BAC Information

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BAC

Clone NameB6Ng01-299H13
Chromosome5 (Build37)
Map Location 40,320,255 - 40,321,382
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299H13.bB6Ng01-299H13.g
ACCGA094304GA094305
length1,1161,181
definitionB6Ng01-299H13.b B6Ng01-299H13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttccctactgttttgagacataggcttgctatgcagtctaaga
caggcccaatctcatcatgtagatttaaagaagccagaaactaaagagat
atacttcaggaactacaggcaagaagtcatctaaaaaatgaccttaggaa
ttaatttattatcaccgtactataaaattcttcaaagatctcaagaatca
gtgtatttttcattaggaagattgcagaacatttgatgttggtagccaga
gtggagttttaaagagaagatactcttttatattcctctcattaagaggt
gggttctgtctctgtgatctcctttttctcagagtataggtagaaataag
aacacttttgggttttcttgcctacattagaagttggcagttctttatct
agcttgtgaaatggctgtccttgatttcagaaaacacaatgtgaaaaagc
acaggatagctgaatctaagcaagtatacatctcttcattctttgccctt
gactatggctgtgacaccagctgcttgagtttctgacctggattcttcag
tggtggactgttacctagaaatgtaaaccaaatgtcttttgtttattcag
catcataaatgattttagaaaagcagctatagattataggtaactgaagg
aaggacataggtgtgctcatattttattagtcacaactgattcttcagcc
tcaactgaccagaaaccgtaagtttgtagtacaaaatatcacacaagtgg
cctttgcagagtccttgatttcctctgaaactttacaagccgtgcctctg
ctttctgtatctcccttagcatttgcatcttctaaatttccataggatct
cagtgagctctgcacactaaataacctattccactccaaatctcaaaaca
tcataacaaataaagctaaactaaacaaaaacaccaacatggtcaggtct
gttacagaaatgccttattctctgaaattgatgtatttcctaatttttcc
tatgctatatgaaacatgacaaaaagtcacttgaggaagcaaggcttcac
ttcaccttataatcatcacataggagagtcatgcagagctcagggcaaga
tctgggaaatagaaaa

gaattctttgtttatctctgagtcccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctaatttaggataggtaaagatcctttcccaatctgttggtggact
ttttgtcttattgaaggtgtcttttgccttgcagaagctttgcagtttca
ggaggtcccatttgtccattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcgaggcttttctccac
tttctcctctataagtttcagtatctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaattaatcaattcac
attcttctacatgataaccaccagttgtgccaacaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtctaaaatcaagt
gaccataagtgtgtgggttcatttctgcgtcttcaattctattcccttgg
tctacttgtctgtcgctataccagtaccatgcagtttttattacaattgc
tctgtagtacagctttaggtcaggcatggtgattccacaaaaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatgggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatactgccaatccataatcatggggagatctttccatctt
ctgagatcttcttttaatttctttcttcagagacgtggaagttcttacca
tacagatctttcactttccttagagtcacacacgatattttttacttatt
ttgttgactattgagaatggccggttgttcccgaatttctttctcagcct
tgttttattcttttgtgtagcaatggccaattgacctttgttcgtgttta
attttaatatgcagctatttccatggagcttgtttatcaaggtttaagga
agtctctgggttgatcttacggttcacgttattcatacctagtcatattc
acttagcgcagaaagaagagggatagtcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40320255_40321382
seq2: B6Ng01-299H13.b_48_1163

seq1  GAATTCTTTCCCTACTGTTTTGAGACATAGGCTTGCTATGCAGTCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCTACTGTTTTGAGACATAGGCTTGCTATGCAGTCTAAGA  50

seq1  CAGGCCCAATCTCATCATGTAGATTTAAAGAAGCCAGAAACTAAAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCAATCTCATCATGTAGATTTAAAGAAGCCAGAAACTAAAGAGAT  100

seq1  ATACTTCAGGAACTACAGGCAAGAAGTCATCTAAAAAATGACCTTAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAGGAACTACAGGCAAGAAGTCATCTAAAAAATGACCTTAGGAA  150

seq1  TTAATTTATTATCACCGTACTATAAAATTCTTCAAAGATCTCAAGAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATTATCACCGTACTATAAAATTCTTCAAAGATCTCAAGAATCA  200

