BAC Information

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BAC

Clone NameB6Ng01-299L05
Chromosome5 (Build37)
Map Location 20,740,632 - 20,890,881
singlet/doubletdoublet
Overlap geneA530088I07Rik, Fgl2
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903
Downstream geneAI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299L05.bB6Ng01-299L05.g
ACCGA094468GA094469
length1,0671,087
definitionB6Ng01-299L05.b B6Ng01-299L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,889,823 - 20,890,881)(20,740,632 - 20,741,731)
sequence
gaattcttcttatacattcataagaattctttgtatttatatattacgaa
ggctgtctcgactagtgtgcattcttctagtttatcgaataattgttttt
agcttgctcctcgttgtttattccctgtgtggaaattcatctttcaatgt
gcttggatcaatctatcgtttctttgcagctctgggattttgttatactt
tgaaagacctttgttactctgaggctatgtatttgtttcctgtgttttct
catgataccatgaagatctgagtcatattttaacctttgccccatctggt
agagtcggtgtggtggcaaacaggaacagcttagaacccaaggccaagtc
cattatcctctgtacgaaagtactgttcctattcctgcccacgtcaatca
attggaggcaaacagggacacctcggtcggggaaaaatattagtgggagg
gcagaagaatcagctggtattaaccctcagaatcagaagatagtgttgct
acctgtaatgggaacaactgcacgggcaggctttgaacagcttaaatctt
aataatctgatggggaacgatcagttggtgataaggtggctagacagagc
tgctcttagttccagctctgtgtgctagttgtcaggcagtcgtttaggtt
ctctgggccttgatttagatcattgatacagtttttcagttcaagttcct
tcttcacggtggcctcattgcttactgcggtaatgcccatcatttctgga
ttcttttggtcttttctctcctcccccatagaattcatatataagtactc
tctgtattcacgtcaccatcagccctgccccccatcactatcagcccctc
ccccaccaccatcaccatcagccccttccccctccatatcactatcaacc
tatccctctctcccctgcttccctccagagggaccacttggagaaccctt
gcataaggctatgtgtgtgtgaatgcttacaactcaacattttcccttca
ctgggcccttgatacacagcaaggtgtggagggtatgtagatttcccttg
cagtaaagtccttgata
gaattccaggccaagccagggcttcactgcagaactctaacaaaacaaag
caaacctgcttcagggatgctcagccaggaaagcctatttcagagtctga
aagagtctaaaatgtgaagtgtttgttcttcaggcaattttgatgaggga
tgctcaacatggagcagattaagtataatgtcttcattggtcggcaactg
acattagccacagatactgcagggggggaatacagagttttatatactga
gaaagaaggggaggccgtgctaggtggtcccctttgacatgggccaacac
tgtcagggccccagctttgatgagcttagcctcacatattgtattgactc
tctttgctcataggaaaggtccatggttcacgtttcagcgttgcttaagt
aatattggatgctttctttagagataacacaatttggatatctggggtcc
agagctatgtgagatgccctttgggggacagctaggtaagacggcagtgt
gtgcacattagccagaacttcatggtggtgggacctttgctagactactg
cagcttcttcccatatgtctgatcatttcccactcttcattgcctgccaa
agtgtgttattaaacgcgttctcacgcccggccaggaagaacacaacaga
ccagaatcttctgcggcaaaactttattgcttacatcttcaggagcaaga
gtgtaagaagcaagagagcgagaaaacgaaaccccgtccctattaaggag
aattatccttcgcctaggacgtgtcactccctgattggctgcagcccatc
ggccgagttgacgtcacggggaagggcagagcacatggagtggagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtggcgcggctcccaacatctccccct
ttccttttaataagagcaaatagccacccatataatgagagtggagatag
agtcaatccccagtgtgtagtaaggagccatgtacaggatagctcttagg
ctcacagctttaccagagcacctgacctgctccgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_20889823_20890881
seq2: B6Ng01-299L05.b_46_1112 (reverse)

seq1  TTTCAAGG-CTTT-CTGC-AGGGGAATCTACATACCCTCCACACCCTGCT  47
      | |||||| |||| |||| |||| ||||||||||||||||||||| ||||
seq2  TATCAAGGACTTTACTGCAAGGGAAATCTACATACCCTCCACACCTTGCT  50

seq1  GTGTATCAAGG--CCAGTGAA-GGAAAATGTTGAGTTGTAAGCAATTCAC  94
      |||||||||||  |||||||| ||||||||||||||||||||| ||||||
seq2  GTGTATCAAGGGCCCAGTGAAGGGAAAATGTTGAGTTGTAAGC-ATTCAC  99

