BAC Information

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BAC

Clone NameB6Ng01-299P17
Chromosome5 (Build37)
Map Location 73,152,002 - 73,313,282
singlet/doubletdoublet
Overlap geneTec
Upstream geneGabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk
Downstream geneSlain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299P17.bB6Ng01-299P17.g
ACCGA094676GA094677
length1,1871,124
definitionB6Ng01-299P17.b B6Ng01-299P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,312,110 - 73,313,282)(73,152,002 - 73,153,135)
sequence
gaattccaggacagccagggctatacagagaagccctgtctcaaaaaacc
aaataaaggaaaaaaaaaaaaaaaaaaaaaagaaattgctgtctatggta
gtgcacacttttaatctcagtattctagaggcagaggcagggctatctct
gtgagtttgaagccagcctattctatataagagattttcaggtcagatag
taggtccatttaaggaaagggaaaagggaaaaaaaggaaaaaagggggtg
tggaagagggaggaaagagaaggaaaggaaagggaagaaattttagaaat
aaagtcagtcaggtgtgtggcatatgcctttaatcccagcactcacgagg
cagacagaggtggatccctgtgagtttgaggccagtctggtaaacaaagt
gagttccaggatagccagggttatgcagagagaccttgtctcaaaaacaa
atcaaaactgtaaaagtaaaaagtaaaaatcataatttaaagagttaaaa
gtaagcttacagtgatgacacatgcccacaatccgagtcctcatgtggcg
agcagtgaaacaggagtgcatgtaattaaatgtcaccacagcattactaa
taacagccaatggtggcaacaacgcaaatgcccacgtacaaaggaatgga
tacataaattccagaacaatgatgccagtgacaagcaactaaggcagaac
agataaactgctcgtcactattaagacgttgtgcatcaaagattcttcca
agaaaatgagatcacatggtatgggggcaagaacatgcgcaagccatgca
cacccagaatctactcttagagcctacagcataaagacaatgcagtcaga
aaaaggtcaagtggagccagcgactagcttccatggtagagtgcttacct
tagcatacccaaagctactagggccaatccctaggtgcagaaaaaatgaa
atgtataaaggttccattagacattttttcgaaaagaattaaccacaaat
gggccaagaaaatacaaggaattgctcagtattcatagcccagtagagaa
attgccagatcatgggtctgtgagaattgcttcagttggataggacaccc
gacctgtcctcgaagttcagaagtcaattccagcaccactgatggcttca
agcaccgtatgagatcttggagtgccctcctcttctg
gaattctctctaggtaacagtagaaacacacaatcatcacagtgaccagt
aacctgagagtggtcacctcaacagacagaagaatggccaagtatagaca
caggacctgctttatcgtgtatgaggttgctaatatattaagacataata
tactcagctggtaaaacacacacatatgttatttggggtttggtgtattc
ttgaatccatcaagaattacatgaaccaatataataatttggtagaatga
cagagggcttctcagaagcaaaataatggtgtttttaacacctcaactga
tggggcaaggtttctccctcactcgtcggatgcttgtttttcctgtgtga
taattccccagagctcctttcctctgagcacatttaagagtctctctcaa
gtgacagttaatgcccacctcttgaattatctgcaccttcccgggaggac
agccatggtactgtcacttgcaagcccatgaaacactttactcaggggaa
aggcacattcgacacttccttttgtgagggcaaaagttacgttttacgtc
ttaaactgctgtgcctaaaagatctgtaaaataaacttttctttaatctg
taagtttcacttgtttccaggacagaaacttcctggaatgctgaagactg
tggcccgcctacgaccacaagccatgtgttctcacttctgtaaacaaggg
tggttaccccaggtgcacaggatgtgcttggtcacatgtaagcagaaggt
gtgtaactgtagctgggaagtacactaggatatatgcttgtccctgatca
gacaaagtcaaaagtctatagcctaataggtttgccttaataagcactgg
gcttatgtaattagcaggcattctctgggaatccccgggaatgaacttgg
ctagtatttaccatgttggtcagaatttaataaagcttgcttcaaatttg
gctcaaagttgtgtagtatctattctcgctggcaggattattacttaagg
gtgtaaaacttccaggaatttatatcatatcactgggcaaaaaaaatcca
actcactttccagaaaaattaattctgttaacgaccagtgcaggtcaatg
gaaggatcgtctgcatccattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_73312110_73313282
seq2: B6Ng01-299P17.b_51_1237 (reverse)

