BAC Information

Click to search

BAC

Clone NameB6Ng01-300P24
Chromosome5 (Build37)
Map Location 96,409,191 - 96,544,034
singlet/doubletdoublet
Overlap geneCnot6l
Upstream geneLOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231
Downstream geneLOC100040559, Mrpl1, Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300P24.bB6Ng01-300P24.g
ACCGA095429GA095430
length1,0131,011
definitionB6Ng01-300P24.b B6Ng01-300P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,409,191 - 96,410,204)(96,543,041 - 96,544,034)
sequence
gaattctggaagcttccaatgggccctgtttaaatctagttactgtgtct
taacatttccaatccttgtagtgggtacctacctccccaaaccccgaaac
tctcatctctagatgtatttttgaagataagttaggagaaatcccttcag
tgatttgaagattgaaagcaaagtctaaccaagtgaagcctcggagaatc
agagcacacactgcttgagtagaggagccagtttctgtccccacacccac
atagggtggcctgtaccctctccttcaggaggggatgatacctctggacc
ctgtgggaacctgcacacttgtgcaccttcccacccacagacaactataa
atgcatatagttaaatccaataataaaggttatatggagggtatgcatag
gttcattggtgtttgtgcttgttcatttgtttacgtgtcttcactagact
ctggagtgaagggctccttttcactcccatgtccccatgattgccctgct
ctgtctttctgacctgcctcattctgacgatgataaacaatgccattttc
ccatctaagcaactgctcctgtaacttttgtttaacttagatcacacata
ctaacttaaggaacctttgaggcactcctgtgaagtatacaagaccagtg
ttatgagccatttacagagggcctgccaatggaagaaatggagtaagaac
tgagaaatcattgaaaatgtctacccatgattctaaaaactcaccagata
tctgaatccccttctatcctaaatttcctgttaacctctagtggaacacc
tccaatgttaggaaccccatatatgaaggacactgaagccccaactcagg
gcaatacttcagatgtgtaagtcaaagttctccagagaaataacaccaaa
tatgtatgtgttatatgtgtgtatatatacagacagaaagattattgcct
acagtaaggactaatatacacacacacacatatatatgtatatatatatg
ctataatatatat
gaattctcttaggattatttaaggcatgtttcgcctttagaactaggttc
tttttcttttattcctaccatgataaatttgttcctttcagaattttatt
tatgccttatttccactgtaactttcttactgttagagctttgtctctgt
ctgattgttctagttctacttttttcatgcccagatattgtgtctctttg
atctatgctaatggctgagacctaagagctttttactttacttgacttac
tatgctttttaatatccagcattttgtcttctcttctcttctcttctctt
ctcttctcttctcttctcttctcttctctttttctttcttccttcctttc
ttccttcctttctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctttcaattcatgtagaattcttttgtatctgg
ctttgtcctgcttatttcattcagctgtttgtgtcctcggtcagtaactt
tgttctttgatttattttaacacacttagatttctggaatttcatctcaa
cttactatctaactagatgccatgactgtagcctcagtgattttaaaaag
agttatgttttttttcctttttattatgcatctggtattactttgtttgg
ttttatgtatgtattatcagttttcattctttcagttgaagtatttgcag
tgttcatgtgggccttgtatgtggtagagttgagtgtatagtgaagacct
cagctccttcagtctaggaggtcagggtacctgttgtaaactctggattg
tttccctggataggatattaaactgctaaagcaaccacagccttctttgt
tattacaggtgttagactagtcagttaatagcaataaacctcaatttgaa
tttagtatctggtgggaggattaaccaacccaagggtgagtatagagaat
tcctcatatttttagattaataaaataaggaccttggaaggtataggata
taggattaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96409191_96410204
seq2: B6Ng01-300P24.b_46_1058

seq1  GAATTCTGGAAGCTTCCAATGGGCCCTGTTTAAATCTAGTTACTGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAAGCTTCCAATGGGCCCTGTTTAAATCTAGTTACTGTGTCT  50

seq1  TAACATTTCCAATCCTTGTAGTGGGTACCTACCTCCCCAAACCCCGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTCCAATCCTTGTAGTGGGTACCTACCTCCCCAAACCCCGAAAC  100

