BAC Information

Click to search

BAC

Clone NameB6Ng01-297I18
Chromosome5 (Build37)
Map Location 84,495,303 - 84,631,601
singlet/doubletdoublet
Overlap geneEpha5, LOC100039489
Upstream geneSrd5a2l2, LOC100039608, LOC231368
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297I18.bB6Ng01-297I18.g
ACCGA092878GA092879
length505865
definitionB6Ng01-297I18.b B6Ng01-297I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,495,303 - 84,495,997)(84,630,748 - 84,631,601)
sequence
aatatttatctatagtagtttttatttaataggattcgataaattgtatc
ttaaacgtgcaaacggaaatgggcacaattggttccactgagattgtacc
aaataacaatgcatcagaggcaggatctaacatattctcagacttcaaga
atataagttgcaccattagatataaaataaaattcctgccaggaaaactt
tatttaaactattacctgggtattcactgttaaaatctgacattttgtca
ttggggaatctttgctctcctctcctttcctttcctttcctttcctttcc
tttcctttcctttcctttcctttcctttcctttcctttcctttcctttcc
tttcttttttcctttcttctttcttttcctttccttttctttcttcttct
ctttccttccctctcctttcctttcctttcctttctttttctgtccgttc
ctctctccttcttttgtttgttctctttttttcttttttatttaattttt
ttttt

gaattcatttggcatatgaatgaaccttgtatatgtacttacacacataa
aagatacaacatttaaagtgatattttacattttgttatgattcatctct
ggggaaggaaagaaaatataagaatagaagaaagaaaggttcagaaataa
accacagaaactgatgctgagaagagacaaggtgatcaagatgtgcctct
ggcagaatttccctttggtgaacctttagaggttggcattgtcttcttca
gccattctgccaaatcactgctagaatttacttagattacctccattttt
aaggtcagtttgcatacaatttttcattccgattcaaccttccctttaac
acatttctctgtgctcactgctttcctcttggcagtctctactggccagt
aaccccaaataaaaaaaatcctttgtcaatggttttgaaacttattttaa
atttaaaattagaagcaagactttccttccttccttccttccttccttcc
atacatacttccttccttccttccttctttcctttcttcctttcttcctt
tcttccctttcctcctctctttctttcacttgaaaatagattattctttc
atacaactcttcctgaccacagttttccctccctcaactacttgcttccc
ttggataccctcccccttccattcccctttgaaaaagtagcagacctcca
agagacaacaaaatacaacaacaccaaccaaaagataagttcaggcactg
cattgatcccttcaaatcaatgctggaccaggcactcttttcaagctgac
ttaattaaaggcatacaagtaaaggatatgtgtttaagtagggcatgttt
taaaaatagggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84495303_84495997
seq2: B6Ng01-297I18.b_49_559

seq1  GAATTCAATATTTATCTATAGTAGTTTTTATTTAATAGGATTCGATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTTATCTATAGTAGTTTTTATTTAATAGGATTCGATAAAT  50

seq1  TGTATCTTAAACGTGCAAACGGAAATGGGCACAATTGGTTCCACTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTAAACGTGCAAACGGAAATGGGCACAATTGGTTCCACTGAGAT  100

seq1  TGTACCAAATAACAATGCATCAGAGGCAGGATCTAACATATTCTCAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAAATAACAATGCATCAGAGGCAGGATCTAACATATTCTCAGACT  150

seq1  TCAAGAATATAAGTTGCACCATTAGATATAAAATAAAATTCCTGCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATATAAGTTGCACCATTAGATATAAAATAAAATTCCTGCCAGGA  200

seq1  AAACTTTATTTAAACTATTACCTGGGTATTCACTGTTAAAATCTGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATTTAAACTATTACCTGGGTATTCACTGTTAAAATCTGACATT  250

seq1  TTGTCATTGGGGAATCTTTGCTCTCCTCTCCTTTCCTTTCCTTTCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTGGGGAATCTTTGCTCTCCTCTCCTTTCCTTTCCTTTCCTTTC  300

seq1  CTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTC  350

seq1  CTTTCCTTTTTCCTTTCCTTTCCTTTCCTTTCCTTTTTCCTTTCCTTTCC  400
      |||||||||        ||||  ||||||||| | |||| ||||||||||
seq2  CTTTCCTTT--------CTTT--TTTCCTTTCTTCTTTCTTTTCCTTTCC  390

seq1  TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTTTCCTTT  450
      ||| |||||   | |||  |||||||| ||| ||||||||  ||||||||
seq2  TTTTCTTTC---TTCTTCTCTTTCCTTCCCTCTCCTTTCC--TTTCCTTT  435

seq1  CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT  500
      |||||| ||| || ||| |||||   || |||||  ||||  |||  | |
seq2  CCTTTCTTTTTCTGTCCGTTCCT---CTCTCCTT--CTTTTGTTTGTTCT  480

seq1  CCTTTCCTTTCCTTTCT-TTTCCTTTTTCCTTTCCTTTTTCCTTTCCTTT  549
      | |||  |||| ||| | |||  |||||  |||                 
seq2  CTTTT--TTTCTTTTTTATTTAATTTTTTTTTT-----------------  511

