BAC Information

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BAC

Clone NameB6Ng01-297I01
Chromosome5 (Build37)
Map Location 58,527,372 - 58,672,109
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297I01.bB6Ng01-297I01.g
ACCGA092844GA092845
length1,179831
definitionB6Ng01-297I01.b B6Ng01-297I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,527,372 - 58,528,563)(58,671,279 - 58,672,109)
sequence
gaattcttacacacacacacacacacacacacacacacacacacatatat
atatatatatatatatatacatatgaatgactacccatgaccttgtgggt
tagaaaatgtatttttggtagaaattggctaaatagccaatggtctagta
tttaaggactcaacttaaaaaactaaacaaaatgtcaaaatgtattacat
agttttgacaacgtaaaattattttgttttgtgtctttgtttgcttgttt
tgagccagcggtttgcatacagatgtcttctattgaatttttctgtattt
tctttagtggtctcccacctttcattttctgcatttttaagactgtcttt
acacatgtttcctgtgttgtttgtttgattgtttcttcttttgtgaagca
aacctagttttttaggagccttaactaatgctagcagctaacccagcacc
cattgacttgcactgcaatctgctttattttgatggaaattcaggacagc
aacttgttgagctccaggaaggagctgagagagagattaaatttgcattt
gttcattttctcttaatttttattcccttcccaatatttgtttatacact
gtatgaagttgattaagcaagataatatgaattttataaactgcaggaaa
taaggaaaatataggaatgctaaaacattcaaagctagaaatatctgtat
ttcctttgcaaaccaactttgttgtttcctgttgtgttcatttgctaaat
ggaaatcttattcctgggttggatttcatatgcacgattcatacaggaat
aactttgtctccttcttgaatgtcccaagggaagataaacactggttaat
agttaataaacgcaaaaatttgccccacatagtttcagatgatgatgagt
gaatattatatctcacttgtgatgttcagtgctatttttccattaaagtt
ataactaaaatgattaattaagaaaaggtcataaaaagataaaggtccac
agagtaatgctagctatatatcatgaagaagtagattgggattttaaaat
taaagtgttattaatatttctaatttaaaacagtcccactaaagaacaac
tgtcttaggaaaattattaacggagagaaaaataaaatattttatttgtc
cactattagtgcattacacctctttagac

gaattcacagaataaaatctatgcttcttctgcctcctttttctgaccat
aaacctgcagtagattccttcaccatgttttaccctcatgccatttttat
gtaataataataatttcctttttctccctgtctttgtctctgtctatctc
tgtctctctctgtttctctctgcctctgtttctcttcctcactgcttaag
agttttattaataaatcaaatttgttaaacatttataagaaattggtctt
gtggggaacaatgttgtggtttctaaaaggcagaaagtataaaattgatg
accttacagaggctttgtccttttagattggtgtcaagcctccgtaaact
gaggtatggtcctgagttttgtcagaagtgtcactgaagagccattgaat
acttagagcactcagcatagacagtaaagcaattaggctgtagctcctaa
cgtggaaattcgcttctagagtatcacagaacctgtgaagttctacagat
catgatctcagccattacatctggagcaagattgtgtctgtgaagccctg
tattttaaacttaaatatattatattttgataactaatctgtaacaaatt
tttgaagagaataaatacttcttaaagaatttaccactcagtacaatagc
catcctttttttttttttcagaatatattaatgtcagatttattaggaag
ctgctcttgggcaaattcactggcctcaaggactaaggatgaaagaaagg
gtataaagaaagaagagaaggagaacaaagaaggggtgaagatgaagagc
aagtgggagagagggagagaggttgggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58527372_58528563
seq2: B6Ng01-297I01.b_45_1223

seq1  GAATTCTTACACACACACACACACACACACACACACACACACACATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACACACACACACACACACACACACACACACACACACATATAT  50

seq1  ATATATATATATATATATACATATGAATGACTACCCATGACCTTGTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATACATATGAATGACTACCCATGACCTTGTGGGT  100

seq1  TAGAAAATGTATTTTTGGTAGAAATTGGCTAAATAGCCAATGGTCTAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATGTATTTTTGGTAGAAATTGGCTAAATAGCCAATGGTCTAGTA  150

seq1  TTTAAGGACTCAACTTAAAAAACTAAACAAAATGTCAAAATGTATTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGACTCAACTTAAAAAACTAAACAAAATGTCAAAATGTATTACAT  200

