BAC Information

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BAC

Clone NameB6Ng01-296K05
Chromosome5 (Build37)
Map Location 96,025,009 - 96,026,187
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187
Downstream geneEG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296K05.bB6Ng01-296K05.g
ACCGA092195GA092196
length1,1831,175
definitionB6Ng01-296K05.b B6Ng01-296K05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttctacatgcagacatccagttagaacagcaccatttgttgaag
atcttttcttttttgttgtatggttttgccttctttgtcaaaaaccaata
tcaataattgtagtggtttatttctgggtcctcaatttggatcaacctct
ctgtcttgataccaatgattcaaggtttattactattactctctactacc
acttgaagtcagagatggtgatgactccagaacttttattatacaggact
gctttaattatcttgtttatttttccatatgaagattataatagttcttt
ccatgtctgtaaataattgtgttgggattttgacaggaattgcattgaat
ctgtagattgcttttggtattacagctattttcactagattgaggctacc
aatccatgtatgtggagatttttccatgttctgatatcttcctcaatttc
tttatccaatttctttcaattttctttcttcaaaaacttgaagttcttgt
cattggtgtcttacacttgcttgagtagagttacaccaagatattttgta
agtattataaagggtaatgtttctataatttctttctaagtcagtttatc
atttgtctaaaaaagggttatttttttttacagtgagttttgttatctag
ccattttgctgaaggtgtttatcagttgtaggaattctctgatagaattt
tggagatctcttatctatactatcatatgatctgtgactagtgatacttt
ttcttcgtttccaattttgtccccttgaaatcctttagtttttgctctag
ctagaatttcaagtactgtgttgagtagatagggagagagtgggaagact
tgttgctggttttactgagattgctttaggtttctctttttaatttgatg
ttgcctattggtttgttgtatgttgcttctactatgttacatatccaaca
tgtatcctgataacctttagacttttacataataaggctgtttttgtcaa
aggctttcttatcatacagtggatatagatgttcctgttgatattttaaa
ggttgtaattttattggtgaaaatcattgctggaatttcatatgttggaa
ctctccttgcatcctgggaagaaagccctatcactacggtggaatttatg
tctctggatggttcctggaactcagattcctac
gaattccctggtcatgagccccatccagctcaaagtctcttttctcttgg
tcccattttactctgaaaatctttctttctactttggatttcttctttct
tttccaaggagatctcattagcattttggagaaagcctttttttcttgac
ccaaggagttttactgcagatattttaattcatgaagccagaacaagagg
ctgagctgccaatcaaacacccagctcccattgttggtatttgaatggga
gacacagaattacattatgtagtttgggggtcatccttcatcagttcact
gaaacttgcaccaccacccttgatagctctcctgctcttctgtacatgct
gactgtcttagttcatttgtgaattggtggatcagctagggagtgtgcat
gtagagtgggtggactgtaaactgaagtggtctctgtcagtacagctgtg
ggtaccactactgaactcaggcttgacagcaagtgccgttcccctctgag
ccatctcactggctcttaagctcccttgaggttaatttaagaattttatt
ttgtgttttgggtacttttttgtttggtttttgtctctctgtctgtttgt
ttgtttgattgatttttgacagggttggtcagtttacccttctctggttc
tttctgaactcaagttgtatactagagtaaccttgacctcagaacttctc
ctgcatctacctacctaatcctgggttttaagtctgtacctgcaccatct
gggaaatttcatcttgtttgtgtgtttgttttgttgtttttagacagggt
ctctttgtttaagagccctaaatgtcccataagccactctgaggagcagt
ctggcctcgaaatcaaagatgctcctgcctcttactgtagtgctgggatt
tatgccctgtgccaccctgcccagctctggtttaattttgtgaaagatcc
tcactccatagatttcactggtttggggtttagttattaagataagggta
gctctgactcctggatcagtcaaacttgactcctgagggaggcatcaatg
tgtatgctgccattctcagtataaatataatgtttagtaggattggttca
tggtaagggtgcctttggcctacactatgatgccagccctctcatgactg
gctccccttgaagaggtcaggaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96025009_96026187
seq2: B6Ng01-296K05.g_67_1241 (reverse)

seq1  CGTT-CTGAC--CTTCTAGGGGAG-CAGCCATGAGAGGGCTGCCCATTCA  46
      |||| |||||  |||| ||||||| ||| ||||||||||||| |   |||
seq2  CGTTCCTGACCTCTTCAAGGGGAGCCAGTCATGAGAGGGCTGGC--ATCA  48

seq1  TAGTTGTAGGC--AAAGCACCCCTACACATAGAACAAATCTTACTAAAAC  94
      ||| |||||||  || |||||| ||| ||| |||| |||| |||| ||||
seq2  TAG-TGTAGGCCAAAGGCACCCTTAC-CAT-GAACCAATCCTACT-AAAC  94

seq1  AATATATTTATACTGAGAATGGCAGCATACACATTGATTCCCTCCCCTCA  144
      | |||||||||||||||||||||||||||||||||||| ||   ||||||
seq2  ATTATATTTATACTGAGAATGGCAGCATACACATTGATGCC--TCCCTCA  142

