BAC Information

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BAC

Clone NameB6Ng01-300A24
Chromosome5 (Build37)
Map Location 113,698,885 - 113,785,436
singlet/doubletdoublet
Overlap geneRutbc2
Upstream geneTpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854
Downstream geneAym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300A24.bB6Ng01-300A24.g
ACCGA094734GA094735
length7921,047
definitionB6Ng01-300A24.b B6Ng01-300A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,698,885 - 113,699,674)(113,784,392 - 113,785,436)
sequence
gaattcaaagtgagcattttcagaagcttcttctgacacccagtgttcgg
cacagcagggtagcttagggctttctctagttcgggcttagctttgttgc
ttcaagaaaatccaccgggcgaagccgcagctacagtatagccttccttg
ggttgccatgggaactctgaccacttaggtagataatgtcagagtcttta
gaaatcagaaaacctggctgtggcacaaatgcaaagtcctcatcagaaag
acttcctttcttcaaggggttggggggagggcgctctctggagtcacttg
gatgtccactgtttcccttggtttttattttatgtgcacgagtgttctgc
accatgtgcctgcagtgcccacagaggccagaagagggagccgaggcccc
tggagctggagttacagcaggctgtgagccagcattgaacccaggtcctc
tgatagagcagccagtgcttttaaccactgagccatctctctagcctcct
tggctttaatttatgagttataaaatgactcctctgaagtttctaattcc
ttttttagtgtgagtctctaggggtttgtgagttctgttgtcagtttgct
ggtacatacatttctatggcgttcacatgtccaatccattccttttgcct
gtggagtctgtagtggtgtcccctcattggcttctgactggtcacctgtg
taccctctacacaccttgtgcttctaataaggggttttccagctttgctg
gccttccctaagagccagctttgagttcttaatctccattct
gaattcagaagggtccagagggatggctgagcatgcagacaccgctgcta
atggagaaggagcaggagttccagttcaacagggacacgggacacgactc
ggcagtcatgtgctcacatctatcacgtctgctaatgagctttcctgccc
agggctggggctccataatagagctctgaagacagctccaaccagagttc
cagacctcggctgtgagccctggcccccactgtaccaccatccagagtaa
aaaactcgacccaaggtttcccgccacatcagagaagggaggtgcctcga
ctctcttccccagtgccctttaggaagagaggcaggacaccctgttgttg
gtttctctggtgtcggacaccagcagacaccgtcgtatgcatcacacatg
ggggaaaagtctggggaggagaatgggagattcctatgcgcacacatgga
tgaagagattctgtcccactgtacctcctgagactgggtctgagagtcac
caccctagacccagacatgccaggacccactgccccatgctctcccctct
ccctgcccaggctcttgggctccctctccaatgccatcataagcatagca
gaggagcttggagggagagggacgccccattctggggccttgtaaagctg
ctgcatcccatgtctggaagcaagcatggctgccctgccctctcgttccc
ccacacccccttccagcccatctgcatactcatgctcccaccctaactct
ctcagctcaaactgcacctagtaaggcctgcatcataggacccacaccag
cctcacctccctagtgcgagcggttcctcccccctcgagtaaagaactcg
cctctctctgctgggaaagacaaagacacttgggcatctcaggggacctc
agccacagtgcttgtcccagtctccctccccatgtggcagtggccacctg
gaccccctttctgtggactgcattccccctccacctccgcgcagaagtct
caacttacaccatattgagttgcacacgcctgctgccatcctctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_113698885_113699674
seq2: B6Ng01-300A24.b_44_835

seq1  GAATTCAAAGTGAGCATTTTCAGAAGCTTCTTCTGACACCCAGTGTTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTGAGCATTTTCAGAAGCTTCTTCTGACACCCAGTGTTCGG  50

seq1  CACAGCAGGGTAGCTTAGGGCTTTCTCTAGTTCGGGCTTAGCTTTGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGGGTAGCTTAGGGCTTTCTCTAGTTCGGGCTTAGCTTTGTTGC  100

seq1  TTCAAGAAAATCCACCGGGCGAAGCCGCAGCTACAGTATAGCCTTCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAAATCCACCGGGCGAAGCCGCAGCTACAGTATAGCCTTCCTTG  150

