BAC Information

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BAC

Clone NameB6Ng01-299P11
Chromosome5 (Build37)
Map Location 49,994,650 - 49,995,816
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnip4, LOC100041668, LOC100041659, EG433885
Downstream geneLOC666223, Gpr125, EG637307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299P11.bB6Ng01-299P11.g
ACCGA094664GA094665
length1,1471,196
definitionB6Ng01-299P11.b B6Ng01-299P11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcctatgctttctctcttagatttggatgaaacttggtccctg
aagctacatgaaccaccataagaaagaagagcaaaacagacaagggactg
aagccagcttgcactccacagctgcacaaagaagtgattgctattttatg
tcattaaattttagggtgatttatgtttagcaagaggaaataataaaacc
agttaaagttttgaaattgattaaggcttaataatgtaacagttgtatta
tgcactagaaggttagagctgacttcctgcttaaggaggcttttcacaaa
tcgctagcaaaactgttcaacagtgtagatcttgaatccttttaacctct
agcaggaactgatttctactagtattcacctctaaaataaaaataaagaa
aaaaactttaaaagtgacctcatactagctttatagaacagaagttgata
taccacatcatcattgcaaagaaaactttgccctaaaatcagaatttaaa
acatcaggctaaaagcaaatgagtcatatttatttcctttctctaagttt
ccttctgaatgagtccaacttcaatagtaacaggaaataaagctttgatt
ttaacacattataagcataatagaaatttcattaaaatctctggagataa
ctcgatgtctattaacaacctgctttttgttttcctctgaggttgggccc
ttttgcagggctagactagctactgcaaagtcaaactcgaatgaacagat
gagactaaaataattcatattagttgtcccagttaaaatgttgcccaaaa
aaaagactcctggtgtctttctactgtagctctgaaggtggggagtgaac
ttgattttcctctatagattgacactgcaagggggttttaaaaggcatca
gtataaggaaaagttcttctttctcagtttgacaaagtctcggtagtccc
tactgctaattcagctttcttctttttttttgttttttttttttaatatt
tttttatatgtattactcatacattccaatgctatccaaaagtcacccat
acctctaccctcccccctactccctaccaccattcctcttttgaccctgg
cggttccctgttactgagcatagtgcctgttcaatgggcctctcttt
gaattctcctctgaggaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagcccccgccctgcgtagtgcgtcagca
atgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
actcgccgagtcggtccgtaaatatggaaccaatgctaattttaccttgg
tgcagttagacaggcttgccggcatggcactaactcctgctgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agctctttggcatgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcaaacaaactaccattggggagcttatgccca
agtttcctccacggctattagggcctggaaggcgctctctcgagcaggtg
aaaccactgggcagttaacaaagataatccagggacctcaggaatccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
gtcagagcaagctgcgcctctgatagaacagctaatctatgagcaagcca
caaaggagtgccgagcggccatagccccaagaaagaacaaaggcttacaa
gactggctcagggtctgtcgagagcttgggggacctctcaccaatgcagg
cttagcggccgccatcctccaatctcagaaccgctccatgagcagaaatg
atcagaggacatgtttttaattgcggaaagcctgggcattttagaaagat
tgcagagcttcagaataaacaaggagggactcctccacctctttgcctcc
ttaaggtgtggcaaggtttatcataaggcctgaccagtgtcgcctctgtg
tgaagggatattaaaagggcccagaaaatttctttccctccacaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49994650_49995816
seq2: B6Ng01-299P11.b_47_1193

seq1  GAATTCATCCTATGCTTTCTCTCTTAGATTTGGATGAAACTTGGTCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTATGCTTTCTCTCTTAGATTTGGATGAAACTTGGTCCCTG  50

seq1  AAGCTACATGAACCACCATAAGAAAGAAGAGCAAAACAGACAAGGGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACATGAACCACCATAAGAAAGAAGAGCAAAACAGACAAGGGACTG  100

seq1  AAGCCAGCTTGCACTCCACAGCTGCACAAAGAAGTGATTGCTATTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCTTGCACTCCACAGCTGCACAAAGAAGTGATTGCTATTTTATG  150

seq1  TCATTAAATTTTAGGGTGATTTATGTTTAGCAAGAGGAAATAATAAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAATTTTAGGGTGATTTATGTTTAGCAAGAGGAAATAATAAAACC  200

seq1  AGTTAAAGTTTTGAAATTGATTAAGGCTTAATAATGTAACAGTTGTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGTTTTGAAATTGATTAAGGCTTAATAATGTAACAGTTGTATTA  250

