BAC Information

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BAC

Clone NameB6Ng01-300D19
Chromosome5 (Build37)
Map Location 24,779,212 - 24,780,360
singlet/doubletsinglet
Overlap geneMll3
Upstream geneKcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300D19.bB6Ng01-300D19.g
ACCGA094864GA094865
length1,1351,190
definitionB6Ng01-300D19.b B6Ng01-300D19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacagccattgaatgctgatccaaacagctttttctctaagggg
aacactagcttaccctgagccatggttaaaaaccagattcaggacaccct
gaactccatcgtgttccactgagtttaagatgggattgacttttgccacc
acaggaccaaagaaagtcctcaatttgtgcattaattggtgagacatgag
gtatcggtaggttctagatgctgtctaaagacaggtttgggattggtgga
ggtaaacattaacaatgtaaactctatgttatagtcacaaagatgttagg
ccaagtacagatgttggtagtaaaaacaatgacggggatttggacatagc
cccaatcacttttatggtagatttgcagtgttctatctctctatggtgac
aaattctagttagctataggatctttgaatagaggcaggttcttcagagg
aaaaggtggacaaggggaaagccatgatgttgacaagggcaggttcatct
ctgtccaaaccaaggagccatctacggtttgagggagtactggtcctcat
cttacccaaagtggtggagaggacactatgagaagtcagaggctcggcac
accagatcaccaccccacaacagtagtttcacttgcctctgggatacccc
accgcctcaaggttctatgggacctaaacaaactcagtgttgctttggct
tgtgtctgttttgcttgctggttttgaaatagaggatagaacggggcact
gccctgtctcacactgtctgtttgccatgggcagctctgctatgattata
agtttgactttgaagatgaccagcacaagattccgtgtcactgtggagcg
gtgaactgccggaagtggatgaactgaatgcattccttgctatctcaccg
ggtggctcgtccctaggaagaggcgattcaacactttcattggattttgc
agacagaaagatattttttgttttctgactttttaagaaacagcttctgg
gagctctgattcctcagccttgtctgaaggatgctcagcacagaggagcc
ggcctaggctgcttgctgcacactgaggtcagcagagttcacagatgatc
agccactttttttttctttttccttcctcttcctt
gaattcatatctggtactggggaacagtactcctgccttgagctccttca
gtgatggagtatgatgtgagttacaaaatgaaataaagccattcttcctc
tacggatttatgtcatggtgtttttatcacagcaattgaaaccctaagac
agatgtcttcccattttctgatgctgtcttcaagttctcatggtagaagt
ccttcatgtccttaatagggttagacccaggagctatgtgtgtggagtgg
ggtactactgtgaatgggttgtttcctggcttctttcttaatatgtcttt
catttttatataggaaacctgctacaaatttttgagtgttcacttcatat
tttgcctctttcctgagtgtttattgattctaagaggtttggagtcctta
ggacagtggttctaacttcttggagttgaccctttcacaagagctgccca
ggaccatcctgcatatcagatatttacattatgattcatagcaatagcaa
gcttccagttctgaaggggcaatgaagataattttatggttgggggtcac
tacaactgtggaattgatttaaaggttcgtggcattaggaaggctgagaa
ccaccacagtaggatcttatgaatagaatcatatcaatcaaatgcaaaca
gcggcacgtcaagttcctttcctatcaatgtccatcttctggctcgtctt
gtcttactgctctggctgagacttcaagcactgcactgaagagacatgga
gatcgtgaacacctttgtcttctttctgctctgaactaggaatgctctaa
atttttctgcacttactacaatgttgactacagatttcttgtatatagta
tttattattttgaggtaagctcttgctattcctaccctctccatgatttt
taccatgagggacgttggattttgtgaaagttctttatcttcatctaaag
agaagatggtgtggtctctgtctttgaatctacttatgtcaggataccat
tttctgatttacaaagttgaacttattcctgcattctctggaataaacca
cccagtcatgatgaatgattcttttcagaatgatttgaatttagtttacc
gatatttaataggagttttgcatcttatgttcccagaatggtaattattc
acctgttcgtgtggggtcctcataattgtgagaggctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_24779212_24780360
seq2: B6Ng01-300D19.b_43_1177 (reverse)

seq1  AAGGAAACAAAAGGAAGGAAAGAAGAAAGAAAAAAGAAAAAAAAAGTGCT  50
                |||||||      || ||| ||||||||||||||||||  
seq2  ----------AAGGAAG------AGGAAGGAAAAAGAAAAAAAAAGTGGC  34

seq1  GGACCATTCTGTG-ACTCTGCTGACCTCAGTGTGCAGCAAGGCAGCCTA-  98
       || || |||||| |||||||||||||||||||||||||| |||||||| 
seq2  TGATCA-TCTGTGAACTCTGCTGACCTCAGTGTGCAGCAA-GCAGCCTAG  82

