BAC Information

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BAC

Clone NameB6Ng01-301H24
Chromosome5 (Build37)
Map Location 123,308,836 - 123,399,587
singlet/doubletdoublet
Overlap geneRnf34, Fbxl10
Upstream geneCutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5
Downstream geneLOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301H24.bB6Ng01-301H24.g
ACCGA095796GA095797
length1,097407
definitionB6Ng01-301H24.b B6Ng01-301H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,308,836 - 123,309,924)(123,399,174 - 123,399,587)
sequence
gaattcaagatgtcttagtctacataaggagttctagggcagcaaagact
agataaactcttgtctcaaagactgggaagggggttagggtgtggtgaga
gcaagcttcctttggaagactggtggaagacttttcataatgaacgatca
ctggtagcctggttaacatgcttctgtgcataagccagccatgattctag
agtctaagataggagctgttaattattggcttttgaaagcagcattatct
tgagaattacagaagtgatacttgagttagtaataaagatacaaagacaa
ccatatataaagaaccctgtgtaccagctttcttttctccttctattgaa
catctgtgagaacagcattatcactccaagttgcctttaagcttgatgag
caaataatacttgacataaaaataagtggaactgtggtatttattatctg
gtgtcatcttagctaataccgcaggtccattgagttccattatacaccac
gttgtctaggttctagaatatgtttatgaaataatctgcttgcctctgct
tcccttcccaagtgctgggattaaaggcatgtgccaccactgcccaggcc
caaaaaaaaaaaaaaaaaaaaaaggtcccaaatactgtctcctttattct
ttaagcatgggaaacttgctctggcctcatctttgaaaatctgtatctat
ttcagacagtcttgcatatcacttttgtgcgactaatcaatgaggagctg
tagatgcagcgctctatacttgagagtacttgtcaagcccgggtccactc
ccacaacacacaaagaaagattattgttatatgtggtgtagtgattagcc
atagtctccctgagaaataaaggaggcaagaaggaaagaaatcaaaagac
cccttaaagaaaattgttggggtggagaggcaaaggtttagttttattta
tttattcttttgtgaggctttggctattggaaatgattatttaatggctt
ttgttcttgaaaaggtagagtagccctctgcctttaagtacttacttata
ccaatgaatggatatattctttttatttattgcatgaatttggtttt
tagggggcctagctgctacaaagggggctggcagctagggagaaacgaag
ctatcagagccacagagccccggatggagcagaaaaggaagcctcggagg
tgggtggggggtggggcaagggtcgaaactgatagtggcctgtgggttgc
catttctcttgggaacctgcaagccaaggtgctgtctgtgagcgtctgtg
gtgggtgacccgtgcttgagatttgtcacctgatcctgggggcatccccc
aggagggaaactccacttcgatagaggaggaaattccccatctgccacct
tcataaaaggctgttgagtcaggtgactctgcagtggtaggtcgctcgcc
tcctgtggtttgggcttgacttgtgttttttgttccccactcctgccctg
cacctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123308836_123309924
seq2: B6Ng01-301H24.b_45_1141

seq1  GAATTCAAGATGTCTTAGTCTACATAAGGAGTTCTAGGGCAGCAAAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATGTCTTAGTCTACATAAGGAGTTCTAGGGCAGCAAAGACT  50

seq1  AGATAAACTCTTGTCTCAAAGACTGGGAAGGGGGTTAGGGTGTGGTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACTCTTGTCTCAAAGACTGGGAAGGGGGTTAGGGTGTGGTGAGA  100

seq1  GCAAGCTTCCTTTGGAAGACTGGTGGAAGACTTTTCATAATGAACGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTTCCTTTGGAAGACTGGTGGAAGACTTTTCATAATGAACGATCA  150

seq1  CTGGTAGCCTGGTTAACATGCTTCTGTGCATAAGCCAGCCATGATTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGCCTGGTTAACATGCTTCTGTGCATAAGCCAGCCATGATTCTAG  200

seq1  AGTCTAAGATAGGAGCTGTTAATTATTGGCTTTTGAAAGCAGCATTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGATAGGAGCTGTTAATTATTGGCTTTTGAAAGCAGCATTATCT  250

seq1  TGAGAATTACAGAAGTGATACTTGAGTTAGTAATAAAGATACAAAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTACAGAAGTGATACTTGAGTTAGTAATAAAGATACAAAGACAA  300

seq1  CCATATATAAAGAACCCTGTGTACCAGCTTTCTTTTCTCCTTCTATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATAAAGAACCCTGTGTACCAGCTTTCTTTTCTCCTTCTATTGAA  350

seq1  CATCTGTGAGAACAGCATTATCACTCCAAGTTGCCTTTAAGCTTGATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGAGAACAGCATTATCACTCCAAGTTGCCTTTAAGCTTGATGAG  400

seq1  CAAATAATACTTGACATAAAAATAAGTGGAACTGTGGTATTTATTATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATACTTGACATAAAAATAAGTGGAACTGTGGTATTTATTATCTG  450

seq1  GTGTCATCTTAGCTAATACCGCAGGTCCATTGAGTTCCATTATACACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATCTTAGCTAATACCGCAGGTCCATTGAGTTCCATTATACACCAC  500

