BAC Information

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BAC

Clone NameB6Ng01-300F04
Chromosome5 (Build37)
Map Location 16,687,809 - 16,758,082
singlet/doubletdoublet
Overlap geneLOC626390
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300F04.bB6Ng01-300F04.g
ACCGA094929GA094930
length4861,090
definitionB6Ng01-300F04.b B6Ng01-300F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,687,809 - 16,688,300)(16,756,990 - 16,758,082)
sequence
cacatacatatcatacacgattaataacaacaataacaataatatattat
ttaatgaacaaactccacagatgctcatggagcgccttcctaagaactag
tgtatgtccagaagaagccttagtgtcgcgtagcacaacttgtataggaa
gacaaaattcactggcaagtgttagaaagaatcctatagagaattacagc
tttttattttctaaatatggtataaattttattttaatagaatatttcta
taaaggtgtgggagaatgtatgtttttgatatgttcaaaaactccaaaaa
aattcttaaaataatgttaaactaaatgactatgacatatgaaaagatta
catcatagtataatttaattgataggaaaatttctttctagatgaaagta
actggtttgtgtgtctcagcagacactatggtaatatatcccttccccta
cctctagctggagtggtgtgtgtgtgtagggggggg

gaattcacatcaccaaagggcagaagaaagaagataaagcagaaatatgt
aaaattatttatctaaactttcccaactttaatcaacaccataaactgtg
agactgaagacattgattaaatctcaacaatagcaaacataaggataaga
ggtatattacaaagaaggcccttaatatcaacaccaatgagaaaaaatga
agcctgcaaagagaagaaataaatgttactttcaaaggaacagaagcaag
atctacagacagcagtgaggagatggcaccaagtagaatataacccaata
gaagtatctaatataagaggaaaatgataagagaatgctcagccagattc
aaaactgaaggggatgcaggcataacatgaagagtctctcatgaaaagac
ttaagtgaagagtaaaatcaaagatttttggatcagaaaaaaagtgataa
ttaaagtctggagtcatgaaagggaatgaagaatgttagaatgtttctgg
agaaatgtatttcactttctcttaatatatgtcataggttctagaagaga
tatttccattggcaaagtgcttgccaggtaagcatgaggacacagcagcc
aggtaaagtgctgtaggaagcagggcacaactataaccatagcacggaag
gagtcccaggaaaataatgaggattttctggccagctagttccaaagagt
ttgagttcattgagactcttatgttaaaaaataaaatggcaagcaataga
ggaagatgcctattatcaatctcttttcttcaaacatgcacacacacaca
atgtgcacacatacgtatgtagcacatacataaaaataagatggagttcc
taaaaataagattaatatagtatgttcacttgttatataagattgacata
tttagagaaaagagtacctaagttagaatagaatatatagtcttagagtc
tctggaagcaatatggagaatggccttgggtgaatttcatcttttaggag
gagtctggagtgataagaggataaagtataattgttttacatcacaagtt
catgacatttgttggaacagtgcaatgtttctttataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16687809_16688300
seq2: B6Ng01-300F04.b_47_538

seq1  GAATTCCACATACATATCATACACGATTAATAACAACAATAACAATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATACATATCATACACGATTAATAACAACAATAACAATAATA  50

seq1  TATTATTTAATGAACAAACTCCACAGATGCTCATGGAGCGCCTTCCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTAATGAACAAACTCCACAGATGCTCATGGAGCGCCTTCCTAAG  100

seq1  AACTAGTGTATGTCCAGAAGAAGCCTTAGTGTCGCGTAGCACAACTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTGTATGTCCAGAAGAAGCCTTAGTGTCGCGTAGCACAACTTGTA  150

seq1  TAGGAAGACAAAATTCACTGGCAAGTGTTAGAAAGAATCCTATAGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGACAAAATTCACTGGCAAGTGTTAGAAAGAATCCTATAGAGAAT  200

seq1  TACAGCTTTTTATTTTCTAAATATGGTATAAATTTTATTTTAATAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTTTTATTTTCTAAATATGGTATAAATTTTATTTTAATAGAATA  250

seq1  TTTCTATAAAGGTGTGGGAGAATGTATGTTTTTGATATGTTCAAAAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAAAGGTGTGGGAGAATGTATGTTTTTGATATGTTCAAAAACTC  300

seq1  CAAAAAAATTCTTAAAATAATGTTAAACTAAATGACTATGACATATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATTCTTAAAATAATGTTAAACTAAATGACTATGACATATGAAA  350

seq1  AGATTACATCATAGTATAATTTAATTGATAGGAAAATTTCTTTCTAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACATCATAGTATAATTTAATTGATAGGAAAATTTCTTTCTAGATG  400

seq1  AAAGTAACTGGTTTGTGTGTCTCAGCAGACACTATGGTAATATATCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACTGGTTTGTGTGTCTCAGCAGACACTATGGTAATATATCCCTT  450

seq1  CCCCTACCTCTAGCTGGAGTGGTGTGTGTGTGTAGGGGGGGG  492
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCTCTAGCTGGAGTGGTGTGTGTGTGTAGGGGGGGG  492