seq1  ACACACATAGCC-TATGCAAGGTTTCTCCCAGTGGTCCCTCTGGAGGG-A  142
      |||||||||||| ||||||||| |||||| |||||||||||||||||| |
seq2  ACACACATAGCCTTATGCAAGGGTTCTCCAAGTGGTCCCTCTGGAGGGAA  149

seq1  GCAGGGGAGAGAGGGATAGGTTGATAGTGATATGGAGGGGG-AGGGGCTG  191
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCAGGGGAGAGAGGGATAGGTTGATAGTGATATGGAGGGGGAAGGGGCTG  199

seq1  ATGGTGATGGTGGTGGGGGAGGGGCTGATAGTGATGGGGGGCAGGGCTGA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATGGTGGTGGGGGAGGGGCTGATAGTGATGGGGGGCAGGGCTGA  249

seq1  TGGTGACGTGAATACAGAGAGTACTTATATATGAATTCTATGGGGGAGGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACGTGAATACAGAGAGTACTTATATATGAATTCTATGGGGGAGGA  299

seq1  GAGAAAAGACCAAAAGAATCCAGAAATGATGGGCATTACCGCAGTAAGCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGACCAAAAGAATCCAGAAATGATGGGCATTACCGCAGTAAGCA  349

seq1  ATGAGGCCACCGTGAAGAAGGAACTTGAACTGAAAAACTGTATCAATGAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCCACCGTGAAGAAGGAACTTGAACTGAAAAACTGTATCAATGAT  399

seq1  CTAAATCAAGGCCCAGAGAACCTAAACGACTGCCTGACAACTAGCACACA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAAGGCCCAGAGAACCTAAACGACTGCCTGACAACTAGCACACA  449

seq1  GAGCTGGAACTAAGAGCAGCTCTGTCTAGCCACCTTATCACCAACTGATC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAACTAAGAGCAGCTCTGTCTAGCCACCTTATCACCAACTGATC  499

seq1  GTTCCCCATCAGATTATTAAGATTTAAGCTGTTCAAAGCCTGCCCGTGCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCATCAGATTATTAAGATTTAAGCTGTTCAAAGCCTGCCCGTGCA  549

seq1  GTTGTTCCCATTACAGGTAGCAACACTATCTTCTGATTCTGAGGGTTAAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCCATTACAGGTAGCAACACTATCTTCTGATTCTGAGGGTTAAT  599

seq1  ACCAGCTGATTCTTCTGCCCTCCCACTAATATTTTTCCCCGACCGAGGTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGATTCTTCTGCCCTCCCACTAATATTTTTCCCCGACCGAGGTG  649

seq1  TCCCTGTTTGCCTCCAATTGATTGACGTGGGCAGGAATAGGAACAGTACT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTTGCCTCCAATTGATTGACGTGGGCAGGAATAGGAACAGTACT  699

seq1  TTCGTACAGAGGATAATGGACTTGGCCTTGGGTTCTAAGCTGTTCCTGTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTACAGAGGATAATGGACTTGGCCTTGGGTTCTAAGCTGTTCCTGTT  749

seq1  TGCCACCACACCGACTCTACCAGATGGGGCAAAGGTTAAAATATGACTCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACACCGACTCTACCAGATGGGGCAAAGGTTAAAATATGACTCA  799

seq1  GATCTTCATGGTATCATGAGAAAACACAGGAAACAAATACATAGCCTCAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCATGGTATCATGAGAAAACACAGGAAACAAATACATAGCCTCAG  849

seq1  AGTAACAAAGGTCTTTCAAAGTATAACAAAATCCCAGAGCTGCAAAGAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAAAGGTCTTTCAAAGTATAACAAAATCCCAGAGCTGCAAAGAAA  899

seq1  CGATAGATTGATCCAAGCACATTGAAAGATGAATTTCCACACAGGGAATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGATTGATCCAAGCACATTGAAAGATGAATTTCCACACAGGGAATA  949

seq1  AACAACGAGGAGCAAGCTAAAAACAATTATTCGATAAACTAGAAGAATGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGAGGAGCAAGCTAAAAACAATTATTCGATAAACTAGAAGAATGC  999

seq1  ACACTAGTCGAGACAGCCTTCGTAATATATAAATACAAAGAATTCTTATG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGTCGAGACAGCCTTCGTAATATATAAATACAAAGAATTCTTATG  1049

