BAC Information

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BAC

Clone NameB6Ng01-296K04
Chromosome5 (Build37)
Map Location 19,626,411 - 19,739,613
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296K04.bB6Ng01-296K04.g
ACCGA092193GA092194
length1,167926
definitionB6Ng01-296K04.b B6Ng01-296K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,738,442 - 19,739,613)(19,626,411 - 19,627,334)
sequence
gaattctttacagcaatacacttctaagttcttagcaagttcttcagagt
aaaagtgtttgattatattaaacatatttgagaaattaggattactaatt
atcaaaaagatttaaatgagaaaacaatccagacttttcatgcaaagaca
gactaggcaatctaaaaccagcatttaaaagatatatataaaactttatt
ggtgtcaattttataaaactcatttaagaaatgacttgaaacttatgtca
agtttcttcccttgaaaagcattatatccagaatgtattataaaacatga
ctttttctgaattcactattttttaaagatcaagttcaaaggactagtta
atgtcagttgaaatgtaagtttatggaggcagcagttaaaactgatttcc
ttttctgtaggaacttaagtaaactcaatccccagatcctgaatccagat
atgaagccatcaagtcagttgatgcagatgtaattattatattgtgaaaa
tttaagtcgtttttacaaaacagagaagaaaacaccaatctaatactatc
aagctggaagtagctagtcggaaaattttagccggcatggatctgttcac
ttccaactctccaagaaccttagagaagcccaaagctgttactggatagg
tcaggtcttccctctaccttctccatccctggagaaggctttaggaggct
cattagctgagtactatctaagggaactgaacttacagggcaataagcaa
catccttcctgtatatgaaactaagtccttttggaagaaagagaattctt
cttctatagacaggtaagaatctccaagctagacaatcattcccttgcct
gcgagagtttggagcacattttcctggctacacaatgccaggatttcttc
tcctgaacatagcactgggtgatgttcctgagctgagtcgtattttaaat
ttaacagaactactccagcaacaacttttattttgtgcacatgcatgtgt
ttatatttgtgtacatgcacattgttgtgtgatgtgagtatgagtgtctg
tgtgcagcgtgggcaggtgtatttgtgtgcaagatctcatatgtgtgtat
tcatgcgccacacacaagaggcagatgttgacatgataattctcaatcag
tcaccacctactttccg

gaattcttaattgtttgttttatggttgttgttttgtgtgacttctgttt
cattttttttttatcttattggtgttttgcttgctttgattttcttttct
tttttttttttctcttttgagaaaggtagggatgtaggtaatgagaggga
aaagcagagattaaggaaagggagaaggaaaggagaaaaggaagtttgac
gggtagggaggtagagactatctgggagggtttgaacaagggaaactatg
aaaataaattgtatgaaaaatcatttaaaaattatatgttaatgaaagtt
gaatggattgtctaaggttccctctttatattcatccatggtttctaccc
tctgcagctgcctttacaccgagaggagaccacacctcaactgaagctga
gctttcagaaaaggatgctgaactcactctgtttttgctttgttttctaa
agatcgcattctctccttggttctaaaactagtatttctcctctgttacc
tatcacacgggggagctgctgacaggtcagctgtcatccaaccatttcca
ttcctccttcattctatcgcttcatgtttgggtgttgttcacaagcttca
agaatctcagactttttttttttttttttccattttttattaggtattta
gctcatttacatttccaatgctataccaaaagtcccccttacccacccac
ccccactcccctacccacccactccccccctttggccctggcgttcccct
gtaccggggcacacaaagtctgcgtgtccaatgggcctctctttccagtg
atggccgactaggccatctttgatacatatgcagctagagtcaagagctt
caggggtactggtaagttccataatgttgcttcaacctatagaggtagaa
taatccctttagctcttggtactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19738442_19739613
seq2: B6Ng01-296K04.b_45_1211 (reverse)

seq1  CGGAAAGTAAGGTGGTGACTGATTGAGA--TATCATGTCAACATCTGGCC  48
      |||||||| |||||||||||||||||||  |||||||||||||||| |||
seq2  CGGAAAGT-AGGTGGTGACTGATTGAGAATTATCATGTCAACATCT-GCC  48

seq1  TCTTGTGTGT-GCGCATGAATACACACATATGAAGATCTTTGCACACAAA  97
      |||||||||| ||||||||||||||||||||| ||||| |||||||||||
seq2  TCTTGTGTGTGGCGCATGAATACACACATATG-AGATC-TTGCACACAAA  96

