BAC Information

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BAC

Clone NameB6Ng01-297A08
Chromosome5 (Build37)
Map Location 13,974,143 - 13,975,321
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297A08.bB6Ng01-297A08.g
ACCGA092485GA092486
length1,1741,225
definitionB6Ng01-297A08.b B6Ng01-297A08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactagcacttgaaaggaattgtccttgaaaatctccatgaaaag
gactttccattttttaaatatacccaatttagggggaaaagtagcaagtt
gatttgaaaatgtcaatcaagaggtagatataatcatttgtactttaaat
tttataatgaaaatttaaaatggtagtatatcttatttgaaaaaattcag
taattgttgtcattagtatcctaataattttctaagaatgatttgaatgt
ctttcacaaaggcttacaattccgtaaagcaaaaaagttccactatgaac
aatgaaatgaacactaaactggagaaaatcaagcatcaactataagttga
gaaacgttttcatcagaagaaaacgatgcaggtatatgaaatttaaacag
aggatggtgtatcttattgtgacatatgttccgatgagaaaggtcaagat
atgccctcatgcaaggcaccctgctgaggggccttaggttcggacattag
tgttcctttgagggaaaacagttgttacagtgaaagtattatctggcaca
tagttaagccagtagcttaagtttcctgaaaacattaattatccagtcat
cctgtgagtcactgaagtaatgaaattcaagatgggttgatttgacattg
ttaagggtcttgaaagaatgtgaaagggcctgtgctgatttgagggatca
ggccagcatgaggtgtgtggagaatgctacaggcaaaaacggtgagtcat
ctccaggcggctgttggctgagtcactcctctggccttcacagtatcttg
tatttctccaggtggtcatagccactctgtctttcccccgcattccagat
ccaccatcttttcctgtccttccttttaaatgacctctttgggtctatat
agctcttttttcctaattcaaaacaacaacaaaaaggatgtgtgtacaaa
tgtcaaagaagttgataaacagacaaatatgggaagtatacctaaatttt
aaaagttttttacaagtttaaaggttttttaaagttcacattgtgacata
tttttgaaacagtttataaattatgaaatcataattatgttaaattatat
tagtgtggaactatactaaataaaatatattattttgtaacatggtaaat
aggaaatttatagaatattcctaa
gaattcaaaaatgctgaaattattggaggaaaagatagactatgccctac
atggtgaaggtgtaaggaaggacttttgccccaggggttaaagccaacca
ttgacaattgtgttagcatgaggttcaagagcttccggaaagcaaaggaa
agagctcacgttcagatagtgggagacagtctttgccagctacacagatt
aatatccaagttacattaaaaagaaaaaaacattcaaagatacaaataat
ccaattttgaagatgaactatggttatgatcagagagctctatggaagaa
agaaaaaggactaaaatatatctcaagaagcgtttatcatttttaacaat
tagggaaacacacatagaaacagcttcgggatttcatctttcctgaatca
gaatgcaaagataaccagagcacccaacaacaaatgctggtgaggaagtg
aaggaacactcagccactatgttgggtgtgcaaacttgtgcagtcactct
ggaaatcagtgtgcagaattctcagaaagctaaaaacaagtctccatatg
gcccagcaacatcaccccttctcacattctcaacacctagacacccacag
atgcttgctcagccatgttcactgatgctctactcacagtaggtagaaaa
ttgaaacaatctaaatttcggctgacaagttgataagataatacactgca
ttttcacagtggaactatgaagaaaatgaagtcaagaaatctatctgcag
gcaaatggatttatctaaaaggcattatattaaccttgtaacccaggcct
ataaaatgaaaagtcacagtttcttatgtgtagttctttgctacaactct
ttacatgtgagtatacagccttgagtaatggcagaagacaggaagaaggg
acatgaggagtggggaaaagcccctacagcaagagctgaatgggccctct
cacatcacttaccaccatctgaaacaaagatatttacatgacaattcata
gtcgtaacaaaaatacagtaagaaaatacagtagcagtgaaaagagtttt
tatggtgggagcttacacaacatggagggagctgtataagggtgaaagca
ttgggaaaattgagaaggcactgccctaagagagctaaacatattctagt
gggctcatgctgtacaacctccatggccacgccaatgttttgaagagaaa
agaagctctgcccacaaaaacggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13974143_13975321
seq2: B6Ng01-297A08.b_47_1220

seq1  GAATTCACTAGCACTTGAAAGGAATTGTCCTTGAAAATCTCCATGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGCACTTGAAAGGAATTGTCCTTGAAAATCTCCATGAAAAG  50

seq1  GACTTTCCATTTTTTAAATATACCCAATTTAGGGGGAAAAGTAGCAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCATTTTTTAAATATACCCAATTTAGGGGGAAAAGTAGCAAGTT  100

seq1  GATTTGAAAATGTCAATCAAGAGGTAGATATAATCATTTGTACTTTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAAAATGTCAATCAAGAGGTAGATATAATCATTTGTACTTTAAAT  150

