BAC Information

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BAC

Clone NameB6Ng01-298O22
Chromosome5 (Build37)
Map Location 83,904,886 - 84,014,804
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298O22.bB6Ng01-298O22.g
ACCGA093912GA093913
length1,1561,036
definitionB6Ng01-298O22.b B6Ng01-298O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,013,656 - 84,014,804)(83,904,886 - 83,905,918)
sequence
gaattcatttgtctccctgcccctaattatccactatttaacaagacaaa
tagagtttactgcaaagtacagtgacacaaaagaataatcacatcaaaga
ttatgtcattgtgcaaaccttcactttttgcaaaacatataattgctgga
ttctctagaacagttttcacttggggttatttccctctccaggtgaatag
ggggaaagttcagacggaaggaactgaagggatttgcagaaccataagaa
caacaatatcaaccaagccagaccccaaatcccagaaaactgggtggaaa
tggatatattgctgagaagagctgttgtgtgtgttttaaacaattcacac
aattttataaagaactttcaaataaaatattatgtagcaaaattagtcag
ctagtatttataaaaaaaaatctaactcctgattctatgaaattctgtac
atgttaagtttaagttttgaggaaaaattgttaaaagaattggaaaagga
tacagtttccaaaatagcatcaaaaaggaaaataaaatattattgttgaa
aatcaagtaaaatagaaagtaaataagtttaaacaataattctgtctaat
aatacaagtttctatatggaattctcatataatgaacagaatgtgagatt
ggattagaataggatacggttaatcagactccaggagactaccaatgtgt
taaactaaaagtctgagagaaaatagatagacattaatatcaaacaaata
tgtaggactaagttataggttttctcaaaggattctactaagttcttttt
taaaaaatattttttattacatattttcctcaatttcatttccaatgcta
tccccaaagtcccccatactctctccacccccactcccctacccacccac
tcccacttcttggccctggcattccctctgtactgaggcatataagttgc
acgaccaatgaggcctctctttccactgatggctgactaggctatcttct
gctacatatgcagctagagaccacgagctctgttgggggtacttaggtag
ttcaatatgttgttgccacctatagagttgcaggatcccattagctccat
tgggtactttcctctagctccctttatgggggccgtgtgaatcaatccaa
tgctga
gaattcaatagatatttataaaggttttcagaaaagaaaggaaaggagca
accaataattcacccagaagattgtggatgaaatttgagagagtataaac
ggggagttaaatgaaataagcaaatcaatgcaaggaatgaatgaggaatt
cagtacagacaaatattgccaaaataaaattgaatgtttggaaataagca
gcttagtaaggaaaaaatatccgttagaagcatcagcagcagaattgatc
aacagagaaacaagaagagggctaatgacaatgagcaagaaaggatgatc
acagtgcgtgaaagaaatactactcacaaacaaattcacagatcctgggt
gaagaggaaacagatatgccaactaaggatgaatagaatatatttattaa
atcatagcagaaaatttcctaaatgcacctaatttcaatagaatttttcg
aacagcatagaccactaatgtacctttctgtgtgactctatagtaaacta
cagaaaaatgaatatagaaagatctaaaaagaagcactgtgggaccttga
aaggcagcctgttttctggttgagctaggtttaaaccctggagacccagc
tgataattctgcaagagatggaaggaaatttgccatgcacccaaacacca
gactgctgacaggaggccccatctccatacttctgtggccatcagtcaca
taggcaatgcctcaagcttctggtattctgtctggactccacccctacag
ttacctggcaataatcatgtaaacctggctcactataaaaggggctgttt
gcccctcctccctctgttactccttactcttgcctctctgtctctctctc
tctctgtgtctctctgactgtctctgtctctctcgctctcttgcactctt
gttccccctctctcctgcatccccttccccctctctccatgtggccaggg
ctggccactaattctctactatacatctctctgccatctactacctgctt
agctgccccttccagccatgacaataaaagccttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84013656_84014804
seq2: B6Ng01-298O22.b_45_1200 (reverse)

seq1  TCAGCCATTGGATGGA-TCACAGGGCCCCCAATAAAGGAGCTAGA-GAAA  48
      |||| |||||||| || ||||| ||||||||  || ||||||||| ||||
seq2  TCAG-CATTGGATTGATTCACACGGCCCCCATAAAGGGAGCTAGAGGAAA  49

seq1  GTACCCAA-GGAGCTAAAGGGAT-CTGCAACCCTATAGGTGG-AACAACA  95
      |||||||| |||||||| ||||| ||||||| |||||||||| |||||||
seq2  GTACCCAATGGAGCTAATGGGATCCTGCAACTCTATAGGTGGCAACAACA  99