seq1  GGTTGCCATGGGAACTCTGACCACTTAGGTAGATAATGTCAGAGTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCATGGGAACTCTGACCACTTAGGTAGATAATGTCAGAGTCTTTA  200

seq1  GAAATCAGAAAACCTGGCTGTGGCACAAATGCAAAGTCCTCATCAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGAAAACCTGGCTGTGGCACAAATGCAAAGTCCTCATCAGAAAG  250

seq1  ACTTCCTTTCTTCAAGGGGTTGGGGGGAGGGCGCTCTCTGGAGTCACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTTCTTCAAGGGGTTGGGGGGAGGGCGCTCTCTGGAGTCACTTG  300

seq1  GATGTCCACTGTTTCCCTTGGTTTTTATTTTATGTGCACGAGTGTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCACTGTTTCCCTTGGTTTTTATTTTATGTGCACGAGTGTTCTGC  350

seq1  ACCATGTGCCTGCAGTGCCCACAGAGGCCAGAAGAGGGAGCCGAGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGCCTGCAGTGCCCACAGAGGCCAGAAGAGGGAGCCGAGGCCCC  400

seq1  TGGAGCTGGAGTTACAGCAGGCTGTGAGCCAGCATTGAACCCAGGTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGGAGTTACAGCAGGCTGTGAGCCAGCATTGAACCCAGGTCCTC  450

seq1  TGATAGAGCAGCCAGTGCTTTTAACCACTGAGCCATCTCTCTAGCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAGCAGCCAGTGCTTTTAACCACTGAGCCATCTCTCTAGCCTCCT  500

seq1  TGGCTTTAATTTATGAGTTATAAAATGACTCCTCTGAAGTTTCTAATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAATTTATGAGTTATAAAATGACTCCTCTGAAGTTTCTAATTCC  550

seq1  TTTTTTAGTGTGAGTCTCTAGGGGTTTGTGAGTTCTGTTGTCAGTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGTGTGAGTCTCTAGGGGTTTGTGAGTTCTGTTGTCAGTTTGCT  600

seq1  GGTACATACATTTCTATGGCGTTCACATGTCCAATCCATTCC-TTTGCCT  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTACATACATTTCTATGGCGTTCACATGTCCAATCCATTCCTTTTGCCT  650

seq1  GTGGAGTCTGTAGTGGTGTCCCCTCATTGGCTTCTGACTGGTCACCTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTCTGTAGTGGTGTCCCCTCATTGGCTTCTGACTGGTCACCTGTG  700

seq1  TACCCTCTACACACC-TGTGCTTCTAATAAGGGGTTTCCCAGCTTTGCTG  748
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TACCCTCTACACACCTTGTGCTTCTAATAAGGGGTTTTCCAGCTTTGCTG  750

seq1  GCCTTCCCTAAGAGCCAGCTTTGAGTTTCTTATCTCCATTCT  790
      |||||||||||||||||||||||||||  | |||||||||||
seq2  GCCTTCCCTAAGAGCCAGCTTTGAGTTCTTAATCTCCATTCT  792

seq1: chr5_113784392_113785436
seq2: B6Ng01-300A24.g_66_1112 (reverse)

seq1  GGCAG-GGATGGCAGCAGG-GTGTGGCAACTCACTATGGTGTAAGTTTGA  48
      ||||| ||||||||||||| |||| |||||||| ||||||||||| ||||
seq2  GGCAGAGGATGGCAGCAGGCGTGT-GCAACTCAATATGGTGTAAG-TTGA  48

seq1  GAACTCTGGGCGGGGGGGGGGGGGGGGGATGCAGTCCACAG-AAGGGGGT  97
      ||  |||  ||| || || || ||||| ||||||||||||| ||||||||
seq2  GACTTCT--GCGCGGAGGTGGAGGGGGAATGCAGTCCACAGAAAGGGGGT  96

seq1  -CAGGT-GCCACTGCCACAT-GGGAGGGAGACTGGGACAAGCACTGTGGC  144
       ||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGGTGGCCACTGCCACATGGGGAGGGAGACTGGGACAAGCACTGTGGC  146

