BAC Information

Click to search

BAC

Clone NameB6Ng01-299A22
Chromosome5 (Build37)
Map Location 25,038,452 - 25,197,496
singlet/doubletdoublet
Overlap geneXrcc2
Upstream geneAsb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443
Downstream geneLOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299A22.bB6Ng01-299A22.g
ACCGA094003GA094004
length1,078590
definitionB6Ng01-299A22.b B6Ng01-299A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,196,411 - 25,197,496)(25,038,452 - 25,039,041)
sequence
gaattccaggatagccagagctacataatgaggtcctgcttcaaagagct
actcaggaaacagatagctaggtaaatagatgagactagaatgttcgagt
cttcctccttcctctcgcccatttttcttctttctacctgctccccttgt
cccaaggatgtcctatagttcaggcaagtcttcatcacatttctgcctct
gaggtagccaggtaaacaatgttgctccttggagctgagaattctgataa
gttgcacttgaagatgaatgtctatgatttggggttctgtgtaatttttc
acacacagggaaatgatgtactcactttcgaattcggaagttcattttgg
aatgttcatctcactaattgatagatctgaagagttatactagatgcctt
ggaacatctaggctgttatttccagctgtgcgctgagggagacttggcac
tgctcaggaggtgtcctagtgaagattactgttgtcatgaccaagcactg
tgagcaaaagactgttggagaggaaagggtttgttataaggtttacactt
ctcttgtatattgtagtccatatttgaaggaagtcaggacaggaacttag
gaagggcaggaactttgaggcaggtgtcaatacaaagtccatggagggtg
ctgcttcctggtttgctccacgattgatcataatgcctactgcctgatct
tatggagacatcttctcaactgaagctccctcctctctggtgactctagt
ttgtgtcaagctgacataaaactagccggcacagagtacctgtaggaaga
aggctttagaaaatccctttacatcttctgacccagggaaaggcccacat
gtgagttcagactaactgctattctcaaacctgttaatgcctatgtcaca
aacgatcctgtttccctttgttctgtggctttgttcactcattaccacag
gtttatgagttaaaaagcatcctgttgagagctgagactaaagtcttcac
tatgaggcacagcatgtaactgctgtctgtgccctacctgtgtccctggg
ctgcttgtattaccccagggcctctgag
gaattcagtatgtatcctaggctggcctcaagttttagagactcctctgg
cctcagacttctgtattgctgagataaaggcctatgccactaggcacagc
ttatttttcttaaacgttttaatgcagtgtgtcattttaaaactggccaa
tcacgtaagaaaaactacttggtgtgagcaaggaagagctgcctcccacc
cccttgccagctgctgcaggagggagggcagccctcttgcctaggcagca
cctcccttgagagctggtagagctggcgctggtggtgtgctggggagtca
ggcctgagagatagcgttctggaaagctagccctgtcccttgaagccggc
tgcaggcaagggagctgcccttccccccctcccttttttttttttttttt
ttccccctgggcaaagcaggagaattggcaagctgaccaactcaactaac
acccacccagatccaggggctttgggtggcgcacgcctttaataccagca
ctcgggaggcagaggcaggcggatttctgagttccaggccagcctggtct
acagagtaagtttccgtgacagcggggagggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_25196411_25197496
seq2: B6Ng01-299A22.b_46_1123 (reverse)

seq1  CTCAGAAGCCCTGGGGTAAATACAAGCAGGCCCAGGGACACAGGTAGGGC  50
      |||||| |||||||||| |||||||||| |||||||||||||||||||||
seq2  CTCAGAGGCCCTGGGGT-AATACAAGCA-GCCCAGGGACACAGGTAGGGC  48

seq1  ACAGACAGCAAGTTACATGGCTGTGCCTTCATAGTGAAGAACTTTAGTCT  100
      ||||||||| |||||||| |||||||| ||||||||||| ||||||||||
seq2  ACAGACAGC-AGTTACAT-GCTGTGCC-TCATAGTGAAG-ACTTTAGTCT  94

seq1  CAGCTTCTCAACAGGATGCTTTTTAACTCATAAACCTGTGGTAATGAGTG  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGC-TCTCAACAGGATGCTTTTTAACTCATAAACCTGTGGTAATGAGTG  143

seq1  AACAAAGCCACAAGAACAAAGGGAAACAGGATCGTTTGTGACATAGGCAT  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCCAC-AGAACAAAGGGAAACAGGATCGTTTGTGACATAGGCAT  192

seq1  TAACAGGTTTGAGAATAGCAGTTAGTCTGAACTCACATGTGGGCCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTTTGAGAATAGCAGTTAGTCTGAACTCACATGTGGGCCTTTCC  242

seq1  CTGGGTCAGAAGATGTAAAGGGATTTTCTAAAGCCTTCTTCCTACAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCAGAAGATGTAAAGGGATTTTCTAAAGCCTTCTTCCTACAGGTA  292

seq1  CTCTGTGCCGGCTAGTTTTATGTCAGCTTGACACAAACTAGAGTCACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCCGGCTAGTTTTATGTCAGCTTGACACAAACTAGAGTCACCAG  342

seq1  AGAGGAGGGAGCTTCAGTTGAGAAGATGTCTCCATAAGATCAGGCAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGAGCTTCAGTTGAGAAGATGTCTCCATAAGATCAGGCAGTAG  392