seq1  ATATGAACTACCT-AGTACCCCC-ACAGAGCTCGT-GTCTCTAGCTGCAT  142
         |||||||||| ||||||||| ||||||||||| ||||||||||||||
seq2  TATTGAACTACCTAAGTACCCCCAACAGAGCTCGTGGTCTCTAGCTGCAT  149

seq1  ATGTAGCAGAAGATAGCCTAGTCAGCCATCAGTGGAAAGAGAGGCC-CAT  191
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTAGCAGAAGATAGCCTAGTCAGCCATCAGTGGAAAGAGAGGCCTCAT  199

seq1  TGGTCGTGCAAACTTTATATGCCTCAGTACAGAGGG-ATGCCAGGGCCAA  240
      |||||||||||   |||||||||||||||||||||| |||||||||||||
seq2  TGGTCGTGCAA--CTTATATGCCTCAGTACAGAGGGAATGCCAGGGCCAA  247

seq1  GAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGAGAGAGTATGGGGGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGAGAGAGTATGGGGGA  297

seq1  CTTTGGGGATAGCATTGGAAATGAAATTGAGGAAAATATGTAATAAAAAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGATAGCATTGGAAATGAAATTGAGGAAAATATGTAATAAAAAA  347

seq1  TATTTTTTAAAAAAGAACTTAGTAGAATCCTTTGAGAAAACCTATAACTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAAAAAAGAACTTAGTAGAATCCTTTGAGAAAACCTATAACTT  397

seq1  AGTCCTACATATTTGTTTGATATTAATGTCTATCTATTTTCTCTCAGACT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTACATATTTGTTTGATATTAATGTCTATCTATTTTCTCTCAGACT  447

seq1  TTTAGTTTAACACATTGGTAGTCTCCTGGAGTCTGATTAACCGTATCCTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTAACACATTGGTAGTCTCCTGGAGTCTGATTAACCGTATCCTA  497

seq1  TTCTAATCCAATCTCACATTCTGTTCATTATATGAGAATTCCATATAGAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCCAATCTCACATTCTGTTCATTATATGAGAATTCCATATAGAA  547

seq1  ACTTGTATTATTAGACAGAATTATTGTTTAAACTTATTTACTTTCTATTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATTATTAGACAGAATTATTGTTTAAACTTATTTACTTTCTATTT  597

seq1  TACTTGATTTTCAACAATAATATTTTATTTTCCTTTTTGATGCTATTTTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATTTTCAACAATAATATTTTATTTTCCTTTTTGATGCTATTTTG  647

seq1  GAAACTGTATCCTTTTCCAATTCTTTTAACAATTTTTCCTCAAAACTTAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTATCCTTTTCCAATTCTTTTAACAATTTTTCCTCAAAACTTAA  697

seq1  ACTTAACATGTACAGAATTTCATAGAATCAGGAGTTAGATTTTTTTTTAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACATGTACAGAATTTCATAGAATCAGGAGTTAGATTTTTTTTTAT  747

seq1  AAATACTAGCTGACTAATTTTGCTACATAATATTTTATTTGAAAGTTCTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTAGCTGACTAATTTTGCTACATAATATTTTATTTGAAAGTTCTT  797

seq1  TATAAAATTGTGTGAATTGTTTAAAACACACACAACAGCTCTTCTCAGCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTGTGTGAATTGTTTAAAACACACACAACAGCTCTTCTCAGCA  847

seq1  ATATATCCATTTCCACCCAGTTTTCTGGGATTTGGGGTCTGGCTTGGTTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCATTTCCACCCAGTTTTCTGGGATTTGGGGTCTGGCTTGGTTG  897

seq1  ATATTGTTGTTCTTATGGTTCTGCAAATCCCTTCAGTTCCTTCCGTCTGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTGTTCTTATGGTTCTGCAAATCCCTTCAGTTCCTTCCGTCTGA  947

seq1  ACTTTCCCCCTATTCACCTGGAGAGGGAAATAACCCCAAGTGAAAACTGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCCCTATTCACCTGGAGAGGGAAATAACCCCAAGTGAAAACTGT  997

seq1  TCTAGAGAATCCAGCAATTATATGTTTTGCAAAAAGTGAAGGTTTGCACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAATCCAGCAATTATATGTTTTGCAAAAAGTGAAGGTTTGCACA  1047

seq1  ATGACATAATCTTTGATGTGATTATTCTTTTGTGTCACTGTACTTTGCAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATAATCTTTGATGTGATTATTCTTTTGTGTCACTGTACTTTGCAG  1097

seq1  TAAACTCTATTTGTCTTGTTAAATAGTGGATAATTAGGGGCAGGGAGACA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTATTTGTCTTGTTAAATAGTGGATAATTAGGGGCAGGGAGACA  1147

