BAC Information

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BAC

Clone NameB6Ng01-301A11
Chromosome5 (Build37)
Map Location 98,977,048 - 98,978,227
singlet/doubletsinglet
Overlap gene1700007G11Rik
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301A11.bB6Ng01-301A11.g
ACCGA095449GA095450
length4741,182
definitionB6Ng01-301A11.b B6Ng01-301A11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttagctctgagccccatcttttaagggggttatttgattttctgg
agtccaccctcttgagttctttatatatattggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggccttttttg
tcttattgatggtgtcttttgccttgcagaagctttgcagtttcatgagg
tcccatttgtcaactattggatggatcacagggcccccaatggaggagct
agagaaagtatccaaggagctaaagagatttgcaaccctgtaggtgcaac
attatgaactaaccagtaccccggagctcttgactctagctgcatatgta
tcaaaagatggcctagtcggccatcactggaaagagaggcccagtggaca
ggcaaactttatatgccccagtacaggggatcgacagggccaaaaaatgg
gaatgggtgggtaggggagtgggg

gaattcctcagcacacattgaaaaacatatgtgaagaggagttggagctg
ctattgagtcaagtaaacaaagggactctgttgagaactgttgtgtttgc
atagagtaactgctgtcaggtcccaacagaggggcacctggacacaggtg
agcactgaagggagaaggggaaacacccagtcaggaaagccaaagcatca
tgggaacagcctgtcataggctcctgctccagggtacatttcctgccagt
cctgacacacccgtggagttcccgacagtgctgaggactgaccacccaca
ccgcatgctacgaatcaagcaggcttagtggacacggctatgaggcagtt
acccagcacacggagccaggagcatctcacatctgctccactcggttttc
tttcctgtttcttttttgtttgttgctctgtcttggttttcagtgtgata
aaatagtcatgactcaagcttagcatgcttcagtgtaaacttgcatggca
ttaggggcattccctgctgtttgggccatcgccatatttcagccatctcc
acaaagcattgatcagcctgtcctggaaatctgtgcattaacccatggct
ccccatgtcccttttcctcgcttatgacaagctacctcatatatgtagaa
tcacattttgttttccactgttgatataagagcttaggaacatggttttt
agtttctttagctcactgcaatagatgtttagaaacacagtgaggggtca
cactgcgagacagtaaaccaaaaccccaattgtcctttttgtaccacctc
acatgcagaagaactatctgggcccacaagacctaccattagccctctac
aggtttgatgcctagtactaaaggacccctcactagaatctacttctgaa
aagccacttcgcatggaatttaaaacttccactgcatatgtccattttta
gtatacacattcaagtcatatgctcacagtgatatcattggacctcaatt
atagaaactaaaggagaaggataaaattttcactggaaattggatcattt
tggtaattcagaagttatagaccttccaggcagtcagcccacgtgtgacc
ttatttacactttcttcatatcttcagtctagacaatgttttaggcacct
tccaactgattagattttcttgaatttcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98977048_98978227
seq2: B6Ng01-301A11.g_69_1250 (reverse)

seq1  ATGGGAAAT--CAGAAA--CTAACCAGTTGGA--GTGCTTAAAACATTTG  44
      |||||||||   |||||  |||| ||||||||  |||| ||||||| |||
seq2  ATGGGAAATTCAAGAAAATCTAATCAGTTGGAAGGTGCCTAAAACA-TTG  49

seq1  TCTAAGACTGGAGGATATGAAGACAGTGTAA--TAGTTCACAACGT-GGC  91
      ||| ||||| || |||||||||| |||||||   || |||| |||| |||
seq2  TCT-AGACT-GAAGATATGAAGAAAGTGTAAATAAGGTCAC-ACGTGGGC  96

seq1  TGACTGGCTG--AAGTCTATAACTTCTGGATTACCAAAATGATCCCATTT  139
      |||||| |||  | |||||||||||||| |||||||||||||||| ||||
seq2  TGACTGCCTGGAAGGTCTATAACTTCTGAATTACCAAAATGATCCAATTT  146

seq1  CCAGGTGGAAAATTTTATCCTTCTCCTTTAGTTTCTATTAAATTTGAGGT  189
      ||||   |||||||||||||||||||||||||||||||   | |||||||
seq2  CCAG--TGAAAATTTTATCCTTCTCCTTTAGTTTCTAT---AATTGAGGT  191