seq1  AGTTTTGACAACGTAAAATTATTTTGTTTTGTGTCTTTGTTTGCTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGACAACGTAAAATTATTTTGTTTTGTGTCTTTGTTTGCTTGTTT  250

seq1  TGAGCCAGCGGTTTGCATACAGATGTCTTCTATTGAATTTTTCTGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGCGGTTTGCATACAGATGTCTTCTATTGAATTTTTCTGTATTT  300

seq1  TCTTTAGTGGTCTCCCACCTTTCATTTTCTGCATTTTTAAGACTGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTGGTCTCCCACCTTTCATTTTCTGCATTTTTAAGACTGTCTTT  350

seq1  ACACATGTTTCCTGTGTTGTTTGTTTGATTGTTTCTTCTTTTGTGAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTTTCCTGTGTTGTTTGTTTGATTGTTTCTTCTTTTGTGAAGCA  400

seq1  AACCTAGTTTTTTAGGAGCCTTAACTAATGCTAGCAGCTAACCCAGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGTTTTTTAGGAGCCTTAACTAATGCTAGCAGCTAACCCAGCACC  450

seq1  CATTGACTTGCACTGCAATCTGCTTTATTTTGATGGAAATTCAGGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTTGCACTGCAATCTGCTTTATTTTGATGGAAATTCAGGACAGC  500

seq1  AACTTGTTGAGCTCCAGGAAGGAGCTGAGAGAGAGATTAAATTTGCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTGAGCTCCAGGAAGGAGCTGAGAGAGAGATTAAATTTGCATTT  550

seq1  GTTCATTTTCTCTTAATTTTTATTCCCTTCCCAATATTTGTTTATACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTCTCTTAATTTTTATTCCCTTCCCAATATTTGTTTATACACT  600

seq1  GTATGAAGTTGATTAAGCAAGATAATATGAATTTTATAAACTGCAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGTTGATTAAGCAAGATAATATGAATTTTATAAACTGCAGGAAA  650

seq1  TAAGGAAAATATAGGAATGCTAAAACATTCAAAGCTAGAAATATCTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAATATAGGAATGCTAAAACATTCAAAGCTAGAAATATCTGTAT  700

seq1  TTCCTTTGCAAACCAACTTTGTTGTTTCCTGTTGTGTTCATTTGCTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGCAAACCAACTTTGTTGTTTCCTGTTGTGTTCATTTGCTAAAT  750

seq1  GGAAATCTTATTCCTGGGTTGGATTTCATATGCACGATTCATACAGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTTATTCCTGGGTTGGATTTCATATGCACGATTCATACAGGAAT  800

seq1  AACTTTGTCTCCTTCTTGAATGTCCCAAGGGAAGATAAACACTGGTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTCTCCTTCTTGAATGTCCCAAGGGAAGATAAACACTGGTTAAT  850

seq1  AGTTAATAAACGCAAAAATTTGCCCCACATAGTTTCAGATGATGATGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAAACGCAAAAATTTGCCCCACATAGTTTCAGATGATGATGAGT  900

seq1  GAATATTATATCTCACTTGTGATGTTCAGTGCTATTTTTCCATTAAAAGT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATATTATATCTCACTTGTGATGTTCAGTGCTATTTTTCCATT-AAAGT  949

seq1  TATAACTAAAATGATTAATTAAGAAAAGGTCATAAAAAAGATAAAGGTCC  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATAACTAAAATGATTAATTAAGAAAAGGTCAT-AAAAAGATAAAGGTCC  998

seq1  ACAGAGTAATGCTAGCTATATAATCATGAAG-AGTAGATTGGGATTTTAA  1049
      ||||||||||||||||||||| ||||||||| |||||||||||||||| |
seq2  ACAGAGTAATGCTAGCTATAT-ATCATGAAGAAGTAGATTGGGATTTT-A  1046

seq1  AAATAAAAGTGTTAATTAATATTTCTAATTTTAAAAACAGT-CCACTAAA  1098
      |||| |||||||| |||||||||||||||||  |||||||| ||||||||
seq2  AAATTAAAGTGTT-ATTAATATTTCTAATTT--AAAACAGTCCCACTAAA  1093

