BAC Information

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BAC

Clone NameB6Ng01-296A14
Chromosome5 (Build37)
Map Location 128,139,229 - 128,263,037
singlet/doubletdoublet
Overlap geneGlt1d1
Upstream geneLOC100040327, Tmem132c, Slc15a4
Downstream geneTmem132d, Fzd10, LOC100040398, Piwil1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296A14.bB6Ng01-296A14.g
ACCGA091748GA091749
length3701,125
definitionB6Ng01-296A14.b B6Ng01-296A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,139,229 - 128,139,597)(128,261,933 - 128,263,037)
sequence
ttttaggtagattttggaggagagactttgattcatgtaccgtgaacagc
agatgatgtgttttgagcaatgtagtcttaatcttgctggaggaaaagcc
agctttggttttgaactttatgtgcagacttaactcaggctgtactttgg
gtaattgtacctaattagtccaaagcgagaccagatatcagtaatcctag
tttgaaagataagattacgggtgcttccacgtccctggggctttctttcc
tctttctcctcctcctcctccctcacctcttcctcctccctcccctcctc
ctcctccccttctctccctcctcctccccgctcccttctcctccttattc
tcttctttttgaggccaggg

gaattccccaccccgcccttgcttttctagaaaccatagagaacctgttt
tgtgatgggctctgccacccctcatgttgggtctcctgtccaagaatttg
tcatcagggcattttaagacagagccgtctgttcagtgcaggttggctct
tttgaactgcaagagacgagtgtcaggaacgtgggcttgcgcatgcttgg
acagcatgagaggtgagcgggtatgggtaggtgtatgcatgtgtataagg
gtatgcgtgcatctgcgtgtgggtgtgcacatagtgggtagctgtgcatc
tgtggaggctgtgtgtgtgtctgtgggtgcgcgtgcgggtgtagctatcc
ttgcaagcacttggacccccaaatcatccccaaaaggattagcattgctt
aacgtcaaaatgtctctacgatccctcaagatgctgagtctatggagatg
gtaagggaggcatggtcaggagatcccccaccccaatcctggtctcacta
tgaagtgaggatgatgggttgaggagtagccgtgactttgaagggtggag
gagactagtctctgggtaattctaacactgtcatttccttctcttttctt
tcccgttattttctgtctttattgccttgtctctttcctcatctccctcc
cctctccctcctcttattattcttacccggatcatataagagaacctctc
tagaggactgtgagtcccatctcctctccttcccctcaggccctctcccc
tctgactgtggtgctaatccttttgttctgacagccagcaagccacccag
ctcccagctcccagtagactcttctttgtttgggtaggtaactttcacca
ctgcaaacctttgctttcccattgtccactttctgatttctttccccttt
cttacccatgtgacatttccttgactactgcagcagaatgcctgttcgca
aaatccctccacgtgtaggaatgttttgtaaggattgtaagaatgttaat
ctattattttataaactttactgaactgtaaataataaaacatgcactct
gcagcttcaatgggctggcctttgtctttctacatgctgaacccacaaaa
atacacacttcccctaaatccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_128139229_128139597
seq2: B6Ng01-296A14.b_53_422

seq1  TTTTAGGTAGATTTTGGAGGAGAGACTTTGATTCATGTACCGTGAACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTAGATTTTGGAGGAGAGACTTTGATTCATGTACCGTGAACAGC  50

seq1  AGATGATGTGTTTTGAGCAATGTAGTCTTAATCTTGCTGGAGGAAAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGTGTTTTGAGCAATGTAGTCTTAATCTTGCTGGAGGAAAAGCC  100

seq1  AGCTTTGGTTTTGAACTTTATGTGCAGACTTAACTCAGGCTGTACTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGTTTTGAACTTTATGTGCAGACTTAACTCAGGCTGTACTTTGG  150

seq1  GTAATTGTACCTAATTAGTCCAAAGCGAGACCAGATATCAGTAATCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGTACCTAATTAGTCCAAAGCGAGACCAGATATCAGTAATCCTAG  200

seq1  TTTGAAAGATAAGATTACGGGTGCTTCCACGTCCCTGGGGCTTTCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGATAAGATTACGGGTGCTTCCACGTCCCTGGGGCTTTCTTTCC  250

seq1  TCTTTCTCCTCCTCCTCCTCCCTCACCTCTTCCTCCTCCCTCCCCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCTCCTCCTCCTCCCTCACCTCTTCCTCCTCCCTCCCCTCCTC  300

seq1  CTCCTCCCCTTCTCTCCCTCCTCCTCCCCGCTCCCTCCTCCTCCTTCTTT  350
      |||||||||||||||||||||||||||||||||||| ||||||||| || 
seq2  CTCCTCCCCTTCTCTCCCTCCTCCTCCCCGCTCCCTTCTCCTCCTTATTC  350

seq1  TCTTCTTTTTGA-GCCAGGG  369
      |||||||||||| |||||||
seq2  TCTTCTTTTTGAGGCCAGGG  370


seq1: chr5_128261933_128263037
seq2: B6Ng01-296A14.g_71_1195 (reverse)

seq1  GGAGGGA--TAGGGG-AGTGTGTGTGTGTGTGGG-TCAGCATGTAGAAAG  46
      |||||||  |||||| ||||||| | | |||||| |||||||||||||||
seq2  GGAGGGATTTAGGGGAAGTGTGTATTTTTGTGGGTTCAGCATGTAGAAAG  50

