BAC Information

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BAC

Clone NameB6Ng01-297O06
Chromosome5 (Build37)
Map Location 138,416,437 - 138,586,789
singlet/doubletdoublet
Overlap geneAzgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113
Upstream geneFis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1
Downstream geneCops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297O06.bB6Ng01-297O06.g
ACCGA093140GA093141
length1,0581,118
definitionB6Ng01-297O06.b B6Ng01-297O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,416,437 - 138,417,492)(138,585,653 - 138,586,789)
sequence
ctccagcctaaccacagagtgggtgggtatgtgggcacagaaagatgcgt
aaaagcacaaattgtcatctggggagtcaattccatcagttaagtgcttg
ctgtgtacataaaattggacttttttttaaaaaaaatgttaaaaataaaa
acatttttttaaaaagccaagcaagacagcacatatctgtaatcccagag
ctggggaagcagagacagaaagttatttggcttgctagccaaccagtcaa
gacaaacctgtgaacctcaagttcaatgagagatcctgtctcaatataaa
gtgggaagccattgaggcagacacaagacatcaacctctgggcctcccac
atacaggtacacatacatgcacaacaaggggtgggggttggacagagaca
gagacagagacacagaacctgctgtccccagcagctgacagggtaaccca
gacaccctcctgaaataaatagccacacagatgaactagtgcaaacaata
aaggaacaatggttgcaacagccataaaagtcaatagaaaaaaaaaaaag
gttttgtggcacttgtggtatccactggtgagaaagaaacacttttcttc
agtccagccccggattccagaagaaatcctgacttctgtataaagaaagc
taaggcaaatagcatcagagtctgttttattggtaatagggcatgaacac
atgaaaagaaaatttctcaaaggaaatagaatttgtcgtgatttcttatt
tacacagcctttagttctcccttttctctacccctgaagtagttgttagg
gcttgggggatatggattcgtagataaggtgctcactgcacaattgcaag
gtcctgagttcagatccccagaatccacagaaagccagatgcagtagtga
gtcctcacctcgctagttcccctttctttgccccaccttgagtggtcttc
cccttggataagaggaggattctcctttcctgtagttatgtctgtgtaca
tgtggtgtggtgtacatgtgctcaacatactcatgtcagaagaacacctt
tggtggaa
gaattcctctgttggaagactgaataggaaaatacaagagtttcaccaag
ttagagttgaggaaaagctcacccatattggagaaagaaataagaagtac
agtgagtttggaaacagcttcactgtgaattccaaacttatttcacatca
aagacttcagatgggagacaaaccccataagtgtgatgaatgtagcaaga
gttttaatcgtacttcagaccttattcaacatcagagaatccacactgga
gaaaaaccctatgaatgtagtgaatgtggaaaggccttcagtcagagcgc
acatcttattcagcaccagagaatccacactggagaaaaaccttatgagt
gtaaggattgtgggaagaccttcagttgtagctctgctctcattctgcat
cagagaatccacactggggagaagccttatgaatgtaacgagtgtgggaa
aacctttagctggagctccactctcactcaccaccagagaatccacacag
gggagaagccctatgcttgcaatgagtgtgggaaggccttcagcaggagc
tccacccttattcatcatcagagaatccacactggagagaagccctatga
atgtaatgagtgtgggaaagccttcagccagagctcacacctctatcagc
accagagaatccacactggagagaagccctatgaatgtatggaatgtgga
gggaagtttacctacagttccggccttattcaacatcagcgaatccacac
aggggagaatccctatgaatgtagcgagtgtgggaaagccttcaggtaca
gctcagcacttgttcgccatcagaggattcacactggagagaagcctttg
actgtaatgggtgtaaagcaaaaactctctcagagcctctgctgagaagc
cacatcagagactccacatgagagagagccataactatttttcttcatgt
cctgcgtccacagagctcttgcttacctgtttaatagaccagtttagggt
ctgtcccaccttcacaattcactaaagtggctgactgggaaagcatctgc
cacaggatcgcaggttcccaggacgaagtcttaaattgtgaatcagtagt
taataggcactgaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138416437_138417492
seq2: B6Ng01-297O06.b_59_1116

seq1  CTCCAGCCTAACCACAGAGTGGGTGGGTATGTGGGCACAGAAAGATGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCTAACCACAGAGTGGGTGGGTATGTGGGCACAGAAAGATGCGT  50

seq1  AAAAGCACAAATTGTCATCTGGGGAGTCAATTCCATCAGTTAAGTGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACAAATTGTCATCTGGGGAGTCAATTCCATCAGTTAAGTGCTTG  100

seq1  CTGTGTACATAAAATTGGACTTTTTTTTAAAAAAAATGTTAAAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACATAAAATTGGACTTTTTTTTAAAAAAAATGTTAAAAATAAAA  150

seq1  ACATTTTTTTAAAAAGCCAAGCAAGACAGCACATATCTGTAATCCCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTTTAAAAAGCCAAGCAAGACAGCACATATCTGTAATCCCAGAG  200