seq1  CAGAA---GAGGGCA-TC--AGATCTCATTACGGGTGGTTGTGAGCCATC  44
      |||||   ||||||| ||  |||||||| ||| |||| |||  |||||||
seq2  CAGAAGAGGAGGGCACTCCAAGATCTCA-TAC-GGTGCTTG-AAGCCATC  47

seq1  ATGTGGTTGCTGGGATTTGAACTTCTGACCTTCGGAAGAACA-GTCGGGT  93
      | |||| |||||| |||   |||||||| |||||  || ||| |||||||
seq2  A-GTGG-TGCTGGAATT--GACTTCTGAACTTCG--AGGACAGGTCGGGT  91

seq1  GCTCTTACCCACTGAGCCA--TCTCACCGGCCCCCTGATCTG--CATTTC  139
      |  ||  || |||||  ||  ||||| | | ||| |||||||   |||||
seq2  GTCCTATCCAACTGAAGCAATTCTCA-CAGACCCATGATCTGGCAATTTC  140

seq1  TCTACT-GGCTAATGATACTGAGCAATTCC-TGTA-TTTCTTGG-CCATT  185
      |||||| |||||   ||||||||||||||| |||| |||||||| |||||
seq2  TCTACTGGGCTATGAATACTGAGCAATTCCTTGTATTTTCTTGGCCCATT  190

seq1  TGT-GTTAATTCTTTTCG-AAAAATGTCTATTGGAACCCTTTATACATTT  233
      ||| |||||||||||||| ||||||||||| ||||| |||||||||||||
seq2  TGTGGTTAATTCTTTTCGAAAAAATGTCTAATGGAA-CCTTTATACATTT  239

seq1  C--TTTTTCTGCA-CTAGGGATTGG-CCTAGTAGC-TTGGGTATGCT-AG  277
      |  |||||||||| ||||||||||| ||||||||| ||||||||||| ||
seq2  CATTTTTTCTGCACCTAGGGATTGGCCCTAGTAGCTTTGGGTATGCTAAG  289

seq1  GTAAGCACTCTACCATGG-AGCTAGTCGCTGGCTCCACTTGACCTTTTTC  326
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTAAGCACTCTACCATGGAAGCTAGTCGCTGGCTCCACTTGACCTTTTTC  339

seq1  TGACTGCATTGTCTTTATGCTGTAGGCTCTAAGAGTAGATTCTGGGTGTG  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCATTGTCTTTATGCTGTAGGCTCTAAGAGTAGATTCTGGGTGTG  389

seq1  CATGGCTTGCGCATGTTCTTG-CCCCATACCATGTGATCTCATTTTCTTG  425
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATGGCTTGCGCATGTTCTTGCCCCCATACCATGTGATCTCATTTTCTTG  439

seq1  GAAGAATCTTTGATGCACAACGTCTTAATAGTGACGAGCAGTTTATCTGT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCTTTGATGCACAACGTCTTAATAGTGACGAGCAGTTTATCTGT  489

seq1  TCTGCCTTAGTTGCTTGTCACTGGCATCATTGTTCTGGAATTTATGTATC  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTAGTTGCTTGTCACTGGCATCATTGTTCTGGAATTTATGTATC  539

seq1  CATTCCTTTGTACGTGGGCATTTGCGTTGTTGCCACCATTGGCTGTTATT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTGTACGTGGGCATTTGCGTTGTTGCCACCATTGGCTGTTATT  589

seq1  AGTAATGCTGTGGTGACATTTAATTACATGCACTCCTGTTTCACTGCTCG  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCTGTGGTGACATTTAATTACATGCACTCCTGTTTCACTGCTCG  639