seq1  GCCGGCTCCTCTGTGCTGAGCATCCTTCAGACAAGGCTGAGGAATCAGAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCTCCTCTGTGCTGAGCATCCTTCAGACAAGGCTGAGGAATCAGAG  132

seq1  CTCCCAGAAGCTGTTTCTTAAAAAGTCAGAAAAC-AAAAATATCTTTCTG  197
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCCCAGAAGCTGTTTCTTAAAAAGTCAGAAAACAAAAAATATCTTTCTG  182

seq1  TCTGCAAAATCCAATG-AAGTGTTGAATCGCCTCTTCCTAGGGACGAGCC  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTGCAAAATCCAATGAAAGTGTTGAATCGCCTCTTCCTAGGGACGAGCC  232

seq1  ACCCGGTGAGATAGCAAGGAATGCATTCAGTTCATCCACTTCCGGCAGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGTGAGATAGCAAGGAATGCATTCAGTTCATCCACTTCCGGCAGTT  282

seq1  CACCGCTCCACAGTGACACGGAATCTTGTGCTGGTCATCTTCAAAGTCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCTCCACAGTGACACGGAATCTTGTGCTGGTCATCTTCAAAGTCAA  332

seq1  ACTTATAATCATAGCAGAGCTGCCCATGGCAAACAGACAGTGTGAGACAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAATCATAGCAGAGCTGCCCATGGCAAACAGACAGTGTGAGACAG  382

seq1  GGCAGTGCCCCGTTCTATCCTCTATTTCAAAACCAGCAAGCAAAACAGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGCCCCGTTCTATCCTCTATTTCAAAACCAGCAAGCAAAACAGAC  432

seq1  ACAAGCCAAAGCAACACTGAGTTTGTTTAGGTCCCATAGAACCTTGAGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAAAGCAACACTGAGTTTGTTTAGGTCCCATAGAACCTTGAGGC  482

seq1  GGTGGGGTATCCCAGAGGCAAGTGAAACTACTGTTGTGGGGTGGTGATCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTATCCCAGAGGCAAGTGAAACTACTGTTGTGGGGTGGTGATCT  532

seq1  GGTGTGCCGAGCCTCTGACTTCTCATAGTGTCCTCTCCACCACTTTGGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCCGAGCCTCTGACTTCTCATAGTGTCCTCTCCACCACTTTGGGT  582

seq1  AAGATGAGGACCAGTACTCCCTCAAACCGTAGATGGCTCCTTGGTTTGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGACCAGTACTCCCTCAAACCGTAGATGGCTCCTTGGTTTGGA  632

seq1  CAGAGATGAACCTGCCCTTGTCAACATCATGGCTTTCCCCTTGTCCACCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGAACCTGCCCTTGTCAACATCATGGCTTTCCCCTTGTCCACCT  682

seq1  TTTCCTCTGAAGAACCTGCCTCTATTCAAAGATCCTATAGCTAACTAGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGAAGAACCTGCCTCTATTCAAAGATCCTATAGCTAACTAGAA  732

seq1  TTTGTCACCATAGAGAGATAGAACACTGCAAATCTACCATAAAAGTGATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACCATAGAGAGATAGAACACTGCAAATCTACCATAAAAGTGATT  782

seq1  GGGGCTATGTCCAAATCCCCGTCATTGTTTTTACTACCAACATCTGTACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTATGTCCAAATCCCCGTCATTGTTTTTACTACCAACATCTGTACT  832

seq1  TGGCCTAACATCTTTGTGACTATAACATAGAGTTTACATTGTTAATGTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAACATCTTTGTGACTATAACATAGAGTTTACATTGTTAATGTTT  882

seq1  ACCTCCACCAATCCCAAACCTGTCTTTAGACAGCATCTAGAACCTACCGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACCAATCCCAAACCTGTCTTTAGACAGCATCTAGAACCTACCGA  932

seq1  TACCTCATGTCTCACCAATTAATGCACAAATTGAGGACTTTCTTTGGTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATGTCTCACCAATTAATGCACAAATTGAGGACTTTCTTTGGTCC  982

seq1  TGTGGTGGCAAAAGTCAATCCCATCTTAAACTCAGTGGAACACGATGGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGCAAAAGTCAATCCCATCTTAAACTCAGTGGAACACGATGGAG  1032

seq1  TTCAGGGTGTCCTGAATCTGGTTTTTAACCATGGCTCAGGGTAAGCTAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTGTCCTGAATCTGGTTTTTAACCATGGCTCAGGGTAAGCTAGT  1082

seq1  GTTCCCCTTAGAGAAAAAGCTGTTTGGATCAGCATTCAATGGCTGTAGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCTTAGAGAAAAAGCTGTTTGGATCAGCATTCAATGGCTGTAGAA  1132

seq1  TTC  1149
      |||
seq2  TTC  1135