BAC Information

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BAC

Clone NameB6Ng01-299A02
Chromosome5 (Build37)
Map Location 28,108,828 - 28,109,965
singlet/doubletsinglet
Overlap genePaxip1
Upstream geneDpp6, B930011P16Rik, Speer4b
Downstream geneHtr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299A02.bB6Ng01-299A02.g
ACCGA093966GA093967
length4941,152
definitionB6Ng01-299A02.b B6Ng01-299A02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttagctctgagccccattttttaatggggttatttgattttctgg
agtccaccttcttaagttctttatatatattggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctttttgt
cttattgacagtgtcttttgccttaaagaagctttgcaattttatgaggt
cccatttgtccattcttgatcttacagcacaagccattgctgttctattc
aggaatttttcccctgtgcccatatctttgaggcttttccccactttctc
ctctataagtttcactgtctctgattttatgtggagttccttgatccact
tagatttgaccttagtacaagagataggaatggatcaattctcattcttc
tacatgataactgccagttgtgccagcaccatttttttttcttttttaat
atttttattaggtattttcctcatttacatttccaatgctatcc
gaattctaaatcaggtgaggaagtacgaataactcctagaacatgaggag
gaagttctgagtttgaaggcatgtgtttgtcttttcagttagatgcatgg
aaagtttattattttacacttcctacccagcacttgctctggtgtgaaaa
tagagtgatgaagaccttattctgggactaggggttgcagctcagttata
gaaggctatcttaattttgggtcctgggctcagtccccagcactgtatga
attgggcatattggcgcatgctcataatccgaacacttgggaggtagaag
caagaagatcaatagttgaagcttatccttggcttcataagagagagttc
aaggctaccctgggctgtatgagaccctgtctcaaaacaaaccaaaagca
aactcactctgcactgtgtagcctcctccttacctgtgtccaccatgtca
tattttcatgctcagggtcctgtgttgtgtcccaactgggccactcctca
ccattgctgtcttgctggaggcttactggcttctgcttcactgttggtat
gaagcttaactggagaggctgtcctagcagagcctggcttaggaaattac
ttctgccatctcgtaccaatgctgaagttgaggccggggtttgggatggg
taccatcattcagctgctttgatatacagctgtgcctggcagctcttgaa
tgcacatccatctttcaagactgagcagagggactcaactcagatacaaa
tgagacattcccaagggccttagatgcttaagccttcctctcagcagctc
ttcttagaggatgtagttctggttccgaaatgctcattcattctttcttt
ataagcataggtttcaaacagacaagcaaaccaaccctggggaaaggtgg
acctttctaagatggagtcaagggttctatccctggtgtcttttctggac
tcttctctataccaggcttccttaggaagctgtaggttgattggagctct
tggactattctggtccataaagaagctataagcacaggaacaaaaggcca
aggactgggatgaatagtcagctggggaatttgttgggatcctccccaac
ccctcttttaagagagagaagcttgcagctagatgtccaggtgggaaaag
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_28108828_28109965
seq2: B6Ng01-299A02.g_66_1217 (reverse)

seq1  CCCTTT---CACCTTGACATCTAACTTCAAGGCTTCTCTC-CT--AAAGA  44
      ||||||   ||||| |||||||| || ||| ||||||||| ||  |||||
seq2  CCCTTTTCCCACCTGGACATCTAGCTGCAA-GCTTCTCTCTCTTAAAAGA  49

seq1  GGGGGTGGGGGAGAGACCAACAAA-TCCCAGGTTGACTA-TCAT-CCAGT  91
      |||| |||||  ||  |||||||| ||||  | |||||| |||| |||||
seq2  GGGGTTGGGGAGGATCCCAACAAATTCCCCAGCTGACTATTCATCCCAGT  99

seq1  -CTTGGGCCTTTGTT-CTGTTGCTATAGGCTTCTTTATGGA-CAG-ATAG  137
       ||||| | |||||| ||||   |||| ||||||||||||| ||| ||||
seq2  CCTTGGCCTTTTGTTCCTGTGCTTATA-GCTTCTTTATGGACCAGAATAG  148

seq1  T-CAAGAGCT-CAATCAACCTACAGCTTCCTAAGGAAGCCTGGTATAGAG  185
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAGCTCCAATCAACCTACAGCTTCCTAAGGAAGCCTGGTATAGAG  198