seq1  ACAAAGGCCAGCC--ATGAAGCTGCAGAGTGCATGTTTTA-TATTTACAG  93
      |||||||||||||   |||||||||||||||||||||||| |||||||||
seq2  ACAAAGGCCAGCCCATTGAAGCTGCAGAGTGCATGTTTTATTATTTACAG  100

seq1  -TCAGT-AAGTTTATAAA--TATAGATT-ACATTCTTACAATC--TACAA  136
       ||||| |||||||||||   ||||||| ||||||||||||||  |||||
seq2  TTCAGTAAAGTTTATAAAATAATAGATTAACATTCTTACAATCCTTACAA  150

seq1  TACATT-CTACACGTGGAGGGA-TTTGCGAACAGGCA-TCTGCTGCAGTA  183
       ||||| ||||||||||||||| |||||||||||||| ||||||||||||
seq2  AACATTCCTACACGTGGAGGGATTTTGCGAACAGGCATTCTGCTGCAGTA  200

seq1  GTCAAGGAAATGTCACATGGGTAAG-AAGGGGAAAGAAATCAGAAAGTGG  232
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCAAGGAAATGTCACATGGGTAAGAAAGGGGAAAGAAATCAGAAAGTGG  250

seq1  ACAAT-GGAAAGCAAAGGTTTGCAGTGGTG-AAGTTACCTACCCAAACAA  280
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAATGGGAAAGCAAAGGTTTGCAGTGGTGAAAGTTACCTACCCAAACAA  300

seq1  AGAAGAGTCTACTGGGAGCTGGGAGCTGGGTGGCTTGCTGGCTGTCAGAA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTCTACTGGGAGCTGGGAGCTGGGTGGCTTGCTGGCTGTCAGAA  350

seq1  CAAAAGGATTAGCACCACAGTCAGAGGGGAGAGGGCCTGAGGGGAAGGAG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGATTAGCACCACAGTCAGAGGGGAGAGGGCCTGAGGGGAAGGAG  400

seq1  AGGAGATGGGACTCACAGTCCTCTAGAGAGGTTCTCTTATATGATCCGGG  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGGGACTCACAGTCCTCTAGAGAGGTTCTCTTATATGATCCGGG  450

seq1  TAAGAATAATAAGAGGAGGGAGAGGGGAGGGAGATGAGGAAAGAGACAAG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATAATAAGAGGAGGGAGAGGGGAGGGAGATGAGGAAAGAGACAAG  500

seq1  GCAATAAAGACAGAAAATAACGGGAAAGAAAAGAGAAGGAAATGACAGTG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGACAGAAAATAACGGGAAAGAAAAGAGAAGGAAATGACAGTG  550

seq1  TTAGAATTACCCAGAGACTAGTCTCCTCCACCCTTCAAAGTCACGGCTAC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTACCCAGAGACTAGTCTCCTCCACCCTTCAAAGTCACGGCTAC  600

seq1  TCCTCAACCCATCATCCTCACTTCATAGTGAGACCAGGATTGGGGTGGGG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACCCATCATCCTCACTTCATAGTGAGACCAGGATTGGGGTGGGG  650

seq1  GATCTCCTGACCATGCCTCCCTTACCATCTCCATAGACTCAGCATCTTGA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTGACCATGCCTCCCTTACCATCTCCATAGACTCAGCATCTTGA  700

seq1  GGGATCGTAGAGACATTTTGACGTTAAGCAATGCTAATCCTTTTGGGGAT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCGTAGAGACATTTTGACGTTAAGCAATGCTAATCCTTTTGGGGAT  750

seq1  GATTTGGGGGTCCAAGTGCTTGCAAGGATAGCTACACCCGCACGCGCACC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGGGTCCAAGTGCTTGCAAGGATAGCTACACCCGCACGCGCACC  800

seq1  CACAGACACACACACAGCCTCCACAGATGCACAGCTACCCACTATGTGCA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACACACACAGCCTCCACAGATGCACAGCTACCCACTATGTGCA  850

seq1  CACCCACACGCAGATGCACGCATACCCTTATACACATGCATACACCTACC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACGCAGATGCACGCATACCCTTATACACATGCATACACCTACC  900

seq1  CATACCCGCTCACCTCTCATGCTGTCCAAGCATGCGCAAGCCCACGTTCC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCGCTCACCTCTCATGCTGTCCAAGCATGCGCAAGCCCACGTTCC  950

seq1  TGACACTCGTCTCTTGCAGTTCAAAAGAGCCAACCTGCACTGAACAGACG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCGTCTCTTGCAGTTCAAAAGAGCCAACCTGCACTGAACAGACG  1000

seq1  GCTCTGTCTTAAAATGCCCTGATGACAAATTCTTGGACAGGAGACCCAAC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTTAAAATGCCCTGATGACAAATTCTTGGACAGGAGACCCAAC  1050

seq1  ATGAGGGGTGGCAGAGCCCATCACAAAACAGGTTCTCTATGGTTTCTAGA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGGTGGCAGAGCCCATCACAAAACAGGTTCTCTATGGTTTCTAGA  1100

seq1  AAAGCAAGGGCGGGGTGGGGAATTC  1105
      |||||||||||||||||||||||||
seq2  AAAGCAAGGGCGGGGTGGGGAATTC  1125


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