seq1  GCATTATGATCAATCGTGGAGCAAACCAGGAAGCAGCACCCTCCATGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATGATCAATCGTGGAGCAAACCAGGAAGCAGCACCCTCCATGGAC  442

seq1  TTTGTATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTTCCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTTCCTGTCC  492

seq1  TGACTTCCTTCAAATATGGACTACAATATACAAGAGAAGTGTAAACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCTTCAAATATGGACTACAATATACAAGAGAAGTGTAAACCTTA  542

seq1  TAACAAACCCTTTCCTCTCCAACAGTCTTTTGCTCACAGTGCTTGGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACCCTTTCCTCTCCAACAGTCTTTTGCTCACAGTGCTTGGTCAT  592

seq1  GACAACAGTAATCTTCACTAGGACACCTCCTGAGCAGTGCCAAGTCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGTAATCTTCACTAGGACACCTCCTGAGCAGTGCCAAGTCTCCC  642

seq1  TCAGCGCACAGCTGGAAATAACAGCCTAGATGTTCCAAGGCATCTAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCACAGCTGGAAATAACAGCCTAGATGTTCCAAGGCATCTAGTAT  692

seq1  AACTCTTCAGATCTATCAATTAGTGAGATGAACATTCCAAAATGAACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCAGATCTATCAATTAGTGAGATGAACATTCCAAAATGAACTTC  742

seq1  CGAATTCGAAAGTGAGTACATCATTTCCCTGTGTGTGAAAAATTACACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTCGAAAGTGAGTACATCATTTCCCTGTGTGTGAAAAATTACACAG  792

seq1  AACCCCAAATCATAGACATTCATCTTCAAGTGCAACTTATCAGAATTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAATCATAGACATTCATCTTCAAGTGCAACTTATCAGAATTCTC  842

seq1  AGCTCCAAGGAGCAACATTGTTTACCTGGCTACCTCAGAGGCAGAAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAGGAGCAACATTGTTTACCTGGCTACCTCAGAGGCAGAAATGT  892

seq1  GATGAAGACTTGCCTGAACTATAGGACATCCTTGGGACAAGGGGAGCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGACTTGCCTGAACTATAGGACATCCTTGGGACAAGGGGAGCAGG  942

seq1  TAGAAAGAAGAAAAATGGGCGAGAGGAAGGAGGAAGACTCGAACATTCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAAGAAAAATGGGCGAGAGGAAGGAGGAAGACTCGAACATTCTA  992

seq1  GTCTCATCTATTTACCTAGCTATCTGTTTCCTGAGTAGCTCTTTGAAGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCTATTTACCTAGCTATCTGTTTCCTGAGTAGCTCTTTGAAGCA  1042

seq1  GGACCTCATTATGTAGCTCTGGCTATCCTGGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  GGACCTCATTATGTAGCTCTGGCTATCCTGGAATTC  1078

seq1: chr5_25038452_25039041
seq2: B6Ng01-299A22.g_67_656

seq1  GAATTCAGTATGTATCCTAGGCTGGCCTCAAGTTTTAGAGACTCCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATGTATCCTAGGCTGGCCTCAAGTTTTAGAGACTCCTCTGG  50

seq1  CCTCAGACTTCTGTATTGCTGAGATAAAGGCCTATGCCACTAGGCACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACTTCTGTATTGCTGAGATAAAGGCCTATGCCACTAGGCACAGC  100

seq1  TTATTTTTCTTAAACGTTTTAATGCAGTGTGTCATTTTAAAACTGGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTTAAACGTTTTAATGCAGTGTGTCATTTTAAAACTGGCCAA  150

seq1  TCACGTAAGAAAAACTACTTGGTGTGAGCAAGGAAGAGCTGCCTCCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTAAGAAAAACTACTTGGTGTGAGCAAGGAAGAGCTGCCTCCCACC  200

seq1  CCCTTGCCAGCTGCTGCAGGAGGGAGGGCAGCCCTCTTGCCTAGGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCCAGCTGCTGCAGGAGGGAGGGCAGCCCTCTTGCCTAGGCAGCA  250

seq1  CCTCCCTTGAGAGCTGGTAGAGCTGGCGCTGGTGGTGTGCTGGGGAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTGAGAGCTGGTAGAGCTGGCGCTGGTGGTGTGCTGGGGAGTCA  300

seq1  GGCCTGAGAGATAGCGTTCTGGAAAGCTAGCCCTGTCCCTTGAAGCCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGAGATAGCGTTCTGGAAAGCTAGCCCTGTCCCTTGAAGCCGGC  350

seq1  TGCAGGCAAGGGAGCTGCCCTTCCCCCCCTCCCTTTTTTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAAGGGAGCTGCCCTTCCCCCCCTCCCTTTTTTTTTTTTTTTTT  400

seq1  TTCCCCCTGGGCAAAGCAGGAGAATTGGCAAGCTGACCAACTCAACTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTGGGCAAAGCAGGAGAATTGGCAAGCTGACCAACTCAACTAAC  450

seq1  ACCCACCCAGATCCAGGGGCTTTGGGTGGCGCACGCCTTTAATACCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCAGATCCAGGGGCTTTGGGTGGCGCACGCCTTTAATACCAGCA  500

seq1  CTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCCAGGCCAGCCTGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCCAGGCCAGCCTGGTCT  550

seq1  ACAGAGTAAGTTTCCGTGACAGCGGGGAGGGGGGGTGGGG  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAAGTTTCCGTGACAGCGGGGAGGGGGGGTGGGG  590