seq1  TGAGGTCCCCTGAGATG-CCAAGTGTCTTTGTCTTTCCCAGCAGAGAGAG  193
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCCTGAGATGCCCAAGTGTCTTTGTCTTTCCCAGCAGAGAGAG  196

seq1  GCGAGTTCTTTTACTCGAGGGGGGAGGAACCGCTCGCACTAGGGAGGTGA  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTTC-TTTACTCGAGGGGGGAGGAACCGCTCGCACTAGGGAGGTGA  245

seq1  GGCTGGTGTGGGTCCTATGATGCAGGCCTTACTAGGTGCAGTTTGAGCTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGTGGGTCCTATGATGCAGGCCTTACTAGGTGCAGTTTGAGCTG  295

seq1  AGAGAGTTAGGGTGGGAGCATGAGTATGCAGATGGGCTGGAAGGGGGTGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTAGGGTGGGAGCATGAGTATGCAGATGGGCTGGAAGGGGGTGT  345

seq1  GGGGGAACGAGAGGGCAGGGCAGCCATGCTTGCTTCCAGACATGGGATGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAACGAGAGGGCAGGGCAGCCATGCTTGCTTCCAGACATGGGATGC  395

seq1  AGCAGCTTTACAAGGCCCCAGAATGGGGCGTCCCTCTCCCTCCAAGCTCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTTACAAGGCCCCAGAATGGGGCGTCCCTCTCCCTCCAAGCTCC  445

seq1  TCTGCTATGCTTATGATGGCATTGGAGAGGGAGCCCAAGAGCCTGGGCAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATGCTTATGATGGCATTGGAGAGGGAGCCCAAGAGCCTGGGCAG  495

seq1  GGAGAGGGGAGAGCATGGGGCAGTGGGTCCTGGCATGTCTGGGTCTAGGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGGAGAGCATGGGGCAGTGGGTCCTGGCATGTCTGGGTCTAGGG  545

seq1  TGGTGACTCTCAGACCCAGTCTCAGGAGGTACAGTGGGACAGAATCTCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTCTCAGACCCAGTCTCAGGAGGTACAGTGGGACAGAATCTCTT  595

seq1  CATCCATGTGTGCGCATAGGAATCTCCCATTCTCCTCCCCAGACTTTTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGTGTGCGCATAGGAATCTCCCATTCTCCTCCCCAGACTTTTCC  645

seq1  CCCATGTGTGATGCATACGACGGTGTCTGCTGGTGTCCGACACCAGAGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGTGATGCATACGACGGTGTCTGCTGGTGTCCGACACCAGAGAA  695

seq1  ACCAACAACAGGGTGTCCTGCCTCTCTTCCTAAAGGGCACTGGGGAAGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAACAGGGTGTCCTGCCTCTCTTCCTAAAGGGCACTGGGGAAGAG  745

seq1  AGTCGAGGCACCTCCCTTCTCTGATGTGGCGGGAAACCTTGGGTCGAGTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAGGCACCTCCCTTCTCTGATGTGGCGGGAAACCTTGGGTCGAGTT  795

seq1  TTTTACTCTGGATGGTGGTACAGTGGGGGCCAGGGCTCACAGCCGAGGTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCTGGATGGTGGTACAGTGGGGGCCAGGGCTCACAGCCGAGGTC  845

seq1  TGGAACTCTGGTTGGAGCTGTCTTCAGAGCTCTATTATGGAGCCCCAGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCTGGTTGGAGCTGTCTTCAGAGCTCTATTATGGAGCCCCAGCC  895

seq1  CTGGGCAGGAAAGCTCATTAGCAGACGTGATAGATGTGAGCACATGACTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGGAAAGCTCATTAGCAGACGTGATAGATGTGAGCACATGACTG  945

seq1  CCGAGTCGTGTCCCGTGTCCCTGTTGAACTGGAACTCCTGCTCCTTCTCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCGTGTCCCGTGTCCCTGTTGAACTGGAACTCCTGCTCCTTCTCC  995

seq1  ATTAGCAGCGGTGTCTGCATGCTCAGCCATCCCTCTGGACCCTTCTGAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGCGGTGTCTGCATGCTCAGCCATCCCTCTGGACCCTTCTGAAT  1045

seq1  TC  1045
      ||
seq2  TC  1047