTTCTGGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCAAAGTGATACAGAGAAAAAATGTGTGATGTTTTCTTCTGGCC  597

seq1  TTCACCCATGCTTACATTCACATACCAGTACATACACTCACAGGAAGAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCATGCTTACATTCACATACCAGTACATACACTCACAGGAAGAGA  647

seq1  CAGATACATAAATTAATAATAAATAAATAAACACATTCTAAAATATTATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACATAAATTAATAATAAATAAATAAACACATTCTAAAATATTATG  697

seq1  TGGTGAGCAATAAAGGTGTCTAACTTCCACAATCACATACATAAATGTAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCAATAAAGGTGTCTAACTTCCACAATCACATACATAAATGTAA  747

seq1  AATGTACACCTGTATGCACATGTGAACATATCATGCACACACACACAGAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACACCTGTATGCACATGTGAACATATCATGCACACACACACAGAC  797

seq1  ACACACACACAGACACACACACACAGACACACACACACACACACACACAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGACACACACACACAGACACACACACACACACACACACAA  847

seq1  ACACTCCAAGGAAAAAAATAATGCAAATATGTTGGACTCCTGAAAGTATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCAAGGAAAAAAATAATGCAAATATGTTGGACTCCTGAAAGTATT  897

seq1  GGTACAAGCACTCTATTTTTCTTCCAGATGACCGTTTGACTGAATTC  942
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAGCACTCTATTTTTCTTCCAGATGACCGTTTGACTGAATTC  944


seq1: chr1_16479670_16480071
seq2: B6Ng01-295L19.g_786_983 (reverse)

seq1  GTATTACATATAATATAAAGGTGTTAGTGATATATATGATATATGTATAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AACATATATATTATAAGGATGTTAGTGTTTTATGTATATATAAGAATGTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTATTA-GTGTTATATAGTTAACACAAGGATGTTAGAGTCAGTGTTTTA  149
       ||||||  | | ||||| || ||| |                   | ||
seq2  -GTATTACATATAATATATTTCACATA-------------------TATA  30

seq1  TGAATATAAAACATAAGAATATTAGTGT-TAGTGTGTGTGTATGTGTATG  198
      | || ||| ||   ||||   | ||| |  ||||||||||| | | | | 
seq2  TAAACATATAA-TCAAGA--GTGAGTATAGAGTGTGTGTGTCTCTCTCTC  77

seq1  TGTATATATATGTGCGTGTTTTATATATATGTGAGATATATATACATATA  248
      |||| ||||||||      | |||||||||     ||||||||| |||||
seq2  TGTACATATATGT-----ATCTATATATAT-----ATATATATATATATA  117

seq1  TATATATCAATCATAATGATGTTAATGTGATATATATATATAAAATAGGA  298
      |||||||                      |||||||||||||        
seq2  TATATAT----------------------ATATATATATATA--------  137

seq1  TGCCAGTGTTTGTGTTATATAGATAACATAAGGATGTTACAGTTAGTGTC  348
                     |||||| |||                         
seq2  ---------------TATATATATA-------------------------  147

seq1  TTTCATTCATATATATATATATATATATATATATATATATATATACATAT  398
          ||  ||||||||||||||||||||||||||||||||||||||||| 
seq2  ---TATATATATATATATATATATATATATATATATATATATATACATAC  194

seq1  ATAT  402
      ||||
seq2  ATAT  198


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