seq1  TTTATAATGAAAATTTAAAATGGTAGTATATCTTATTTGAAAAAATTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATGAAAATTTAAAATGGTAGTATATCTTATTTGAAAAAATTCAG  200

seq1  TAATTGTTGTCATTAGTATCCTAATAATTTTCTAAGAATGATTTGAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTGTCATTAGTATCCTAATAATTTTCTAAGAATGATTTGAATGT  250

seq1  CTTTCACAAAGGCTTACAATTCCGTAAAGCAAAAAAGTTCCACTATGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAAAGGCTTACAATTCCGTAAAGCAAAAAAGTTCCACTATGAAC  300

seq1  AATGAAATGAACACTAAACTGGAGAAAATCAAGCATCAACTATAAGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGAACACTAAACTGGAGAAAATCAAGCATCAACTATAAGTTGA  350

seq1  GAAACGTTTTCATCAGAAGAAAACGATGCAGGTATATGAAATTTAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTTTTCATCAGAAGAAAACGATGCAGGTATATGAAATTTAAACAG  400

seq1  AGGATGGTGTATCTTATTGTGACATATGTTCCGATGAGAAAGGTCAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTGTATCTTATTGTGACATATGTTCCGATGAGAAAGGTCAAGAT  450

seq1  ATGCCCTCATGCAAGGCACCCTGCTGAGGGGCCTTAGGTTCGGACATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCATGCAAGGCACCCTGCTGAGGGGCCTTAGGTTCGGACATTAG  500

seq1  TGTTCCTTTGAGGGAAAACAGTTGTTACAGTGAAAGTATTATCTGGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTGAGGGAAAACAGTTGTTACAGTGAAAGTATTATCTGGCACA  550

seq1  TAGTTAAGCCAGTAGCTTAAGTTTCCTGAAAACATTAATTATCCAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGCCAGTAGCTTAAGTTTCCTGAAAACATTAATTATCCAGTCAT  600

seq1  CCTGTGAGTCACTGAAGTAATGAAATTCAAGATGGGTTGATTTGACATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGTCACTGAAGTAATGAAATTCAAGATGGGTTGATTTGACATTG  650

seq1  TTAAGGGTCTTGAAAGAATGTGAAAGGGCCTGTGCTGATTTGAGGGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTCTTGAAAGAATGTGAAAGGGCCTGTGCTGATTTGAGGGATCA  700

seq1  GGCCAGCATGAGGTGTGTGGAGAATGCTACAGGCAAAAACGGTGAGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCATGAGGTGTGTGGAGAATGCTACAGGCAAAAACGGTGAGTCAT  750

seq1  CTCCAGGCGGCTGTTGGCTGAGTCACTCCTCTGGCCTTCACAGTATCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCGGCTGTTGGCTGAGTCACTCCTCTGGCCTTCACAGTATCTTG  800

seq1  TATTTCTCCAGGTGGTCATAGCCACTCTGTCTTTCCCCCGCATTCCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCCAGGTGGTCATAGCCACTCTGTCTTTCCCCCGCATTCCAGAT  850

seq1  CCACCATCTTTTCCTGTCCTTCCTTTTAAATGACCTCTTTGGGTCTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCTTTTCCTGTCCTTCCTTTTAAATGACCTCTTTGGGTCTATAT  900

seq1  AGCTCTTTTTTCCTAATTCAAAACAACAACAAAAAGGATGTGTGTACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTTTTCCTAATTCAAAACAACAACAAAAAGGATGTGTGTACAAA  950

seq1  TGTCAAAGAAAGTTGATAAACAGACAAAATAT-GGAAGTATACCTAAAAT  999
      |||||||| |||||||||||||||| |||||| |||||||||||| ||||
seq2  TGTCAAAG-AAGTTGATAAACAGAC-AAATATGGGAAGTATACCT-AAAT  997

seq1  TTTAAAAGTTTTTTACAAGTTTAAAGTTTTTTAAAAGTTTCAACATTGTG  1049
      |||||||||||||||||||||||||| ||||| ||||||   ||||||||
seq2  TTTAAAAGTTTTTTACAAGTTTAAAGGTTTTTTAAAGTT--CACATTGTG  1045

seq1  ACAATATTTTTGAAACAGTTTAATAAATTATGAAATCAT-ATTATG-TAA  1097
      || |||||||||||||||||| ||||||||||||||||| |||||| |||
seq2  AC-ATATTTTTGAAACAGTTT-ATAAATTATGAAATCATAATTATGTTAA  1093

seq1  ATTATATTAGTGTGGAACTATAACTTAAATAAAATATATTA-TTTGTAAC  1146
      ||||||||||||||||||||||   |||||||||||||||| ||||||||
seq2  ATTATATTAGTGTGGAACTATA--CTAAATAAAATATATTATTTTGTAAC  1141

seq1  ATGGTACATA-GATATTTATAGATTATTTCCTAA  1179
      |||||| ||| || ||||||||| || |||||||
seq2  ATGGTAAATAGGAAATTTATAGAATA-TTCCTAA  1174