seq1  TACACCTGCCCACGCTTGCACACAGACACTCATACTCACAATCACACAAA  147
      ||||||||||||||| ||||||||||||||||||||||| ||||||| ||
seq2  TACACCTGCCCACGC-TGCACACAGACACTCATACTCAC-ATCACAC-AA  143

seq1  CAATGTGCATGTACACAAATATAAACACATGCATGTGCACAAAATAAAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGCATGTACACAAATATAAACACATGCATGTGCACAAAATAAAAG  193

seq1  TTGTTTGCTGGAGTAGTTCTGTTAAATTTAAAATACGACTCAGCTCAGGA  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-TTGCTGGAGTAGTTCTGTTAAATTTAAAATACGACTCAGCTCAGGA  242

seq1  ACATCACCCAGTGCTATGTTCAGGAGAAGAAATCCTGGCATTGTGTAGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCCAGTGCTATGTTCAGGAGAAGAAATCCTGGCATTGTGTAGCC  292

seq1  AGGAAAATGTGCTCCAAACTCTCGCAGGCAAGGGAATGATTGTCTAGCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGTGCTCCAAACTCTCGCAGGCAAGGGAATGATTGTCTAGCTT  342

seq1  GGAGATTCTTACCTGTCTATAGAAGAAGAATTCTCTTTCTTCCAAAAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTCTTACCTGTCTATAGAAGAAGAATTCTCTTTCTTCCAAAAGGA  392

seq1  CTTAGTTTCATATACAGGAAGGATGTTGCTTATTGCCCTGTAAGTTCAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTCATATACAGGAAGGATGTTGCTTATTGCCCTGTAAGTTCAGT  442

seq1  TCCCTTAGATAGTACTCAGCTAATGAGCCTCCTAAAGCCTTCTCCAGGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAGATAGTACTCAGCTAATGAGCCTCCTAAAGCCTTCTCCAGGGA  492

seq1  TGGAGAAGGTAGAGGGAAGACCTGACCTATCCAGTAACAGCTTTGGGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGGTAGAGGGAAGACCTGACCTATCCAGTAACAGCTTTGGGCTT  542

seq1  CTCTAAGGTTCTTGGAGAGTTGGAAGTGAACAGATCCATGCCGGCTAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGTTCTTGGAGAGTTGGAAGTGAACAGATCCATGCCGGCTAAAA  592

seq1  TTTTCCGACTAGCTACTTCCAGCTTGATAGTATTAGATTGGTGTTTTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGACTAGCTACTTCCAGCTTGATAGTATTAGATTGGTGTTTTCTT  642

seq1  CTCTGTTTTGTAAAAACGACTTAAATTTTCACAATATAATAATTACATCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTGTAAAAACGACTTAAATTTTCACAATATAATAATTACATCT  692

seq1  GCATCAACTGACTTGATGGCTTCATATCTGGATTCAGGATCTGGGGATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAACTGACTTGATGGCTTCATATCTGGATTCAGGATCTGGGGATTG  742

seq1  AGTTTACTTAAGTTCCTACAGAAAAGGAAATCAGTTTTAACTGCTGCCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTTAAGTTCCTACAGAAAAGGAAATCAGTTTTAACTGCTGCCTC  792

seq1  CATAAACTTACATTTCAACTGACATTAACTAGTCCTTTGAACTTGATCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTTACATTTCAACTGACATTAACTAGTCCTTTGAACTTGATCTT  842

seq1  TAAAAAATAGTGAATTCAGAAAAAGTCATGTTTTATAATACATTCTGGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAGTGAATTCAGAAAAAGTCATGTTTTATAATACATTCTGGAT  892

seq1  ATAATGCTTTTCAAGGGAAGAAACTTGACATAAGTTTCAAGTCATTTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTTTTCAAGGGAAGAAACTTGACATAAGTTTCAAGTCATTTCTT  942

seq1  AAATGAGTTTTATAAAATTGACACCAATAAAGTTTTATATATATCTTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTTTTATAAAATTGACACCAATAAAGTTTTATATATATCTTTTA  992

seq1  AATGCTGGTTTTAGATTGCCTAGTCTGTCTTTGCATGAAAAGTCTGGATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGTTTTAGATTGCCTAGTCTGTCTTTGCATGAAAAGTCTGGATT  1042

