BAC Information

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BAC

Clone NameB6Ng01-299O07
Chromosome5 (Build37)
Map Location 86,827,642 - 86,828,666
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
Downstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299O07.bB6Ng01-299O07.g
ACCGA094612GA094613
length1,0291,136
definitionB6Ng01-299O07.b B6Ng01-299O07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatccaacagaccactggaatctaacactggccagagattatcag
atattgtatcctacacagtagactacccaaaggttaacataccacgtagc
ctgaacctgttgactctatagagcctacatcttcctcaaattgtgcacac
atggaagcatatagaggtaatcccaggacatggggatataaggccagatg
atggtgagtttgagaacagcctgggatatatagcaagataatgcctcaca
agatatggatgaaaaataattttcaagagctacaaagttactagtagact
ataaaaacagttttgatgttttagaaagcttggtattttttctaacacat
aactcatcaaccattgtctttaacattcacccacatgacccccaaattat
attcatacaaaaatttgcacacagacattgacagcagtgattaattttca
aaacatagaagcagtaaagacatccttcagaaagtagataaactggcaca
tccagacaagcctttgagaacaaaagagcattgctaaataagagacactt
atgaaaagctatgtaatatttgagcttaactccatcactttatggagatg
taaattaggaagacattaaaaagttgatggttccaaggggtcaggcatag
aaggtgaatgaataaagagttggaccaaggaaattttagggaagtgaagt
atgttctgtggaaatgccgaatatatatatatataaagttcttatagaac
ccaagactaccagcccaaggatggcatcacccacagtgggcctttccacc
tttgatcactaagtgagaaaatgcctcacagcttgatctcatggaggcat
ttcctgaagggaggcttctttctctgtgataactccagcttgtgtcaagt
tgacactcaagaccagccagtacactacttcagtgaatagggtgaagagc
agtcaggaagatgccctataacaacccttgggcctctccatgtacatgcc
acatatgagccacatgcacacccacatgc
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctcagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaagatggcgccacccagaagctctgcgactctcg
cccgtcccagaaatggctggcactctgtattccacacggtcacccgtgca
gcctgccctccgcggagtcccggagccaagaaggctcccgccggcgcctg
tgccacaaacctctcaggccgggcagacccccctgctctcaccaggaagg
tggccggctgtctctctttctttcttttttatctatcactttttttttac
agtctagtcatttcccccctcccagtactcccgtccacagttcctcatca
cattcttcctcccccctgtctccaagaaaatgtccccacccacccaccaa
ccacccaccccaccccactttcaccagcctccccactcccttaggtgccg
cagaccctctgggcccctgtgcctgcgtaagaagagtctctagagtagat
gggccagattatgattgttagtgacagacagccaaacccaccatgagagt
tgttattctggatgtaattttctatgtcgagcctcgactttgtatagtta
catgagtaattgcaatcataacgaataacgccctttgaaatttttccagg
ggcctaatgaagctgaacttctaagagtaaccgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86827642_86828666
seq2: B6Ng01-299O07.b_47_1075

seq1  GAATTCATCCAACAGACCACTGGAATCTAACACTGGCCAGAGATTATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCAACAGACCACTGGAATCTAACACTGGCCAGAGATTATCAG  50

seq1  ATATTGTATCCTACACAGTAGACTACCCAAAGGTTAACATACCACGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTATCCTACACAGTAGACTACCCAAAGGTTAACATACCACGTAGC  100

seq1  CTGAACCTGTTGACTCTATAGAGCCTACATCTTCCTCAAATTGTGCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTGTTGACTCTATAGAGCCTACATCTTCCTCAAATTGTGCACAC  150

seq1  ATGGAAGCATATAGAGGTAATCCCAGGACATGGGGATATAAGGCCAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCATATAGAGGTAATCCCAGGACATGGGGATATAAGGCCAGATG  200

seq1  ATGGTGAGTTTGAGAACAGCCTGGGATATATAGCAAGATAATGCCTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAGTTTGAGAACAGCCTGGGATATATAGCAAGATAATGCCTCACA  250

seq1  AGATATGGATGAAAAATAATTTTCAAGAGCTACAAAGTTACTAGTAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGATGAAAAATAATTTTCAAGAGCTACAAAGTTACTAGTAGACT  300

seq1  ATAAAAACAGTTTTGATGTTTTAGAAAGCTTGGTATTTTTTCTAACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACAGTTTTGATGTTTTAGAAAGCTTGGTATTTTTTCTAACACAT  350

seq1  AACTCATCAACCATTGTCTTTAACATTCACCCACATGACCCCCAAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCAACCATTGTCTTTAACATTCACCCACATGACCCCCAAATTAT  400

seq1  ATTCATACAAAAATTTGCACACAGACATTGACAGCAGTGATTAATTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACAAAAATTTGCACACAGACATTGACAGCAGTGATTAATTTTCA  450

seq1  AAACATAGAAGCAGTAAAGACATCCTTCAGAAAGTAGATAAACTGGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGAAGCAGTAAAGACATCCTTCAGAAAGTAGATAAACTGGCACA  500

seq1  TCCAGACAAGCCTTTGAGAACAAAAGAGCATTGCTAAATAAGAGACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACAAGCCTTTGAGAACAAAAGAGCATTGCTAAATAAGAGACACTT  550

seq1  ATGAAAAGCTATGTAATATTTGAGCTTAACTCCATCACTTTATGGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGCTATGTAATATTTGAGCTTAACTCCATCACTTTATGGAGATG  600

seq1  TAAATTAGGAAGACATTAAAAAGTTGATGGTTCCAAGGGGTCAGGCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGGAAGACATTAAAAAGTTGATGGTTCCAAGGGGTCAGGCATAG  650

seq1  AAGGTGAATGAATAAAGAGTTGGACCAAGGAAATTTTAGGGAAGTGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAATGAATAAAGAGTTGGACCAAGGAAATTTTAGGGAAGTGAAGT  700

seq1  ATGTTCTGTGGAAATGCCGAATATATATATATATAAAGTTCTTATAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGTGGAAATGCCGAATATATATATATATAAAGTTCTTATAGAAC  750

seq1  CCAAGACTACCAGCCCAAGGATGGCATCACCCACAGTGGGCCTTTCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTACCAGCCCAAGGATGGCATCACCCACAGTGGGCCTTTCCACC  800

seq1  TTTGATCACTAAGTGAGAAAATGCCTCACAGCTTGATCTCATGGAGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCACTAAGTGAGAAAATGCCTCACAGCTTGATCTCATGGAGGCAT  850

seq1  TTCCTGAAGGGAGGCTTCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGGGAGGCTTCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGT  900

seq1  TGACACTCAAGACCAGCCAGTACACTACTTCAGTGAATAGGGTGAAGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCAAGACCAGCCAGTACACTACTTCAGTGAATAGGGTGAAGAGC  950

seq1  AGTCAAGGAAGATGCCCTATAACAA-CCTTGGGCCTCTCCATGTACATG-  998
      |||| |||||||||||||||||||| ||||||||||||||||||||||| 
seq2  AGTC-AGGAAGATGCCCTATAACAACCCTTGGGCCTCTCCATGTACATGC  999

seq1  CACATATGAG-CACATGCACA--CACATGC  1025
      |||||||||| ||||||||||  |||||||
seq2  CACATATGAGCCACATGCACACCCACATGC  1029