seq1: chr5_16756990_16758082
seq2: B6Ng01-300F04.g_67_1156 (reverse)

seq1  ATTTATAAAGAAACATTGCACTTGTTTCCAACAAATTGTCATGAACTTGG  50
      ||||||||||||||||||||||   |||||||||| |||||||||||| |
seq2  ATTTATAAAGAAACATTGCACT--GTTCCAACAAA-TGTCATGAACTT-G  46

seq1  TGATGTAAAACAA-TATACTTTATCCTCTTATCACTCCAGACTCCTCCT-  98
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  TGATGTAAAACAATTATACTTTATCCTCTTATCACTCCAGACTCCTCCTA  96

seq1  AAAGATGAAATTCA-CCAAGGCCATTCTCCATATTGCTTCCAGAGACTCT  147
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGATGAAATTCACCCAAGGCCATTCTCCATATTGCTTCCAGAGACTCT  146

seq1  AAGACTAATATATTTCTATTCTAACTTAGGTACTCTTTTCTCTAAATATG  197
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGACT-ATATA-TTCTATTCTAACTTAGGTACTCTTTTCTCTAAATATG  194

seq1  TCAATCTTATATAACAAGTGAACATACTATATTAATCTTATTTTTAGGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTATATAACAAGTGAACATACTATATTAATCTTATTTTTAGGAA  244

seq1  CTCCATCTTATTTTTATGTATGTGCTACATACGTATGTGTGCACATTGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTATTTTTATGTATGTGCTACATACGTATGTGTGCACATTGTG  294

seq1  TGTGTGTGCATGTTTGAAGAAAAGAGATTGATAATAGGCATCTTCCTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCATGTTTGAAGAAAAGAGATTGATAATAGGCATCTTCCTCTA  344

seq1  TTGCTTGCCATTTTATTTTTTAACATAAGAGTCTCAATGAACTCAAACTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCCATTTTATTTTTTAACATAAGAGTCTCAATGAACTCAAACTC  394

seq1  TTTGGAACTAGCTGGCCAGAAAATCCTCATTATTTTCCTGGGACTCCTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACTAGCTGGCCAGAAAATCCTCATTATTTTCCTGGGACTCCTTC  444

seq1  CGTGCTATGGTTATAGTTGTGCCCTGCTTCCTACAGCACTTTACCTGGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTATGGTTATAGTTGTGCCCTGCTTCCTACAGCACTTTACCTGGCT  494

seq1  GCTGTGTCCTCATGCTTACCTGGCAAGCACTTTGCCAATGGAAATATCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCCTCATGCTTACCTGGCAAGCACTTTGCCAATGGAAATATCTC  544

seq1  TTCTAGAACCTATGACATATATTAAGAGAAAGTGAAATACATTTCTCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAACCTATGACATATATTAAGAGAAAGTGAAATACATTTCTCCAG  594

seq1  AAACATTCTAACATTCTTCATTCCCTTTCATGACTCCAGACTTTAATTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCTAACATTCTTCATTCCCTTTCATGACTCCAGACTTTAATTAT  644

seq1  CACTTTTTTTCTGATCCAAAAATCTTTGATTTTACTCTTCACTTAAGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTTTCTGATCCAAAAATCTTTGATTTTACTCTTCACTTAAGTCT  694

seq1  TTTCATGAGAGACTCTTCATGTTATGCCTGCATCCCCTTCAGTTTTGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAGAGACTCTTCATGTTATGCCTGCATCCCCTTCAGTTTTGAAT  744

seq1  CTGGCTGAGCATTCTCTTATCATTTTCCTCTTATATTAGATACTTCTATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGAGCATTCTCTTATCATTTTCCTCTTATATTAGATACTTCTATT  794

seq1  GGGTTATATTCTACTTGGTGCCATCTCCTCACTGCTGTCTGTAGATCTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATATTCTACTTGGTGCCATCTCCTCACTGCTGTCTGTAGATCTTG  844

seq1  CTTCTGTTCCTTTGAAAGTAACATTTATTTCTTCTCTTTGCAGGCTTCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTCCTTTGAAAGTAACATTTATTTCTTCTCTTTGCAGGCTTCAT  894

seq1  TTTTTCTCATTGGTGTTGATATTAAGGGCCTTCTTTGTAATATACCTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCATTGGTGTTGATATTAAGGGCCTTCTTTGTAATATACCTCTT  944

seq1  ATCCTTATGTTTGCTATTGTTGAGATTTAATCAATGTCTTCAGTCTCACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATGTTTGCTATTGTTGAGATTTAATCAATGTCTTCAGTCTCACA  994

seq1  GTTTATGGTGTTGATTAAAGTTGGGAAAGTTTAGATAAATAATTTTACAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGGTGTTGATTAAAGTTGGGAAAGTTTAGATAAATAATTTTACAT  1044

seq1  ATTTCTGCTTTATCTTCTTTCTTCTGCCCTTTGGTGATGTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCTTTATCTTCTTTCTTCTGCCCTTTGGTGATGTGAATTC  1090


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