seq1  CCACATGAGGACTCGGATTGTGGGCATGTGTCATCACTGTAAGCTTACTT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAGGACTCGGATTGTGGGCATGTGTCATCACTGTAAGCTTACTT  689

seq1  TTAACTCTTTAAATTATGATTTTTACTTTTTACTTTTACAGTTTTGATTT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTTAAATTATGATTTTTACTTTTTACTTTTACAGTTTTGATTT  739

seq1  GTTTTTGAGACAAGGTCTCTCTGCATAACCCTGGCTATCCTGGAACTCAC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGACAAGGTCTCTCTGCATAACCCTGGCTATCCTGGAACTCAC  789

seq1  TTTGTTTACCAGACTGGCCTCAAACTCACAGGGATCCACCTCTGTCTGCC  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTACCAGACTGGCCTCAAACTCACAGGGATCCACCTCTGTCTGCC  839

seq1  TCGTGAGTGCTGGGATTAAAGGCATATGCCACACACCTGACTGACTTTAT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAGTGCTGGGATTAAAGGCATATGCCACACACCTGACTGACTTTAT  889

seq1  TTCTAAAATTTCTTCCCTTTCCTTTCCTTCTCTTTCCTCCCTCTTCCACA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATTTCTTCCCTTTCCTTTCCTTCTCTTTCCTCCCTCTTCCACA  939

seq1  CCCCCTTTTTTCCTTTTTTTCCCTTTTCCCTTTCCTTAAATGGACCTACT  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTTTTCCTTTTTTTCCCTTTTCCCTTTCCTTAAATGGACCTACT  989

seq1  ATCTGACCTGAAAATCTCTTATATAGAATAGGCTGGCTTCAAACTCACAG  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCTGAAAATCTCTTATATAGAATAGGCTGGCTTCAAACTCACAG  1039

seq1  AGATAGCCCTGCCTCTGCCTCTAGAATACTGAGATTAAAAGTGTGCACTA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCCTGCCTCTGCCTCTAGAATACTGAGATTAAAAGTGTGCACTA  1089

seq1  CCATAGACAGCAATTTCTTTTTTTTTTTTTTTTTTTTTTCCTTTATTTGG  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGACAGCAATTTCTTTTTTTTTTTTTTTTTTTTTTCCTTTATTTGG  1139

seq1  TTTTTTGAGACAGGGCTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  1173
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGCTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  1187

seq1: chr5_73152002_73153135
seq2: B6Ng01-299P17.g_68_1191

seq1  GAATTCTCTCTAGGTAACAGTAGAAACACACAATCATCACAGTGACCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTAGGTAACAGTAGAAACACACAATCATCACAGTGACCAGT  50

seq1  AACCTGAGAGTGGTCACCTCAACAGACAGAAGAATGGCCAAGTATAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGAGTGGTCACCTCAACAGACAGAAGAATGGCCAAGTATAGACA  100

seq1  CAGGACCTGCTTTATCGTGTATGAGGTTGCTAATATATTAAGACATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTGCTTTATCGTGTATGAGGTTGCTAATATATTAAGACATAATA  150

seq1  TACTCAGCTGGTAAAACACACACATATGTTATTTGGGGTTTGGTGTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCTGGTAAAACACACACATATGTTATTTGGGGTTTGGTGTATTC  200

seq1  TTGAATCCATCAAGAATTACATGAACCAATATAATAATTTGGTAGAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCCATCAAGAATTACATGAACCAATATAATAATTTGGTAGAATGA  250

seq1  CAGAGGGCTTCTCAGAAGCAAAATAATGGTGTTTTTAACACCTCAACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGCTTCTCAGAAGCAAAATAATGGTGTTTTTAACACCTCAACTGA  300

seq1  TGGGGCAAGGTTTCTCCCTCACTCGTCGGATGCTTGTTTTTCCTGTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAGGTTTCTCCCTCACTCGTCGGATGCTTGTTTTTCCTGTGTGA  350