seq1  TGCACTAGAAGGTTAGAGCTGACTTCCTGCTTAAGGAGGCTTTTCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAGAAGGTTAGAGCTGACTTCCTGCTTAAGGAGGCTTTTCACAAA  300

seq1  TCGCTAGCAAAACTGTTCAACAGTGTAGATCTTGAATCCTTTTAACCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAGCAAAACTGTTCAACAGTGTAGATCTTGAATCCTTTTAACCTCT  350

seq1  AGCAGGAACTGATTTCTACTAGTATTCACCTCTAAAATAAAAATAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAACTGATTTCTACTAGTATTCACCTCTAAAATAAAAATAAAGAA  400

seq1  AAAAACTTTAAAAGTGACCTCATACTAGCTTTATAGAACAGAAGTTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTAAAAGTGACCTCATACTAGCTTTATAGAACAGAAGTTGATA  450

seq1  TACCACATCATCATTGCAAAGAAAACTTTGCCCTAAAATCAGAATTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATCATCATTGCAAAGAAAACTTTGCCCTAAAATCAGAATTTAAA  500

seq1  ACATCAGGCTAAAAGCAAATGAGTCATATTTATTTCCTTTCTCTAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGCTAAAAGCAAATGAGTCATATTTATTTCCTTTCTCTAAGTTT  550

seq1  CCTTCTGAATGAGTCCAACTTCAATAGTAACAGGAAATAAAGCTTTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAATGAGTCCAACTTCAATAGTAACAGGAAATAAAGCTTTGATT  600

seq1  TTAACACATTATAAGCATAATAGAAATTTCATTAAAATCTCTGGAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACATTATAAGCATAATAGAAATTTCATTAAAATCTCTGGAGATAA  650

seq1  CTCGATGTCTATTAACAACCTGCTTTTTGTTTTCCTCTGAGGTTGGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATGTCTATTAACAACCTGCTTTTTGTTTTCCTCTGAGGTTGGGCCC  700

seq1  TTTTGCAGGGCTAGACTAGCTACTGCAAAGTCAAACTCGAATGAACAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGGGCTAGACTAGCTACTGCAAAGTCAAACTCGAATGAACAGAT  750

seq1  GAGACTAAAATAATTCATATTAGTTGTCCCAGTTAAAATGTTGCCCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAAAATAATTCATATTAGTTGTCCCAGTTAAAATGTTGCCCAAAA  800

seq1  AAAAGACTCCTGGTGTCTTTCTACTGTAGCTCTGAAGGTGGGGAGTGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTCCTGGTGTCTTTCTACTGTAGCTCTGAAGGTGGGGAGTGAAC  850

seq1  TTGATTTTCCTCTATAGATTGACACTGC-AGGGGGTTTTAAAAGGCATCA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGATTTTCCTCTATAGATTGACACTGCAAGGGGGTTTTAAAAGGCATCA  900

seq1  GGTATAAGGAAAAGTTCTTCTTTCTCAGTTTGACAAAGTCTCGGTAGTCC  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTATAAGGAAAAGTTCTTCTTTCTCAGTTTGACAAAGTCTCGGTAGTCC  949

seq1  CTACTGCTAATTCAGCTTTCTTTCTTTTTTTTTG-TTTTTTTTTTTAATA  998
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  CTACTGCTAATTCAGCTTTC-TTCTTTTTTTTTGTTTTTTTTTTTTAATA  998

seq1  TTTTTTTATTATGTATTTTACTCAATTACATTTCCAATGCTATCCCAAAA  1048
      |||||||| ||||||  |||||||  |||| |||||||||||| ||||||
seq2  TTTTTTTA-TATGTA--TTACTCA--TACA-TTCCAATGCTAT-CCAAAA  1041

seq1  GTCACCCATACCCTCCTACCCTCCCCCCTACTCCCCTACCCACCCATTCC  1098
      ||||||||||||   ||||||||||||||||| |||||||   ||||| |
seq2  GTCACCCATACC--TCTACCCTCCCCCCTACT-CCCTACC--ACCATT-C  1085

seq1  CTCTTTTTGGCCCTGGCGTTCCCCTG-TACTGAGGCATATAAAGTTTGCG  1147
      ||| ||||| |||||||| | ||||| |||||| |||||       ||| 
seq2  CTC-TTTTGACCCTGGCGGTTCCCTGTTACTGA-GCATA------GTGCC  1127

seq1  TGTCCAATGGGCCTCTCTTT  1167
      ||| ||||||||||||||||
seq2  TGTTCAATGGGCCTCTCTTT  1147