seq1  GAAACAACTGTCTTAGAAAATAAATTTAAAGGGAGAGAAAAATAAAATAT  1148
      | |||||||||||||| ||  || | | || |||||||||||||||||||
seq2  G-AACAACTGTCTTAGGAA--AATTATTAACGGAGAGAAAAATAAAATAT  1140

seq1  TTTATTTTGTCAATTTATTTAAAGTGCATTACAACTCTTTAGAC  1192
      |||| |||||| |  ||||   ||||||||||| ||||||||||
seq2  TTTA-TTTGTCCA-CTATT---AGTGCATTACACCTCTTTAGAC  1179


seq1: chr5_58671279_58672109
seq2: B6Ng01-297I01.g_64_894 (reverse)

seq1  TTCTCCCAACCTCTCTCCCTCTCTCCCACTTGCTCTTCATCTTCACCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAACCTCTCTCCCTCTCTCCCACTTGCTCTTCATCTTCACCCCT  50

seq1  TCTTTGTTCTCCTTCTCTTCTTTCTTTATACCCTTTCTTTCATCCTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTCTCCTTCTCTTCTTTCTTTATACCCTTTCTTTCATCCTTAGT  100

seq1  CCTTGAGGCCAGTGAATTTGCCCAAGAGCAGCTTCCTAATAAATCTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGCCAGTGAATTTGCCCAAGAGCAGCTTCCTAATAAATCTGACA  150

seq1  TTAATATATTCTGAAAAAAAAAAAAAGGATGGCTATTGTACTGAGTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATATTCTGAAAAAAAAAAAAAGGATGGCTATTGTACTGAGTGGTA  200

seq1  AATTCTTTAAGAAGTATTTATTCTCTTCAAAAATTTGTTACAGATTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTAAGAAGTATTTATTCTCTTCAAAAATTTGTTACAGATTAGTT  250

seq1  ATCAAAATATAATATATTTAAGTTTAAAATACAGGGCTTCACAGACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATATAATATATTTAAGTTTAAAATACAGGGCTTCACAGACACAA  300

seq1  TCTTGCTCCAGATGTAATGGCTGAGATCATGATCTGTAGAACTTCACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCCAGATGTAATGGCTGAGATCATGATCTGTAGAACTTCACAGG  350

seq1  TTCTGTGATACTCTAGAAGCGAATTTCCACGTTAGGAGCTACAGCCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGATACTCTAGAAGCGAATTTCCACGTTAGGAGCTACAGCCTAAT  400

seq1  TGCTTTACTGTCTATGCTGAGTGCTCTAAGTATTCAATGGCTCTTCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTACTGTCTATGCTGAGTGCTCTAAGTATTCAATGGCTCTTCAGTG  450

seq1  ACACTTCTGACAAAACTCAGGACCATACCTCAGTTTACGGAGGCTTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTGACAAAACTCAGGACCATACCTCAGTTTACGGAGGCTTGACA  500

seq1  CCAATCTAAAAGGACAAAGCCTCTGTAAGGTCATCAATTTTATACTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTAAAAGGACAAAGCCTCTGTAAGGTCATCAATTTTATACTTTCT  550

seq1  GCCTTTTAGAAACCACAACATTGTTCCCCACAAGACCAATTTCTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAGAAACCACAACATTGTTCCCCACAAGACCAATTTCTTATAAA  600

seq1  TGTTTAACAAATTTGATTTATTAATAAAACTCTTAAGCAGTGAGGAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAACAAATTTGATTTATTAATAAAACTCTTAAGCAGTGAGGAAGAG  650

seq1  AAACAGAGGCAGAGAGAAACAGAGAGAGACAGAGATAGACAGAGACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGGCAGAGAGAAACAGAGAGAGACAGAGATAGACAGAGACAAAG  700

seq1  ACAGGGAGAAAAAGGAAATTATTATTATTACATAAAAATGGCATGAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGAAAAAGGAAATTATTATTATTACATAAAAATGGCATGAGGGT  750

seq1  AAAACATGGTGAAGGAATCTACTGCAGGTTTATGGTCAGAAAAAGGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGGTGAAGGAATCTACTGCAGGTTTATGGTCAGAAAAAGGAGGC  800

seq1  AGAAGAAGCATAGATTTTATTCTGTGAATTC  831
      |||||||||||||||||||||||||||||||
seq2  AGAAGAAGCATAGATTTTATTCTGTGAATTC  831


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