seq1  CCAATGATATCACTGTGAGCATATGACTTTGAATGTGTATACTAAAAATG  239
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAATGATATCACTGTGAGCATATGAC-TTGAATGTGTATACTAAAAATG  240

seq1  GACATATGCAGTGGAAGTTTTAAATTCCATGCGAAGTGGCTTTTCAGAAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATGCAGTGGAAGTTTTAAATTCCATGCGAAGTGGCTTTTCAGAAG  290

seq1  TAGATTCTAGTGAGGGGTCC-TTAGTACTAGGCATCAAACCTGTAGAGGG  338
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGATTCTAGTGAGGGGTCCTTTAGTACTAGGCATCAAACCTGTAGAGGG  340

seq1  CTAATGGTAGGTCTTGTGGGCCCAGATAGTTCTTCTGCATGTGAGGTGGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGTAGGTCTTGTGGGCCCAGATAGTTCTTCTGCATGTGAGGTGGT  390

seq1  ACAAAAAGGACAATTGGGGTTTTGGTTTACTGTCTCGCAGTGTGACCCCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGGACAATTGGGGTTTTGGTTTACTGTCTCGCAGTGTGACCCCT  440

seq1  CACTGTGTTTCTAAACATCTATTGCAGTGAGCTAAAGAAACTAAAAACCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTTTCTAAACATCTATTGCAGTGAGCTAAAGAAACTAAAAACCA  490

seq1  TGTTCCTAAGCTCTTATATCAACAGTGGAAAACAAAATGTGATTCTACAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAAGCTCTTATATCAACAGTGGAAAACAAAATGTGATTCTACAT  540

seq1  ATATGAGGTAGCTTGTCATAAGCGAGGAAAAGGGACATGGGGAGCCATGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGGTAGCTTGTCATAAGCGAGGAAAAGGGACATGGGGAGCCATGG  590

seq1  GTTAATGCACAGATTTCCAGGACAGGCTGATCAATGCTTTGTGGAGATGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGCACAGATTTCCAGGACAGGCTGATCAATGCTTTGTGGAGATGG  640

seq1  CTGAAATATGGCGATGGCCCAAACAGCAGGGAATGCCCCTAATGCCATGC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATGGCGATGGCCCAAACAGCAGGGAATGCCCCTAATGCCATGC  690

seq1  AAGTTTACACTGAAGCATGCTAAGCTTGAGTCATGACTATTTTATCACAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTACACTGAAGCATGCTAAGCTTGAGTCATGACTATTTTATCACAC  740

seq1  TGAAAACCAAGACAGAGCAACAAACAAAAAAGAAACAGGAAAGAAAACCG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCAAGACAGAGCAACAAACAAAAAAGAAACAGGAAAGAAAACCG  790

seq1  AGTGGAGCAGATGTGAGATGCTCCTGGCTCCGTGTGCTGGGTAACTGCCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCAGATGTGAGATGCTCCTGGCTCCGTGTGCTGGGTAACTGCCT  840

seq1  CATAGCCGTGTCCACTAAGCCTGCTTGATTCGTAGCATGCGGTGTGGGTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCGTGTCCACTAAGCCTGCTTGATTCGTAGCATGCGGTGTGGGTG  890

seq1  GTCAGTCCTCAGCACTGTCGGGAACTCCACGGGTGTGTCAGGACTGGCAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCTCAGCACTGTCGGGAACTCCACGGGTGTGTCAGGACTGGCAG  940

seq1  GAAATGTACCCTGGAGCAGGAGCCTATGACAGGCTGTTCCCATGATGCTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTACCCTGGAGCAGGAGCCTATGACAGGCTGTTCCCATGATGCTT  990

seq1  TGGCTTTCCTGACTGGGTGTTTCCCCTTCTCCCTTCAGTGCTCACCTGTG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCCTGACTGGGTGTTTCCCCTTCTCCCTTCAGTGCTCACCTGTG  1040

seq1  TCCAGGTGCCCCTCTGTTGGGACCTGACAGCAGTTACTCTATGCAAACAC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGCCCCTCTGTTGGGACCTGACAGCAGTTACTCTATGCAAACAC  1090

seq1  AACAGTTCTCAACAGAGTCCCTTTGTTTACTTGACTCAATAGCAGCTCCA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCTCAACAGAGTCCCTTTGTTTACTTGACTCAATAGCAGCTCCA  1140

seq1  ACTCCTCTTCACATATGTTTTTCAATGTGTGCTGAGGAATTC  1180
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCTTCACATATGTTTTTCAATGTGTGCTGAGGAATTC  1182


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