BAC Information

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BAC

Clone NameB6Ng01-297P23
Chromosome5 (Build37)
Map Location 125,764,712 - 125,765,803
singlet/doubletsinglet
Overlap geneScarb1
Upstream geneMphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
Downstream geneUbc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297P23.bB6Ng01-297P23.g
ACCGA093219GA093220
length1,102817
definitionB6Ng01-297P23.b B6Ng01-297P23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatctccactcccccctctcaggggccattaacaaaacctggaa
atggctctgtggttaagagcgctggctgctcttcaagagagcccacgttt
cagacttgacggctcacaaccatctgtaattccagttctaggagacctga
tgctctctgggcttctgcgggtaccgggcactcacatgataaccatacat
acatacatatgggcaggctaaacatacaaatagctaaatttaggtaccgg
aagttaacataacattagcatcaaagcgaactaaaagcctcagctaacat
acagagaccccagactcccttctaccttcatagactcacctgttcgaacc
acagcaacggcagaactactggctcgatcttccctgtttgcctggaaaca
tgggacacaaagtgagtgaccaggggtgatgtgaccctcgcaatggagct
atgtttggggcttggggtgtcagtgggagagctactggttaccatgtgaa
aggccttcgctcagtcgaaaccacttcacaagaaaatgagacagaaagat
aaaggggagcctgtaacgctacgtacagttgactatccttagccaagttt
gaggctagcctgggctacaggaaaccctgatgcaaaaaattaattaaggg
gcgtggcaaggctcagctgagtgggtgacagtgcttgctgctaagcctga
agacctgagttccatccccgggacccagaaggtggaacaggctccctaaa
gttgtcccaaccttcacatgttcattgtggcatgcacctatacacacaca
cacacacacacacacacacacacacacacacacacactaaacacaactaa
aaaatgggggctagagagataactcaacggttaaaaggtcctgagttcaa
ttcctagcccaccacatgggtggctcccaaccatctatcatggccatctg
atgccctcctctggctcaacaggtgtacatttcagacagaaccactcatt
ccataaaatacataaatacacttttgaatgatatattatctgtgttatgt
ggtggcacaatgccctttaatcccagcctcttgggaaggccagagaatag
gt
gaattctttaagtggggtttgatgggccatcctagtaggaatatggaact
ctttgttgctgtgagtgtcttcaactgtgcatacatggcccaataggttt
cagaggagaatttcagaatagagactgatttggggtatttctgtaaagaa
tgttgtggattgctgtctatatgtaggtgagggcaggtacaagataaggt
gagagcctgtgattgggcagtagaaaaggaaggtgggctgagtttttttt
gttttgttttgttttgttttgtttttgttttttgtttttttcgagatagg
gtttctctgtgtagctctggctgtactggaactcactttgtagaccaggc
tggcctcaaactcataattctgtctgcctcctcctcctcctttgagatta
aaggcgtgtgccaccactgcccggcgatgctggtatcttcttaacataat
cactgctaatttcttagctccagctcaccaatatcaattgtcccagtagt
cttgttctcctcttgactatcaagccagagccaaatgaccaaagctacta
agttctgctggttgttttattacattatcaccagctttctgttttccaac
tccttcaatacctaaccttggctgtcctggatctttgctctgtagattga
ccttgaactcaaagagatctgcatgcctgtcttctggggctaaaggtgtg
taccaccattcaaggacttaaatattccttcacctagaacttgctctgcc
ccaggctggccttgaactcagagatctacttggctttatctcctgggaat
aaaagatgtgtaccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125764712_125765803
seq2: B6Ng01-297P23.b_48_1149

seq1  GAATTCCATCTCCACTCCCCCCTCTCAGGGGCCATTAACAAAACCTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCCACTCCCCCCTCTCAGGGGCCATTAACAAAACCTGGAA  50

seq1  ATGGCTCTGTGGTTAAGAGCGCTGGCTGCTCTTCAAGAGAGCCCACGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTGTGGTTAAGAGCGCTGGCTGCTCTTCAAGAGAGCCCACGTTT  100

seq1  CAGACTTGACGGCTCACAACCATCTGTAATTCCAGTTCTAGGAGACCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGACGGCTCACAACCATCTGTAATTCCAGTTCTAGGAGACCTGA  150

seq1  TGCTCTCTGGGCTTCTGCGGGTACCGGGCACTCACATGATAACCATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGGGCTTCTGCGGGTACCGGGCACTCACATGATAACCATACAT  200