seq1  CTGGGGAAGCAGAGACAGAAAGTTATTTGGCTTGCTAGCCAACCAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGCAGAGACAGAAAGTTATTTGGCTTGCTAGCCAACCAGTCAA  250

seq1  GACAAACCTGTGAACCTCAAGTTCAATGAGAGATCCTGTCTCAATATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACCTGTGAACCTCAAGTTCAATGAGAGATCCTGTCTCAATATAAA  300

seq1  GTGGGAAGCCATTGAGGCAGACACAAGACATCAACCTCTGGGCCTCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGCCATTGAGGCAGACACAAGACATCAACCTCTGGGCCTCCCAC  350

seq1  ATACAGGTACACATACATGCACAACAAGGGGTGGGGGTTGGACAGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGTACACATACATGCACAACAAGGGGTGGGGGTTGGACAGAGACA  400

seq1  GAGACAGAGACACAGAACCTGCTGTCCCCAGCAGCTGACAGGGTAACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACACAGAACCTGCTGTCCCCAGCAGCTGACAGGGTAACCCA  450

seq1  GACACCCTCCTGAAATAAATAGCCACACAGATGAACTAGTGCAAACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTCCTGAAATAAATAGCCACACAGATGAACTAGTGCAAACAATA  500

seq1  AAGGAACAATGGTTGCAACAGCCATAAAAGTCAATAGAAAAAAAAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAATGGTTGCAACAGCCATAAAAGTCAATAGAAAAAAAAAAAAG  550

seq1  GTTTTGTGGCACTTGTGGTATCCACTGGTGAGAAAGAAACACTTTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGGCACTTGTGGTATCCACTGGTGAGAAAGAAACACTTTTCTTC  600

seq1  AGTCCAGCCCCGGATTCCAGAAGAAATCCTGACTTCTGTATAAAGAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCCCCGGATTCCAGAAGAAATCCTGACTTCTGTATAAAGAAAGC  650

seq1  TAAGGCAAATAGCATCAGAGTCTGTTTTATTGGTAATAGGGCATGAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAAATAGCATCAGAGTCTGTTTTATTGGTAATAGGGCATGAACAC  700

seq1  ATGAAAAGAAAATTTCTCAAAGGAAATAGAATTTGTCGTGATTTCTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGAAAATTTCTCAAAGGAAATAGAATTTGTCGTGATTTCTTATT  750

seq1  TACACAGCCTTTAGTTCTCCCTTTTCTCTACCCCTGAAGTAGTTGTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCCTTTAGTTCTCCCTTTTCTCTACCCCTGAAGTAGTTGTTAGG  800

seq1  GCTTGGGGGATATGGATTCGTAGATAAGGTGCTCACTGCACAATTGCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGGATATGGATTCGTAGATAAGGTGCTCACTGCACAATTGCAAG  850

seq1  GTCCTGAGTTCAGATCCCCAGAATCCACAGAAAGCCAGATGCAGTAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGTTCAGATCCCCAGAATCCACAGAAAGCCAGATGCAGTAGTGA  900

seq1  AGTCTCACCTCGCTAGTTCCCCTTTCTTTGCCCCACCTTGAGGTGGTCTT  950
         |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTCCTCACCTCGCTAGTTCCCCTTTCTTTGCCCCACCTTGA-GTGGTCTT  949

seq1  CCCTTGGAATAAGAGGAGGATTCTTCTTTTCTGTAGTTATGTCTGTGTAC  1000
      ||| | | |||||||||||||||| |||| ||||||||||||||||||||
seq2  CCCCTTGGATAAGAGGAGGATTCTCCTTTCCTGTAGTTATGTCTGTGTAC  999

seq1  ATGT-GTGTGGTGTACATGTGCCTCAACATACTCATGTCAGAAG-ACACC  1048
      |||| |||||||||||||||| |||||||||||||||||||||| |||||
seq2  ATGTGGTGTGGTGTACATGTG-CTCAACATACTCATGTCAGAAGAACACC  1048

seq1  TT--GTGGAA  1056
      ||  ||||||
seq2  TTTGGTGGAA  1058

seq1: chr5_138585653_138586789
seq2: B6Ng01-297O06.g_70_1187 (reverse)

seq1  TCTTCTCAGTGCCTAATTTACTACTGGCCTCACAATGTTTTTAAGACTCT  50
      |||| ||||||||| ||| |||||| |  ||||||    ||||||||| |
seq2  TCTTTTCAGTGCCT-ATTAACTACT-GATTCACAA----TTTAAGACT-T  43

seq1  GTTCCTGGGAAACCCTGCCGATCCCTGTGCCAGGATGCTTTCCCAGTCAG  100
        |||||||||  |||| |||| |||||| || |||||||||||||||||
seq2  CGTCCTGGGAA--CCTG-CGAT-CCTGTGGCA-GATGCTTTCCCAGTCAG  88