seq1  AAAGAGTCCAGAAAAGACACCAGGGATAGAACCCTTGACTCCATCTTAGA  235
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAGAGTCCAGAAAAGACACCAGGGATAGAACCCTTGACTCCATCTTAGA  247

seq1  AAGGTCCACCTT--CCCAGGGTTGGTTTGCTTGTCTGTTTGAAACCTATG  283
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCACCTTTCCCCAGGGTTGGTTTGCTTGTCTGTTTGAAACCTATG  297

seq1  CTTATAAAGAAAGAATGAATGAGCATTTCGGAACCAGAACTACATCCTCT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAGAAAGAATGAATGAGCATTTCGGAACCAGAACTACATCCTCT  347

seq1  AAGAAGAGCTGCTGAGAGGAAGGCTTAAGCATCTAAGGCCCTTGGGAATG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGCTGCTGAGAGGAAGGCTTAAGCATCTAAGGCCCTTGGGAATG  397

seq1  TCTCATTTGTATCTGAGTTGAGTCCCTCTGCTCAGTCTTGAAAGATGGAT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTGTATCTGAGTTGAGTCCCTCTGCTCAGTCTTGAAAGATGGAT  447

seq1  GTGCATTCAAGAGCTGCCAGGCACAGCTGTATATCAAAGCAGCTGAATGA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTCAAGAGCTGCCAGGCACAGCTGTATATCAAAGCAGCTGAATGA  497

seq1  TGGTACCCATCCCAAACCCCGGCCTCAACTTCAGCATTGGTACGAGATGG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCCATCCCAAACCCCGGCCTCAACTTCAGCATTGGTACGAGATGG  547

seq1  CAGAAGTAATTTCCTAAGCCAGGCTCTGCTAGGACAGCCTCTCCAGTTAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAATTTCCTAAGCCAGGCTCTGCTAGGACAGCCTCTCCAGTTAA  597

seq1  GCTTCATACCAACAGTGAAGCAGAAGCCAGTAAGCCTCCAGCAAGACAGC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATACCAACAGTGAAGCAGAAGCCAGTAAGCCTCCAGCAAGACAGC  647

seq1  AATGGTGAGGAGTGGCCCAGTTGGGACACAACACAGGACCCTGAGCATGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGAGGAGTGGCCCAGTTGGGACACAACACAGGACCCTGAGCATGA  697

seq1  AAATATGACATGGTGGACACAGGTAAGGAGGAGGCTACACAGTGCAGAGT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGACATGGTGGACACAGGTAAGGAGGAGGCTACACAGTGCAGAGT  747

seq1  GAGTTTGCTTTTGGTTTGTTTTGAGACAGGGTCTCATACAGCCCAGGGTA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCTTTTGGTTTGTTTTGAGACAGGGTCTCATACAGCCCAGGGTA  797

seq1  GCCTTGAACTCTCTCTTATGAAGCCAAGGATAAGCTTCAACTATTGATCT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACTCTCTCTTATGAAGCCAAGGATAAGCTTCAACTATTGATCT  847

seq1  TCTTGCTTCTACCTCCCAAGTGTTCGGATTATGAGCATGCGCCAATATGC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTCTACCTCCCAAGTGTTCGGATTATGAGCATGCGCCAATATGC  897

seq1  CCAATTCATACAGTGCTGGGGACTGAGCCCAGGACCCAAAATTAAGATAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCATACAGTGCTGGGGACTGAGCCCAGGACCCAAAATTAAGATAG  947

seq1  CCTTCTATAACTGAGCTGCAACCCCTAGTCCCAGAATAAGGTCTTCATCA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTATAACTGAGCTGCAACCCCTAGTCCCAGAATAAGGTCTTCATCA  997

seq1  CTCTATTTTCACACCAGAGCAAGTGCTGGGTAGGAAGTGTAAAATAATAA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTCACACCAGAGCAAGTGCTGGGTAGGAAGTGTAAAATAATAA  1047

seq1  ACTTTCCATGCATCTAACTGAAAAGACAAACACATGCCTTCAAACTCAGA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCATGCATCTAACTGAAAAGACAAACACATGCCTTCAAACTCAGA  1097

seq1  ACTTCCTCCTCATGTTCTAGGAGTTATTCGTACTTCCTCACCTGATTTAG  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCCTCATGTTCTAGGAGTTATTCGTACTTCCTCACCTGATTTAG  1147

seq1  AATTC  1138
      |||||
seq2  AATTC  1152