seq1  GGAGTCAAAGTTTGACTGATTCAGGGAGTTCAGAGCTACCCTTATCTTAA  194
      |||||| ||||||||||||| || |||| |||||||||||||||||||||
seq2  GGAGTC-AAGTTTGACTGATCCA-GGAG-TCAGAGCTACCCTTATCTTAA  189

seq1  TAACTAAACCCC-AACCAGTGAAATCTATGGAGTGAGGATCTTTCACAAA  243
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAACTAAACCCCAAACCAGTGAAATCTATGGAGTGAGGATCTTTCACAAA  239

seq1  ATTAAACCAGAGCTGGGCAGGGTGGCACAGGGCATAAATCCCAGCACTAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCAGAGCTGGGCAGGGTGGCACAGGGCATAAATCCCAGCACTAC  289

seq1  AGTAAGAGGCAGGAGCATCTTTGATTTCGAGGCCAGACTGCTCCTCAGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAGGCAGGAGCATCTTTGATTTCGAGGCCAGACTGCTCCTCAGAG  339

seq1  TGGCTTATGGGACATTTAGGGCTCTTAAACAAAGAGACCCTGTCTAAAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATGGGACATTTAGGGCTCTTAAACAAAGAGACCCTGTCTAAAAA  389

seq1  CAACAAAACAAACACACAAACAAGATGAAATTTCCCAGATGGTGCAGGTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAACAAACACACAAACAAGATGAAATTTCCCAGATGGTGCAGGTA  439

seq1  CAGACTTAAAACCCAGGATTAGGTAGGTAGATGCAGGAGAAGCTCTGAGG  493
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGACTTAAAACCCAGGATTAGGTAGGTAGATGCAGGAGAAGTTCTGAGG  489

seq1  TCAAGGTTACTCTAGTATACAACTTGAGTTCAGAAAGAACCAGAGAAGGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTACTCTAGTATACAACTTGAGTTCAGAAAGAACCAGAGAAGGG  539

seq1  TAAACTGACCAACCCTGTCAAAAATCAATCAAACAAACAAACAGACAGAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGACCAACCCTGTCAAAAATCAATCAAACAAACAAACAGACAGAG  589

seq1  AGACAAAAACCAAACAAAAAAGTACCCAAAACACAAAATAAAATTCTTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAACCAAACAAAAAAGTACCCAAAACACAAAATAAAATTCTTAA  639

seq1  ATTAACCTCAAGGGAGCTTAAGAGCCAGTGAGATGGCTCAGAGGGGAACG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCTCAAGGGAGCTTAAGAGCCAGTGAGATGGCTCAGAGGGGAACG  689

seq1  GCACTTGCTGTCAAGCCTGAGTTCAGTAGTGGTACCCACAGCTGTACTGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGCTGTCAAGCCTGAGTTCAGTAGTGGTACCCACAGCTGTACTGA  739

seq1  CAGAGACCACTTCAGTTTACAATCCACCCACTCTACATGCACACTCCCTA  793
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGAGACCACTTCAGTTTACAGTCCACCCACTCTACATGCACACTCCCTA  789

seq1  GCTGATCCACCAATTCACAAATGAACTAAGACAGTCAGCATGTACAGAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCCACCAATTCACAAATGAACTAAGACAGTCAGCATGTACAGAAG  839

seq1  AGCAGGAGAGCTATCAAGGGTGGTGGTGCAAGTTTCAGTGAACTGATGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGAGCTATCAAGGGTGGTGGTGCAAGTTTCAGTGAACTGATGAA  889

seq1  GGATGACCCCCAAACTACATAATGTAATTCTGTGTCTCCCATTCAAATAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACCCCCAAACTACATAATGTAATTCTGTGTCTCCCATTCAAATAC  939

seq1  CAACAATGGGAGCTGGGTGTTTGATTGGCAGCTCAGCCTCTTGTTCTGGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGGGAGCTGGGTGTTTGATTGGCAGCTCAGCCTCTTGTTCTGGC  989

seq1  TTCATGAATTAAAATATCTGCAGTAAAACTCCTTGGGTCAAGAAAAAAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAATTAAAATATCTGCAGTAAAACTCCTTGGGTCAAGAAAAAAAG  1039

seq1  GCTTTCTCCAAAATGCTAACGAGATCTCCTTGGAAAAGAAAGAAGAAATC  1093
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTTTCTCCAAAATGCTAATGAGATCTCCTTGGAAAAGAAAGAAGAAATC  1089

seq1  CAAAGTAGAAAGAAAGATTTTCAGAGTAAAATGGGACCAAGAGAAAAGAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGAAAGAAAGATTTTCAGAGTAAAATGGGACCAAGAGAAAAGAG  1139

seq1  ACTTTGAGCTGGATGGGGCTCATGACAAGGGAATTC  1179
      |||||||||||||||||||||||||| |||||||||
seq2  ACTTTGAGCTGGATGGGGCTCATGACCAGGGAATTC  1175