seq1  TAATTCCCCAGAGCTCCTTTCCTCTGAGCACATTTAAGAGTCTCTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCCAGAGCTCCTTTCCTCTGAGCACATTTAAGAGTCTCTCTCAA  400

seq1  GTGACAGTTAATGCCCACCTCTTGAATTATCTGCACCTTCCCGGGAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTTAATGCCCACCTCTTGAATTATCTGCACCTTCCCGGGAGGAC  450

seq1  AGCCATGGTACTGTCACTTGCAAGCCCATGAAACACTTTACTCAGGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGGTACTGTCACTTGCAAGCCCATGAAACACTTTACTCAGGGGAA  500

seq1  AGGCACATTCGACACTTCCTTTTGTGAGGGCAAAAGTTACGTTTTACGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATTCGACACTTCCTTTTGTGAGGGCAAAAGTTACGTTTTACGTC  550

seq1  TTAAACTGCTGTGCCTAAAAGATCTGTAAAATAAACTTTTCTTTAATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGCTGTGCCTAAAAGATCTGTAAAATAAACTTTTCTTTAATCTG  600

seq1  TAAGTTTCACTTGTTTCCAGGACAGAAACTTCCTGGAATGCTGAAGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCACTTGTTTCCAGGACAGAAACTTCCTGGAATGCTGAAGACTG  650

seq1  TGGCCCGCCTACGACCACAAGCCATGTGTTCTCACTTCTGTAAACAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCGCCTACGACCACAAGCCATGTGTTCTCACTTCTGTAAACAAGGG  700

seq1  TGGTTACCCCAGGTGCACAGGATGTGCTTGGTCACATGTAAGCAGAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACCCCAGGTGCACAGGATGTGCTTGGTCACATGTAAGCAGAAGGT  750

seq1  GTGTAACTGTAGCTGGGAAGTACACTAGGATATATGCTTGTCCCTGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACTGTAGCTGGGAAGTACACTAGGATATATGCTTGTCCCTGATCA  800

seq1  GACAAAGTCAAAAGTCTATAGCCTAATAGGTTTGCCTTAATAAGCACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTCAAAAGTCTATAGCCTAATAGGTTTGCCTTAATAAGCACTGG  850

seq1  GCTTATGTAATTAGCAGGCATTCTCTGGGAAT-CCCGGGAATGAACTTGG  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTTATGTAATTAGCAGGCATTCTCTGGGAATCCCCGGGAATGAACTTGG  900

seq1  CTAGTATTTACCATGTTGGTCAGAATTTAATAAAGCTTGCTTCAAATTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTTACCATGTTGGTCAGAATTTAATAAAGCTTGCTTCAAATTTG  950

seq1  GCTCAAAGGTTGTGTTAGTAATCTTATTCTCGCCTGGCAGGATTAATACT  999
      ||||||| |||||| |||| ||| |||||||| |||||||||||| ||||
seq2  GCTCAAA-GTTGTG-TAGT-ATC-TATTCTCG-CTGGCAGGATTATTACT  995

seq1  TTAAAGGGTGTTAAAACCTTCCAGGGATTTATATCAATATCACTGGCCAA  1049
      |  ||||||||  ||| |||||||| ||||||||| |||||||||| |||
seq2  T--AAGGGTGT--AAAACTTCCAGGAATTTATATC-ATATCACTGGGCAA  1040

seq1  AAAAAATTCAAAACTCACTTTCAAG-AAAATAAATTCTG-TACAGACAAG  1097
      ||||||| |  ||||||||||| || ||||| ||||||| ||  ||| ||
seq2  AAAAAATCC--AACTCACTTTCCAGAAAAATTAATTCTGTTAACGACCAG  1088

seq1  TGCAAGTC-ATGAAAGTATTCCGTCTGCATCCATTCTC  1134
      |||| ||| ||| ||| ||  |||||||||||||||||
seq2  TGCAGGTCAATGGAAGGAT--CGTCTGCATCCATTCTC  1124