BAC Information

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BAC

Clone NameB6Ng01-299M04
Chromosome5 (Build37)
Map Location 10,561,413 - 10,562,348
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream geneGrm3, LOC100042768, LOC625446, LOC435832, LOC381612, EG625586, LOC242809
Downstream geneLOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299M04.bB6Ng01-299M04.g
ACCGA094512GA094513
length1,172936
definitionB6Ng01-299M04.b B6Ng01-299M04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctagaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaatcaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagatgatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatattgtaaaaatggctatcttgccaaaag
caatctacagattcaatctccatcaaaattccaactcaattcttcaacga
actagaaggagcaatttgcaaattcatctggaataacaaaaaaacctagg
atagcaaaaactcttctcaaagataaaagaacctctggtggaatcaccat
gcctgacctaaagctttactacagagcaattgtggtaaaaactgcatggt
actggtatagagacagacaagtagaccaatggaatagaattgaagaccca
gaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaa
aaccatccagtggaagaaagacagcattttcaacaaatgggtgctggcac
atctggttgttatcatgtagaagaatgcgaatcgatccatactatctctt
gtactaaggtcaatctaaatggatcaagacttcacataaaaccagagaca
ctgaaactatagagagaagtggggtaaagcttggagaaatggcacaggga
aattctgaacaggaacagccaatgctggctgtagatcgagaatgacaatg
gaacctaatgtacctccaaagg
gaattctctgtgctttgcctatccgtcttccataaaacctctggtcattt
gatgacacttaaaacagggtggctctaaataaaagttacaaaacccccaa
aaccacaaggccacaaagttacccattccctttgaattgtatcagtactc
ctaacaatatttatattgaaaggaaattgatatattgaatctcaatataa
ttctgtctatgtctatttagttgaaattcttagctatttactcaaatttt
atttggctgcacaattttaggttcaagcttttttgctgtattataaaatc
acaactacagccaatctgttctcctttatatttttctccattatgtttga
ataaagaactcttttttccatatatatatatatataatgttgggtgagct
actgggtagttgcaattctttgttggaattagaacatataatggtacttt
tgtggtcttctttctcataatttctgccatccaatactcataagctcaag
caatttcagttgactgggcaccagaccagtgacaatgtggggaaagttca
gtttctgttttctagaattttttcattcaatagtgaattcatgcatgtat
ttaatgcaaactagctagaaactattaaaaacaaagaacttacatttaaa
agccacagcagctttctgcttgactcctataacaatgtttactctcccta
acctcttgagaaattatcacacactttaattactttttcctgaaggaact
acttctctgtaactaaaaagaacatacatttacagcattatttgctatgt
aatgtaagtcagtttatgtttttttcatggtagttcaaaattcagttcag
ctatatcattactctggtcttacaaactttatctccatggcccctgctct
tctctccctctctccctctccctctccctccccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10561413_10562348
seq2: B6Ng01-299M04.g_69_1004 (reverse)

seq1  GAGGGGGAGGGAGAGGGAGAGGGAGAGAGGGAGAGAAGAGCAGGGGCCAT  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAGGGAGAGGGAGAGGGAGAGAGGGAGAGAAGAGCAGGGGCCAT  50

seq1  GGAGATAAAGTTTGTAAGACCAGAGTAATGATATAGCTGAACTGAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAAGTTTGTAAGACCAGAGTAATGATATAGCTGAACTGAATTTT  100

seq1  GAACTACCATGAAAAAAACATAAACTGACTTACATTACATAGCAAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACCATGAAAAAAACATAAACTGACTTACATTACATAGCAAATAAT  150

seq1  GCTGTAAATGTATGTTCTTTTTAGTTACAGAGAAGTAGTTCCTTCAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAATGTATGTTCTTTTTAGTTACAGAGAAGTAGTTCCTTCAGGAA  200

seq1  AAAGTAATTAAAGTGTGTGATAATTTCTCAAGAGGTTAGGGAGAGTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATTAAAGTGTGTGATAATTTCTCAAGAGGTTAGGGAGAGTAAAC  250

seq1  ATTGTTATAGGAGTCAAGCAGAAAGCTGCTGTGGCTTTTAAATGTAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATAGGAGTCAAGCAGAAAGCTGCTGTGGCTTTTAAATGTAAGTT  300

seq1  CTTTGTTTTTAATAGTTTCTAGCTAGTTTGCATTAAATACATGCATGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTAATAGTTTCTAGCTAGTTTGCATTAAATACATGCATGAAT  350

seq1  TCACTATTGAATGAAAAAATTCTAGAAAACAGAAACTGAACTTTCCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATTGAATGAAAAAATTCTAGAAAACAGAAACTGAACTTTCCCCAC  400

seq1  ATTGTCACTGGTCTGGTGCCCAGTCAACTGAAATTGCTTGAGCTTATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACTGGTCTGGTGCCCAGTCAACTGAAATTGCTTGAGCTTATGAG  450

seq1  TATTGGATGGCAGAAATTATGAGAAAGAAGACCACAAAAGTACCATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATGGCAGAAATTATGAGAAAGAAGACCACAAAAGTACCATTATA  500

seq1  TGTTCTAATTCCAACAAAGAATTGCAACTACCCAGTAGCTCACCCAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAATTCCAACAAAGAATTGCAACTACCCAGTAGCTCACCCAACAT  550

seq1  TATATATATATATATATGGAAAAAAGAGTTCTTTATTCAAACATAATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATGGAAAAAAGAGTTCTTTATTCAAACATAATGGA  600

seq1  GAAAAATATAAAGGAGAACAGATTGGCTGTAGTTGTGATTTTATAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATAAAGGAGAACAGATTGGCTGTAGTTGTGATTTTATAATACA  650

seq1  GCAAAAAAGCTTGAACCTAAAATTGTGCAGCCAAATAAAATTTGAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAAGCTTGAACCTAAAATTGTGCAGCCAAATAAAATTTGAGTAAA  700

seq1  TAGCTAAGAATTTCAACTAAATAGACATAGACAGAATTATATTGAGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGAATTTCAACTAAATAGACATAGACAGAATTATATTGAGATTC  750

seq1  AATATATCAATTTCCTTTCAATATAAATATTGTTAGGAGTACTGATACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCAATTTCCTTTCAATATAAATATTGTTAGGAGTACTGATACAA  800

seq1  TTCAAAGGGAATGGGTAACTTTGTGGCCTTGTGGTTTTGGGGGTTTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGGAATGGGTAACTTTGTGGCCTTGTGGTTTTGGGGGTTTTGTA  850

seq1  ACTTTTATTTAGAGCCACCCTGTTTTAAGTGTCATCAAATGACCAGAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTTAGAGCCACCCTGTTTTAAGTGTCATCAAATGACCAGAGGT  900

seq1  TTTATGGAAGACGGATAGGCAAAGCACAGAGAATTC  936
      ||||||||||||||||||||||||||||||||||||
seq2  TTTATGGAAGACGGATAGGCAAAGCACAGAGAATTC  936