seq1  GTTTTCTCATTTAAATCTTTTTGATAATTAGTAATCCTAATTTCTCAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCATTTAAATCTTTTTGATAATTAGTAATCCTAATTTCTCAAAT  1092

seq1  ATGTTTAATATAATCAAACACTTTTACTCTGAAGAACTTGCTAAGAACTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATATAATCAAACACTTTTACTCTGAAGAACTTGCTAAGAACTT  1142

seq1  AGAAGTGTATTGCTGTAAAGAATTC  1172
      |||||||||||||||||||||||||
seq2  AGAAGTGTATTGCTGTAAAGAATTC  1167


seq1: chr5_19626411_19627334
seq2: B6Ng01-296K04.g_69_994

seq1  GAATTCTTAATTGTTTGTTTTATGGTTGTTGTTTTGTGTGACTTCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATTGTTTGTTTTATGGTTGTTGTTTTGTGTGACTTCTGTTT  50

seq1  CATTTTTTTTTTATCTTATTGGTGTTTTGCTTGCTTTGATTTTCTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTTATCTTATTGGTGTTTTGCTTGCTTTGATTTTCTTTTCT  100

seq1  TTTTTTTTTTTCTCTTTTGAGAAAGGTAGGGATGTAGGTAATGAGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCTCTTTTGAGAAAGGTAGGGATGTAGGTAATGAGAGGGA  150

seq1  AAAGCAGAGATTAAGGAAAGGGAGAAGGAAAGGAGAAAAGGAAGTTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGATTAAGGAAAGGGAGAAGGAAAGGAGAAAAGGAAGTTTGAC  200

seq1  GGGTAGGGAGGTAGAGACTATCTGGGAGGGTTTGAACAAGGGAAACTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGAGGTAGAGACTATCTGGGAGGGTTTGAACAAGGGAAACTATG  250

seq1  AAAATAAATTGTATGAAAAATCATTTAAAAATTATATGTTAATGAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATTGTATGAAAAATCATTTAAAAATTATATGTTAATGAAAGTT  300

seq1  GAATGGATTGTCTAAGGTTCCCTCTTTATATTCATCCATGGTTTCTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATTGTCTAAGGTTCCCTCTTTATATTCATCCATGGTTTCTACCC  350

seq1  TCTGCAGCTGCCTTTACACCGAGAGGAGACCACACCTCAACTGAAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTGCCTTTACACCGAGAGGAGACCACACCTCAACTGAAGCTGA  400

seq1  GCTTTCAGAAAAGGATGCTGAACTCACTCTGTTTTTGCTTTGTTTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGAAAAGGATGCTGAACTCACTCTGTTTTTGCTTTGTTTTCTAA  450

seq1  AGATCGCATTCTCTCCTTGGTTCTAAAACTAGTATTTCTCCTCTGTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGCATTCTCTCCTTGGTTCTAAAACTAGTATTTCTCCTCTGTTACC  500

seq1  TATCACACGGGGGAGCTGCTGACAGGTCAGCTGTCATCCAACCATTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACACGGGGGAGCTGCTGACAGGTCAGCTGTCATCCAACCATTTCCA  550

seq1  TTCCTCCTTCATTCTATCGCTTCATGTTTGGGTGTTGTTCACAAGCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTTCATTCTATCGCTTCATGTTTGGGTGTTGTTCACAAGCTTCA  600

seq1  AGAATCTCAGACTTTTTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCAGACTTTTTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTA  650

seq1  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCAC  700

seq1  CCCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCT  750

seq1  GTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTG  800

seq1  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGC-  849
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  ATGGCCGACTAGGCCATC-TTTGATACATATGCAGCTAGAGTCAAGAGCT  849

seq1  TCAGGGGTACTGGTTAGTT-CATAATGTTG-TTCCACCTATAG-GGTTGA  896
      |||||||||||||| |||| |||||||||| ||| |||||||| ||| ||
seq2  TCAGGGGTACTGGTAAGTTCCATAATGTTGCTTCAACCTATAGAGGTAGA  899

seq1  A-GATCCCTTTAGCTCCTTGGGTACTTTC  924
      |  |||||||||||||  | |||||||||
seq2  ATAATCCCTTTAGCTC--TTGGTACTTTC  926


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