seq1  TCTCATCTCTAGATGTATTTTTGAAGATAAGTTAGGAGAAATCCCTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTCTAGATGTATTTTTGAAGATAAGTTAGGAGAAATCCCTTCAG  150

seq1  TGATTTGAAGATTGAAAGCAAAGTCTAACCAAGTGAAGCCTCGGAGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGAAGATTGAAAGCAAAGTCTAACCAAGTGAAGCCTCGGAGAATC  200

seq1  AGAGCACACACTGCTTGAGTAGAGGAGCCAGTTTCTGTCCCCACACCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACACACTGCTTGAGTAGAGGAGCCAGTTTCTGTCCCCACACCCAC  250

seq1  ATAGGGTGGCCTGTACCCTCTCCTTCAGGAGGGGATGATACCTCTGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTGGCCTGTACCCTCTCCTTCAGGAGGGGATGATACCTCTGGACC  300

seq1  CTGTGGGAACCTGCACACTTGTGCACCTTCCCACCCACAGACAACTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAACCTGCACACTTGTGCACCTTCCCACCCACAGACAACTATAA  350

seq1  ATGCATATAGTTAAATCCAATAATAAAGGTTATATGGAGGGTATGCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAGTTAAATCCAATAATAAAGGTTATATGGAGGGTATGCATAG  400

seq1  GTTCATTGGTGTTTGTGCTTGTTCATTTGTTTACGTGTCTTCACTAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGGTGTTTGTGCTTGTTCATTTGTTTACGTGTCTTCACTAGACT  450

seq1  CTGGAGTGAAGGGCTCCTTTTCACTCCCATGTCCCCATGATTGCCCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGAAGGGCTCCTTTTCACTCCCATGTCCCCATGATTGCCCTGCT  500

seq1  CTGTCTTTCTGACCTGCCTCATTCTGACGATGATAAACAATGCCATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCTGACCTGCCTCATTCTGACGATGATAAACAATGCCATTTTC  550

seq1  CCATCTAAGCAACTGCTCCTGTAACTTTTGTTTAACTTAGATCACACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAAGCAACTGCTCCTGTAACTTTTGTTTAACTTAGATCACACATA  600

seq1  CTAACTTAAGGAACCTTTGAGGCACTCCTGTGAAGTATACAAGACCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTAAGGAACCTTTGAGGCACTCCTGTGAAGTATACAAGACCAGTG  650

seq1  TTATGAGCCATTTACAGAGGGCCTGCCAATGGAAGAAATGGAGTAAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCCATTTACAGAGGGCCTGCCAATGGAAGAAATGGAGTAAGAAC  700

seq1  TGAGAAATCATTGAAAATGTCTACCCATGATTCTAAAAACTCACCAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATCATTGAAAATGTCTACCCATGATTCTAAAAACTCACCAGATA  750

seq1  TCTGAATCCCCTTCTATCCTAAATTTCCTGTTAACCTCTAGTGGAACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATCCCCTTCTATCCTAAATTTCCTGTTAACCTCTAGTGGAACACC  800

seq1  TCCAATGTTAGGAACCCCATATATGAAGGACACTGAAGCCCCAACTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGTTAGGAACCCCATATATGAAGGACACTGAAGCCCCAACTCAGG  850

seq1  GCAATACTTCAGATGTGTAAGTCAAAGTTCTCCAGAGAAATAACACCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACTTCAGATGTGTAAGTCAAAGTTCTCCAGAGAAATAACACCAAA  900

seq1  TATGTATGTGTTATATGTGTGTATATATACAGACAGAAAGATTATTGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTGTTATATGTGTGTATATATACAGACAGAAAGATTATTGCCT  950

seq1  ACAGTAAGAACTAAATATACACACACACACATATATATGTATATATATAT  1000
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGGACT-AATATACACACACACACATATATATGTATATATATAT  999

seq1  G-TATATATATATAT  1014
      | |||| ||||||||
seq2  GCTATA-ATATATAT  1013

seq1: chr5_96543041_96544034
seq2: B6Ng01-300P24.g_67_1077 (reverse)

seq1  ATTTAATCCT-TATCCT-TACCCTCCAA-GTCCTTATTTTATT-ATCT-A  45
      |||||||||| |||||| |||| ||||| |||||||||||||| |||| |
seq2  ATTTAATCCTATATCCTATACCTTCCAAGGTCCTTATTTTATTAATCTAA  50