seq1  GTGTATTTTTCATTAGGAAGATTGCAGAACATTTGATGTTGGTAGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTTCATTAGGAAGATTGCAGAACATTTGATGTTGGTAGCCAGA  250

seq1  GTGGAGTTTTAAAGAGAAGATACTCTTTTATATTCCTCTCATTAAGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTTTAAAGAGAAGATACTCTTTTATATTCCTCTCATTAAGAGGT  300

seq1  GGGTTCTGTCTCTGTGATCTCCTTTTTCTCAGAGTATAGGTAGAAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGTCTCTGTGATCTCCTTTTTCTCAGAGTATAGGTAGAAATAAG  350

seq1  AACACTTTTGGGTTTTCTTGCCTACATTAGAAGTTGGCAGTTCTTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTGGGTTTTCTTGCCTACATTAGAAGTTGGCAGTTCTTTATCT  400

seq1  AGCTTGTGAAATGGCTGTCCTTGATTTCAGAAAACACAATGTGAAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGAAATGGCTGTCCTTGATTTCAGAAAACACAATGTGAAAAAGC  450

seq1  ACAGGATAGCTGAATCTAAGCAAGTATACATCTCTTCATTCTTTGCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATAGCTGAATCTAAGCAAGTATACATCTCTTCATTCTTTGCCCTT  500

seq1  GACTATGGCTGTGACACCAGCTGCTTGAGTTTCTGACCTGGATTCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGGCTGTGACACCAGCTGCTTGAGTTTCTGACCTGGATTCTTCAG  550

seq1  TGGTGGACTGTTACCTAGAAATGTAAACCAAATGTCTTTTGTTTATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGACTGTTACCTAGAAATGTAAACCAAATGTCTTTTGTTTATTCAG  600

seq1  CATCATAAATGATTTTAGAAAAGCAGCTATAGATTATAGGTAACTGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAATGATTTTAGAAAAGCAGCTATAGATTATAGGTAACTGAAGG  650

seq1  AAGGACATAGGTGTGCTCATATTTTATTAGTCACAACTGATTCTTCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATAGGTGTGCTCATATTTTATTAGTCACAACTGATTCTTCAGCC  700

seq1  TCAACTGACCAGAAACCGTAAGTTTGTAGTACAAAATATCACACAAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGACCAGAAACCGTAAGTTTGTAGTACAAAATATCACACAAGTGG  750

seq1  CCTTTGCAGAGTCCTTGATTTCCTCTGAAACTTTACAAGCCGTGCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAGAGTCCTTGATTTCCTCTGAAACTTTACAAGCCGTGCCTCTG  800

seq1  CTTTCTGTATCTCCCTTAGCATTTGCATCTTCTAAATTTCCATAGGATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTATCTCCCTTAGCATTTGCATCTTCTAAATTTCCATAGGATCT  850

seq1  CAGTGAGCTCTGCACACTAAATAACCTATTCCACTCCAAATCTCAAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCTCTGCACACTAAATAACCTATTCCACTCCAAATCTCAAAACA  900

seq1  TCATAACAAAATAAAGCTAAACTAAACAAAAACACCAACATGGTCAGGTC  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAC-AAATAAAGCTAAACTAAACAAAAACACCAACATGGTCAGGTC  949

seq1  TGTTACAGAAATGCCTTATTCTCTGAAATTGATGTATTTCCTAATTTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTTACAGAAATGCCTTATTCTCTGAAATTGATGTATTTCCTAATTTTT-  998

seq1  CCTATTGCTATTATGAAACAATTGACAAAAAGTCAACTTGAGGAAGCAAA  1050
      |||| ||||| |||||||||  |||||||||||| |||||||||||| ||
seq2  CCTA-TGCTA-TATGAAACA--TGACAAAAAGTC-ACTTGAGGAAGC-AA  1042

seq1  GGCTTCACCTTCCACCTTATATCCATCACATAGGAGAGTCATGGCAGAAG  1100
      ||||||||  | |||||||||  ||||||||||||||||||| |||| ||
seq2  GGCTTCAC--TTCACCTTATAATCATCACATAGGAGAGTCAT-GCAG-AG  1088

seq1  CCCAGGGCAAGAACCTGGAAATAGAAAA  1128
      | |||||||||| |  ||||||||||||
seq2  CTCAGGGCAAGATCTGGGAAATAGAAAA  1116


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