seq1  GTTGTCTAGGTTCTAGAATATGTTTATGAAATAATCTGCTTGCCTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAGGTTCTAGAATATGTTTATGAAATAATCTGCTTGCCTCTGCT  550

seq1  TCCCTTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCCAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCCAGGCC  600

seq1  CAAAAAAAAAAAAAAAAAAAAAAAGGTCCCAAATACTGTCTCCTTTATTC  650
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAAAAAAAAAAAAAAAAAAAAAGGTCCCAAATACTGTCTCCTTTATTC  649

seq1  TTTAAGCATGGGAAACTTGCTCTGGCCTCATCTTTGAAAATCTGTATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCATGGGAAACTTGCTCTGGCCTCATCTTTGAAAATCTGTATCTA  699

seq1  TTTCAGACAGTCTTGCATATCACTTTTGTGCGACTAATCAATGAGGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACAGTCTTGCATATCACTTTTGTGCGACTAATCAATGAGGAGCT  749

seq1  GTAGATGCAGCGCTCTATACTTGAGAGTACTTGTCAAGCCCGGGTCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGCAGCGCTCTATACTTGAGAGTACTTGTCAAGCCCGGGTCCACT  799

seq1  CCCACAACACACAAAGAAAGA-TATTGTTATATGTGGTGTAGTGA-TAGC  848
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  CCCACAACACACAAAGAAAGATTATTGTTATATGTGGTGTAGTGATTAGC  849

seq1  CATAGTCTCCCTGAG-AATAAA-GAGGCAAGAAGGAAAG-AATCAAAAAG  895
      ||||||||||||||| |||||| |||||||||||||||| ||||||||  
seq2  CATAGTCTCCCTGAGAAATAAAGGAGGCAAGAAGGAAAGAAATCAAAAGA  899

seq1  ACCCTTAAAGAAAA-TGTT-GGGTGGAGAGGCAAAGGTTTAG-TTTATTT  942
       ||||||||||||| |||| |||||||||||||||||||||| |||||||
seq2  CCCCTTAAAGAAAATTGTTGGGGTGGAGAGGCAAAGGTTTAGTTTTATTT  949

seq1  ATTTATTC-TTTGTGAGGCTTTGGCTATTGGAAATGA-TATTTAAT-GCT  989
      |||||||| |||||||||||||||||||||||||||| |||||||| |||
seq2  ATTTATTCTTTTGTGAGGCTTTGGCTATTGGAAATGATTATTTAATGGCT  999

seq1  TTTGTTC-TGAAAAGGTAGAGTAG-CCTCTGCCTTAAAAGTACTTTACTT  1037
      ||||||| |||||||||||||||| ||||||||||  |||||| ||||||
seq2  TTTGTTCTTGAAAAGGTAGAGTAGCCCTCTGCCTT-TAAGTAC-TTACTT  1047

seq1  AATACCAAATGAATGAATATATTCTTTTTATTTATTGATTGATTTTGGTT  1087
       ||||| |||||||| |||||||||||||||||||||  ||| |||||||
seq2  -ATACC-AATGAATGGATATATTCTTTTTATTTATTGCATGAATTTGGTT  1095

seq1  TT  1089
      ||
seq2  TT  1097

seq1: chr5_123399174_123399587
seq2: B6Ng01-301H24.g_67_479 (reverse)

seq1  TGAGGTGCAGGAGCAGGAGTGGGGAGCAAAAAACACAAGTCAAGCCCAAA  50
      | ||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  TAAGGTGCAGG-GCAGGAGTGGGGAACAAAAAACACAAGTCAAGCCCAAA  49

seq1  CCACAGGAGGCGAGCGACCTACCACTGCAGAGTCACCTGACTCAACAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAGGCGAGCGACCTACCACTGCAGAGTCACCTGACTCAACAGCC  99

seq1  TTTTATGAAGGTGGCAGATGGGGAATTTCCTCCTCTATCGAAGTGGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAAGGTGGCAGATGGGGAATTTCCTCCTCTATCGAAGTGGAGTT  149

seq1  TCCCTCCTGGGGGATGCCCCCAGGATCAGGTGACAAATCTCAAGCACGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTGGGGGATGCCCCCAGGATCAGGTGACAAATCTCAAGCACGGG  199

seq1  TCACCCACCACAGACGCTCACAGACAGCACCTTGGCTTGCAGGTTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACCACAGACGCTCACAGACAGCACCTTGGCTTGCAGGTTCCCAA  249

seq1  GAGAAATGGCAACCCACAGGCCACTATCAGTTTCGACCCTTGCCCCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGCAACCCACAGGCCACTATCAGTTTCGACCCTTGCCCCACCC  299

seq1  CCCACCCACCTCCGAGGCTTCCTTTTCTGCTCCATCCGGGGCTCTGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACCTCCGAGGCTTCCTTTTCTGCTCCATCCGGGGCTCTGTGGC  349

seq1  TCTGATAGCTTCGTTTCTCCCTAGCTGCCAGCCCCCTTTGTAGCAGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAGCTTCGTTTCTCCCTAGCTGCCAGCCCCCTTTGTAGCAGCTAG  399

seq1  GCCCCCTAGAATTC  414
      ||||||||||||||
seq2  GCCCCCTAGAATTC  413