seq1  ACATACATATGGGCAGGCTAAACATACAAATAGCTAAATTTAGGTACCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATGGGCAGGCTAAACATACAAATAGCTAAATTTAGGTACCGG  250

seq1  AAGTTAACATAACATTAGCATCAAAGCGAACTAAAAGCCTCAGCTAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACATAACATTAGCATCAAAGCGAACTAAAAGCCTCAGCTAACAT  300

seq1  ACAGAGACCCCAGACTCCCTTCTACCTTCATAGACTCACCTGTTCGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACCCCAGACTCCCTTCTACCTTCATAGACTCACCTGTTCGAACC  350

seq1  ACAGCAACGGCAGAACTACTGGCTCGATCTTCCCTGTTTGCCTGGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACGGCAGAACTACTGGCTCGATCTTCCCTGTTTGCCTGGAAACA  400

seq1  TGGGACACAAAGTGAGTGACCAGGGGTGATGTGACCCTCGCAATGGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACACAAAGTGAGTGACCAGGGGTGATGTGACCCTCGCAATGGAGCT  450

seq1  ATGTTTGGGGCTTGGGGTGTCAGTGGGAGAGCTACTGGTTACCATGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGGGGCTTGGGGTGTCAGTGGGAGAGCTACTGGTTACCATGTGAA  500

seq1  AGGCCTTCGCTCAGTCGAAACCACTTCACAAGAAAATGAGACAGAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTCGCTCAGTCGAAACCACTTCACAAGAAAATGAGACAGAAAGAT  550

seq1  AAAGGGGAGCCTGTAACGCTACGTACAGTTGACTATCCTTAGCCAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAGCCTGTAACGCTACGTACAGTTGACTATCCTTAGCCAAGTTT  600

seq1  GAGGCTAGCCTGGGCTACAGGAAACCCTGATGCAAAAAATTAATTAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGCCTGGGCTACAGGAAACCCTGATGCAAAAAATTAATTAAGGG  650

seq1  GCGTGGCAAGGCTCAGCTGAGTGGGTGACAGTGCTTGCTGCTAAGCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCAAGGCTCAGCTGAGTGGGTGACAGTGCTTGCTGCTAAGCCTGA  700

seq1  AGACCTGAGTTCCATCCCCGGGACCCAGAAGGTGGAACAGGCTCCCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGAGTTCCATCCCCGGGACCCAGAAGGTGGAACAGGCTCCCTAAA  750

seq1  GTTGTCCCAACCTTCACATGTTCATTGTGGCATGCACCTATACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCCAACCTTCACATGTTCATTGTGGCATGCACCTATACACACACA  800

seq1  CACACACACACACACACACACACACACACACACACACTAAACACAACTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACTAAACACAACTAA  850

seq1  AAA--TGGGGCTAGAGAGATAACTCAACGGTTAAAAGGTCCTGAGTTCAA  898
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGGGCTAGAGAGATAACTCAACGGTTAAAAGGTCCTGAGTTCAA  900

seq1  TTCCTAG-CCACCACAT-GGTGGCTCACAACCATCTATCATGG-CATCTG  945
      ||||||| ||||||||| |||||||| |||||||||||||||| ||||||
seq2  TTCCTAGCCCACCACATGGGTGGCTCCCAACCATCTATCATGGCCATCTG  950

seq1  ATGCCCTCCTCTGGCTC-ACAGGTGTACA-TTCAGACAG-ACCACTCATT  992
      ||||||||||||||||| ||||||||||| ||||||||| ||||||||||
seq2  ATGCCCTCCTCTGGCTCAACAGGTGTACATTTCAGACAGAACCACTCATT  1000

seq1  -CATAAAATACATAAATACAACTTTAAAAATAAATAATAATATCTGTG-T  1040
       |||||||||||||||||||  |||   ||| |   ||| |||||||| |
seq2  CCATAAAATACATAAATACACTTTT--GAATGA--TATATTATCTGTGTT  1046

seq1  ATGTGGTGGCACAATG-CCTTTAATCCCAG-CTCTTGGGAAGG-CAGAG-  1086
      |||||||||||||||| ||||||||||||| |||||||||||| ||||| 
seq2  ATGTGGTGGCACAATGCCCTTTAATCCCAGCCTCTTGGGAAGGCCAGAGA  1096

seq1  ATAGGT  1092
      ||||||
seq2  ATAGGT  1102