seq1  CCCCACTTTAAGTGAATTGTTGGAGGTGGGACAGACCCTAAACTGGTCCT  150
        ||||||| ||||||||| || |||||||||||||||||||||||| ||
seq2  --CCACTTT-AGTGAATTG-TGAAGGTGGGACAGACCCTAAACTGGT-CT  133

seq1  ATTAAAACAGGTAAGGCAAGAGCTCTGTGGACGCAGGACATGAAG-AAAA  199
      ||| |||||||||| |||||||||||||||||||||||||||||| ||||
seq2  ATT-AAACAGGTAA-GCAAGAGCTCTGTGGACGCAGGACATGAAGAAAAA  181

seq1  TAGTTTATGGCTCTCTCTCATGTGGAGTCTCTGATGTGGCTTCTCAGCAG  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAG-TTATGGCTCTCTCTCATGTGGAGTCTCTGATGTGGCTTCTCAGCAG  230

seq1  AGGCTCTGAGAGAGTTTTTGCTTTACACCCATTACAGTCAAAGGCTTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGAGAGAGTTTTTGCTTTACACCCATTACAGTCAAAGGCTTCTC  280

seq1  TCCAGTGTGAATCCTCTGATGGCGAACAAGTGCTGAGCTGTACCTGAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTGAATCCTCTGATGGCGAACAAGTGCTGAGCTGTACCTGAAGG  330

seq1  CTTTCCCACACTCGCTACATTCATAGGGATTCTCCCCTGTGTGGATTCGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCACACTCGCTACATTCATAGGGATTCTCCCCTGTGTGGATTCGC  380

seq1  TGATGTTGAATAAGGCCGGAACTGTAGGTAAACTTCCCTCCACATTCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGAATAAGGCCGGAACTGTAGGTAAACTTCCCTCCACATTCCAT  430

seq1  ACATTCATAGGGCTTCTCTCCAGTGTGGATTCTCTGGTGCTGATAGAGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATAGGGCTTCTCTCCAGTGTGGATTCTCTGGTGCTGATAGAGGT  480

seq1  GTGAGCTCTGGCTGAAGGCTTTCCCACACTCATTACATTCATAGGGCTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCTGGCTGAAGGCTTTCCCACACTCATTACATTCATAGGGCTTC  530

seq1  TCTCCAGTGTGGATTCTCTGATGATGAATAAGGGTGGAGCTCCTGCTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTGTGGATTCTCTGATGATGAATAAGGGTGGAGCTCCTGCTGAA  580

seq1  GGCCTTCCCACACTCATTGCAAGCATAGGGCTTCTCCCCTGTGTGGATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCCACACTCATTGCAAGCATAGGGCTTCTCCCCTGTGTGGATTC  630

seq1  TCTGGTGGTGAGTGAGAGTGGAGCTCCAGCTAAAGGTTTTCCCACACTCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGTGAGTGAGAGTGGAGCTCCAGCTAAAGGTTTTCCCACACTCG  680

seq1  TTACATTCATAAGGCTTCTCCCCAGTGTGGATTCTCTGATGCAGAATGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCATAAGGCTTCTCCCCAGTGTGGATTCTCTGATGCAGAATGAG  730

seq1  AGCAGAGCTACAACTGAAGGTCTTCCCACAATCCTTACACTCATAAGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCTACAACTGAAGGTCTTCCCACAATCCTTACACTCATAAGGTT  780

seq1  TTTCTCCAGTGTGGATTCTCTGGTGCTGAATAAGATGTGCGCTCTGACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAGTGTGGATTCTCTGGTGCTGAATAAGATGTGCGCTCTGACTG  830

seq1  AAGGCCTTTCCACATTCACTACATTCATAGGGTTTTTCTCCAGTGTGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTTCCACATTCACTACATTCATAGGGTTTTTCTCCAGTGTGGAT  880

seq1  TCTCTGATGTTGAATAAGGTCTGAAGTACGATTAAAACTCTTGCTACATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATGTTGAATAAGGTCTGAAGTACGATTAAAACTCTTGCTACATT  930

seq1  CATCACACTTATGGGGTTTGTCTCCCATCTGAAGTCTTTGATGTGAAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACTTATGGGGTTTGTCTCCCATCTGAAGTCTTTGATGTGAAATA  980

seq1  AGTTTGGAATTCACAGTGAAGCTGTTTCCAAACTCACTGTACTTCTTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAATTCACAGTGAAGCTGTTTCCAAACTCACTGTACTTCTTATT  1030

seq1  TCTTTCTCCAATATGGGTGAGCTTTTCCTCAACTCTAACTTGGTGAAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCAATATGGGTGAGCTTTTCCTCAACTCTAACTTGGTGAAACT  1080

seq1  CTTGTATTTTCCTATTCAGTCTTCCAACAGAGGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTTCCTATTCAGTCTTCCAACAGAGGAATTC  1118