seq1  AAATATGA-GAATTCTCTATAC-CACCCTTGG--TTGTTTATCCTCCCA-  90
      |||||||| ||||||||||||| |||||||||  | ||| ||||||||| 
seq2  AAATATGAGGAATTCTCTATACTCACCCTTGGGTTGGTTAATCCTCCCAC  100

seq1  CAGATACTAAATTCAAA-TGAGG-TTATTGCTATTAACTGACTAGTCTAA  138
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  CAGATACTAAATTCAAATTGAGGTTTATTGCTATTAACTGACTAGTCTAA  150

seq1  CACCTGTAATAAC-AAGAA-GCTGTGGTTGCTTTAGCAG-TTAATATCCT  185
      ||||||||||||| ||||| ||||||||||||||||||| ||||||||||
seq2  CACCTGTAATAACAAAGAAGGCTGTGGTTGCTTTAGCAGTTTAATATCCT  200

seq1  ATCCAGGG-AACAATCCAGAGTTTACAACAGGTACCCTGACCTCCTAGAC  234
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGAAACAATCCAGAGTTTACAACAGGTACCCTGACCTCCTAGAC  250

seq1  TG-AGGAGCTGAGGTCTTCACTATACACTCAACTCTACCACATACAAGGC  283
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGCTGAGGTCTTCACTATACACTCAACTCTACCACATACAAGGC  300

seq1  CCACATGAACACTGCAAATACTTCAACTGAAAGAATGAAAACTGATAATA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAACACTGCAAATACTTCAACTGAAAGAATGAAAACTGATAATA  350

seq1  CATACATAAAACCAAACAAAGTAATACCAGATGCATAATAAAAAGGAAAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAAAACCAAACAAAGTAATACCAGATGCATAATAAAAAGGAAAA  400

seq1  AAAACATAACTCTTTTTAAAATCACTGAGGCTACAGTCATGGCATCTAGT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAACTCTTTTTAAAATCACTGAGGCTACAGTCATGGCATCTAGT  450

seq1  TAGATAGTAAGTTGAGATGAAATTCCAGAAATCTAAGTGTGTTAAAATAA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTAAGTTGAGATGAAATTCCAGAAATCTAAGTGTGTTAAAATAA  500

seq1  ATCAAAGAACAAAGTTACTGACCGAGGACACAAACAGCTGAATGAAATAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAACAAAGTTACTGACCGAGGACACAAACAGCTGAATGAAATAA  550

seq1  GCAGGACAAAGCCAGATACAAAAGAATTCTACATGAATTGAAAGAAAGAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAAAGCCAGATACAAAAGAATTCTACATGAATTGAAAGAAAGAA  600

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  650

seq1  AAAGGAAGGAAGAAAGGAAGGAAGAAAGAAAAAGAGAAGAGAAGAGAAGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGAAGAAAGGAAGGAAGAAAGAAAAAGAGAAGAGAAGAGAAGA  700

seq1  GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGACAAAATGCTGGATAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGACAAAATGCTGGATAT  750

seq1  TAAAAAGCATAGTAAGTCAAGTAAAGTAAAAAGCTCTTAGGTCTCAGCCA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCATAGTAAGTCAAGTAAAGTAAAAAGCTCTTAGGTCTCAGCCA  800

seq1  TTAGCATAGATCAAAGAGACACAATATCTGGGCATGAAAAAAGTAGAACT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAGATCAAAGAGACACAATATCTGGGCATGAAAAAAGTAGAACT  850

seq1  AGAACAATCAGACAGAGACAAAGCTCTAACAGTAAGAAAGTTACAGTGGA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATCAGACAGAGACAAAGCTCTAACAGTAAGAAAGTTACAGTGGA  900

seq1  AATAAGGCATAAATAAAATTCTGAAAGGAACAAATTTATCATGGTAGGAA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCATAAATAAAATTCTGAAAGGAACAAATTTATCATGGTAGGAA  950

seq1  TAAAAGAAAAAGAACCTAGTTCTAAAGGCGAAACATGCCTTAAATAATCC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAAAGAACCTAGTTCTAAAGGCGAAACATGCCTTAAATAATCC  1000

seq1  TAAGAGAATTC  994
      |||||||||||
seq2  TAAGAGAATTC  1011