seq1  AATGAATTC  1149
      |||||||||
seq2  AATGAATTC  1156

seq1: chr5_83904886_83905918
seq2: B6Ng01-298O22.g_66_1101

seq1  GAATTCAATAGATATTTATAAAGGTTTTCAGAAAAGAAAGGAAAGGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGATATTTATAAAGGTTTTCAGAAAAGAAAGGAAAGGAGCA  50

seq1  ACCAATAATTCACCCAGAAGATTGTGGATGAAATTTGAGAGAGTATAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAATTCACCCAGAAGATTGTGGATGAAATTTGAGAGAGTATAAAC  100

seq1  GGGGAGTTAAATGAAATAAGCAAATCAATGCAAGGAATGAATGAGGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTTAAATGAAATAAGCAAATCAATGCAAGGAATGAATGAGGAATT  150

seq1  CAGTACAGACAAATATTGCCAAAATAAAATTGAATGTTTGGAAATAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGACAAATATTGCCAAAATAAAATTGAATGTTTGGAAATAAGCA  200

seq1  GCTTAGTAAGGAAAAAATATCCGTTAGAAGCATCAGCAGCAGAATTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAAGGAAAAAATATCCGTTAGAAGCATCAGCAGCAGAATTGATC  250

seq1  AACAGAGAAACAAGAAGAGGGCTAATGACAATGAGCAAGAAAGGATGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAACAAGAAGAGGGCTAATGACAATGAGCAAGAAAGGATGATC  300

seq1  ACAGTGCGTGAAAGAAATACTACTCACAAACAAATTCACAGATCCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCGTGAAAGAAATACTACTCACAAACAAATTCACAGATCCTGGGT  350

seq1  GAAGAGGAAACAGATATGCCAACTAAGGATGAATAGAATATATTTATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAACAGATATGCCAACTAAGGATGAATAGAATATATTTATTAA  400

seq1  ATCATAGCAGAAAATTTCCTAAATGCACCTAATTTCAATAGAATTTTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCAGAAAATTTCCTAAATGCACCTAATTTCAATAGAATTTTTCG  450

seq1  AACAGCATAGACCACTAATGTACCTTTCTGTGTGACTCTATAGTAAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATAGACCACTAATGTACCTTTCTGTGTGACTCTATAGTAAACTA  500

seq1  CAGAAAAATGAATATAGAAAGATCTAAAAAGAAGCACTGTGGGACCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATGAATATAGAAAGATCTAAAAAGAAGCACTGTGGGACCTTGA  550

seq1  AAGGCAGCCTGTTTTCTGGTTGAGCTAGGTTTAAACCCTGGAGACCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCCTGTTTTCTGGTTGAGCTAGGTTTAAACCCTGGAGACCCAGC  600

seq1  TGATAATTCTGCAAGAGATGGAAGGAAATTTGCCATGCACCCAAACACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTCTGCAAGAGATGGAAGGAAATTTGCCATGCACCCAAACACCA  650

seq1  GACTGCTGACAGGAGGCCCCATCTCCATACTTCTGTGGCCATCAGTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGACAGGAGGCCCCATCTCCATACTTCTGTGGCCATCAGTCACA  700

seq1  TAGGCAATGCCTCAAGCTTCTGGTATTCTGTCTGGACTCCACCCCTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAATGCCTCAAGCTTCTGGTATTCTGTCTGGACTCCACCCCTACAG  750

seq1  TTACCTGGCAATAATCAGGTAAACCTGGCTCACTATAAAAGGGGCTGTTT  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTACCTGGCAATAATCATGTAAACCTGGCTCACTATAAAAGGGGCTGTTT  800

seq1  GCCCCTCCTCCCTCTGTTACTCCTTACTCTTGCCTCTCTGTCTCTCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCTCCCTCTGTTACTCCTTACTCTTGCCTCTCTGTCTCTCTCTC  850

seq1  TCTCTGTGTCTCTCTGTCTGTCTCTGTCTCTCTCGCTCTCTTGCACTCTT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTCTCTCTGACTGTCTCTGTCTCTCTCGCTCTCTTGCACTCTT  900

seq1  GTTCCCCCTCTCTCCTGCATCCCCTTCCCCCTCTCTCCATGTGGCCAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCCTCTCTCCTGCATCCCCTTCCCCCTCTCTCCATGTGGCCAGGG  950

seq1  CTGGCCACTAATTCTCTACT-TTCCTCTCTCTGCC-TCTACTACCTGCTT  998
      |||||||||||||||||||| | | |||||||||| ||||||||||||||
seq2  CTGGCCACTAATTCTCTACTATACATCTCTCTGCCATCTACTACCTGCTT  1000

seq1  AGCT-CCCCTTCCAGCCATGACAATAAAAGCCTTAA  1033
      |||| |||||||||||||||||||||||||||||||
seq2  AGCTGCCCCTTCCAGCCATGACAATAAAAGCCTTAA  1036