seq1  CCTCTTTCTTTCTGTCTTTCTTTCTGTCTTTCTTTCTTTCTGTCTTTCTT  599
                                                        
seq2  --------------------------------------------------  511

seq1  TCTTTCTTTCTTTCTTTCTTTCTCACTCTTTTTCTGTTTGTCTTTTACTT  649
                                                        
seq2  --------------------------------------------------  511

seq1  TTTCTTTTGTTTGTTTTTCTTCTTTCTTTTTAATTTAAATTTTTTT  695
                                                    
seq2  ----------------------------------------------  511


seq1: chr5_84630748_84631601
seq2: B6Ng01-297I18.g_71_935 (reverse)

seq1  CCAACCTTATTTT--AAACATGCCCTAC-TAAACACATAT-CTTTACTTG  46
      |||||| ||||||  ||||||||||||| ||||||||||| |||||||||
seq2  CCAACCCTATTTTTAAAACATGCCCTACTTAAACACATATCCTTTACTTG  50

seq1  TATGCCTTT-ATTAAGTCAGCTTG-AAAGAGTTGCCTGGTCCAGCATTGA  94
      ||||||||| |||||||||||||| |||||| ||||||||||||||||||
seq2  TATGCCTTTAATTAAGTCAGCTTGAAAAGAG-TGCCTGGTCCAGCATTGA  99

seq1  TTTG-AGGGCTC-ATGCAGTGCCTGAACTTATCTTTT-GTTGTTGTTGTT  141
      |||| |||| || |||||||||||||||||||||||| |||| |||||||
seq2  TTTGAAGGGATCAATGCAGTGCCTGAACTTATCTTTTGGTTGGTGTTGTT  149

seq1  GTATTTTGTTGTCTCTTGGAGGTCTGCTAC-TTTTCAAA-GGGAATGGAA  189
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  GTATTTTGTTGTCTCTTGGAGGTCTGCTACTTTTTCAAAGGGGAATGGAA  199

seq1  -GGGGAGGGTATCCAAGGGAAGCAAGTAGTGGAGGGAGGGAAAACTGTGG  238
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGGGAGGGTATCCAAGGGAAGCAAGTAGTTGAGGGAGGGAAAACTGTGG  249

seq1  TCAGGAAGAGTTGTATGAAAGAATAATCTATTTTCAAGTGAAAGAAAGAG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGAGTTGTATGAAAGAATAATCTATTTTCAAGTGAAAGAAAGAG  299

seq1  AGGAGGAAAGGGAAGAAAGGAAGAAAGGAAGAAAGGAAAGAAGGAAGGAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAAGGGAAGAAAGGAAGAAAGGAAGAAAGGAAAGAAGGAAGGAA  349

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGTCTT  388
      ||||||||| | | | ||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGTATGTATGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGTCTT  399

seq1  GCTTCTAATTTTAAATTTAAAATAAGTTTCAAAACCATTGACAAAGGATT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAATTTTAAATTTAAAATAAGTTTCAAAACCATTGACAAAGGATT  449

seq1  TTTTTTATTTGGGGTTACTGGCCAGTAGAGACTGCCAAGAGGAAAGCAGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTGGGGTTACTGGCCAGTAGAGACTGCCAAGAGGAAAGCAGT  499

seq1  GAGCACAGAGAAATGTGTTAAAGGGAAGGTTGAATCGGAATGAAAAATTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGAGAAATGTGTTAAAGGGAAGGTTGAATCGGAATGAAAAATTG  549

seq1  TATGCAAACTGACCTTAAAAATGGAGGTAATCTAAGTAAATTCTAGCAGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAACTGACCTTAAAAATGGAGGTAATCTAAGTAAATTCTAGCAGT  599

seq1  GATTTGGCAGAATGGCTGAAGAAGACAATGCCAACCTCTAAAGGTTCACC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGCAGAATGGCTGAAGAAGACAATGCCAACCTCTAAAGGTTCACC  649

seq1  AAAGGGAAATTCTGCCAGAGGCACATCTTGATCACCTTGTCTCTTCTCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAATTCTGCCAGAGGCACATCTTGATCACCTTGTCTCTTCTCAG  699

seq1  CATCAGTTTCTGTGGTTTATTTCTGAACCTTTCTTTCTTCTATTCTTATA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTTCTGTGGTTTATTTCTGAACCTTTCTTTCTTCTATTCTTATA  749

seq1  TTTTCTTTCCTTCCCCAGAGATGAATCATAACAAAATGTAAAATATCACT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCCTTCCCCAGAGATGAATCATAACAAAATGTAAAATATCACT  799

seq1  TTAAATGTTGTATCTTTTATGTGTGTAAGTACATATACAAGGTTCATTCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTGTATCTTTTATGTGTGTAAGTACATATACAAGGTTCATTCA  849

seq1  TATGCCAAATGAATTC  854
      ||||||||||||||||
seq2  TATGCCAAATGAATTC  865


| Home | SequenceCutter | Blast | Download |