seq1  AATGTATAAGAAGAATTC  1059
      ||||||||||||||||||
seq2  AATGTATAAGAAGAATTC  1067

seq1: chr5_20740632_20741731
seq2: B6Ng01-299L05.g_71_1157

seq1  GAATTCCAGGCCAAGCCAGGGCTTCACTGCAGAACTCTAACAAAACAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAAGCCAGGGCTTCACTGCAGAACTCTAACAAAACAAAG  50

seq1  CAAACCTGCTTCAGGGATGCTCAGCCAGGAAAGCCTATTTCAGAGTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGCTTCAGGGATGCTCAGCCAGGAAAGCCTATTTCAGAGTCTGA  100

seq1  AAGAGTCTAAAATGTGAAGTGTTTGTTCTTCAGGCAATTTTGATGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCTAAAATGTGAAGTGTTTGTTCTTCAGGCAATTTTGATGAGGGA  150

seq1  TGCTCAACATGGAGCAGATTAAGTATAATGTCTTCATTGGTCGGCAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAACATGGAGCAGATTAAGTATAATGTCTTCATTGGTCGGCAACTG  200

seq1  ACATTAGCCACAGATACTGCAGGGGGGGAATACAGAGTTTTATATACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCCACAGATACTGCAGGGGGGGAATACAGAGTTTTATATACTGA  250

seq1  GAAAGAAGGGGAGGCCGTGCTAGGTGGTCCCCTTTGACATGGGCCAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGGGGAGGCCGTGCTAGGTGGTCCCCTTTGACATGGGCCAACAC  300

seq1  TGTCAGGGCCCCAGCTTTGATGAGCTTAGCCTCACATATTGTATTGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGCCCCAGCTTTGATGAGCTTAGCCTCACATATTGTATTGACTC  350

seq1  TCTTTGCTCATAGGAAAGGTCCATGGTTCACGTTTCAGCGTTGCTTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTCATAGGAAAGGTCCATGGTTCACGTTTCAGCGTTGCTTAAGT  400

seq1  AATATTGGATGCTTTCTTTAGAGATAACACAATTTGGATATCTGGGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGATGCTTTCTTTAGAGATAACACAATTTGGATATCTGGGGTCC  450

seq1  AGAGCTATGTGAGATGCCCTTTGGGGGACAGCTAGGTAAGACGGCAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATGTGAGATGCCCTTTGGGGGACAGCTAGGTAAGACGGCAGTGT  500

seq1  GTGCACATTAGCCAGAACTTCATGGTGGTGGGACCTTTGCTAGACTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATTAGCCAGAACTTCATGGTGGTGGGACCTTTGCTAGACTACTG  550

seq1  CAGCTTCTTCCCATATGTCTGATCATTTCCCACTCTTCATTGCCTGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTCCCATATGTCTGATCATTTCCCACTCTTCATTGCCTGCCAA  600

seq1  AGTGTGTTATTAAACGCGTTCTCACGCCCGGCCAGGAAGAACACAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTATTAAACGCGTTCTCACGCCCGGCCAGGAAGAACACAACAGA  650

seq1  CCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGA  700

seq1  GTGTAAGAAGCAAGAGAGCGAGAAAACGAAACCCCGTCCCTATTAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGAAGCAAGAGAGCGAGAAAACGAAACCCCGTCCCTATTAAGGAG  750

seq1  AATTATCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATC  800

seq1  GGCCGAGTTGACGTCACGGGGAA-GGCAGAGCACATGGAGTGGAGAACCA  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGCCGAGTTGACGTCACGGGGAAGGGCAGAGCACATGGAGTGGAGAACCA  850

seq1  CCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  900

seq1  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACATCTCCCCC  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCGCCATCTTGTAACGGCGAATGT-GGCGCGGCTCCCAACATCTCCCCC  949

seq1  TTTCCTTTTAATAAGAGCAAATAGGCCACCCATATTAATGAGAGTGGAGA  999
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TTTCCTTTTAATAAGAGCAAATA-GCCACCCATA-TAATGAGAGTGGAGA  997

seq1  TAGAGGTCAAATCCCCAGTGTGTAGGTAAAGGAGCCATGTACAGGATTAG  1049
      |||| ||| ||||||||||||||||   |||||||||||||||||| |||
seq2  TAGA-GTC-AATCCCCAGTGTGTAG--TAAGGAGCCATGTACAGGA-TAG  1042

seq1  CTCTTAGGCTCACAGGCTTTTACCCAGAGCAACCCTGACCTGCTCCCGTG  1099
      |||||||||||||| |||||   ||||||||  ||||||||||| |||||
seq2  CTCTTAGGCTCACA-GCTTT--ACCAGAGCA--CCTGACCTGCT-CCGTG  1086

seq1  T  1100
      |
seq2  T  1087