BAC Information

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BAC

Clone NameB6Ng01-302B17
Chromosome5 (Build37)
Map Location 30,849,670 - 30,984,783
singlet/doubletdoublet
Overlap geneKcnk3, 4930471M23Rik, Cenpa
Upstream geneLOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik
Downstream geneDpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302B17.bB6Ng01-302B17.g
ACCGA096245GA096246
length1,135611
definitionB6Ng01-302B17.b B6Ng01-302B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,983,637 - 30,984,783)(30,849,670 - 30,850,280)
sequence
gaattcaccactcaagtttctcaaaccctgtctaaagtcctcaacatccc
ttgatattttcatatcctttatcacccccagtccacagcaaagatggaat
ggactgggtcctcaccatggccccaggtggcagggctggccacttacagt
aggcccctcctctccaccctcagtccccagttccatctctcttcacgctg
ctcaagccactcctcttctctttctcccctgtatgaccacctaccacata
ctcatattatggccgctcccgctgtaagctggccactccgctggcaggcc
cctaggtaacatcctccatacatgctgagtggtgtggtggcaaacgggta
tcaatggctggcctgttccatggactggagggcaggtctatgggtgacat
ggcagtgtgcaggtttctgtctccctcttcccatgctgtgctgcctggat
ttgatttgatttttatgagcccttgtcataaaacagctttggccaccaag
ccaggcatcaagctaggatgaacaaaggcctgccttctgctctgcccctg
actgatagaagaacaccacctctgacaatgaagctctttgcccattgcca
gaagggctgaaggtccaattttagccgtggcttttctctgaaacatgcat
gaaatatacatccatagaattatgtagaaattcagactttattttttaat
tgaaattggtttctttacaatatttgaaaaacacttacatctcgtacatt
ttaaagcacgataaagtcctatatttataatagctttaagtatgaatcta
tcccagtgtccaatataatgaaaaaatatacatttggttatatccacaca
atggatacttttatttgtttcttggtgcctacagggaattggtatctaga
cctcctgtgggtgaagattcaagtcccttatataaagatggtggtgcacg
cctgctgcaatgtcagcagttggaagctgaagcaaggcgctcactgacta
acagagaacgcactgactagtgtgtttttaaagcagaatatttgcaagac
ccacatacactttcatacacacaacctcatctcgaactacttatgccata
acacaatgtaaaccaattgtgttgttaggagaata
gaattccctgttttctaaaattgcaaggagaaaaaaatgacaaatgtgta
gcttttgttgttatttttaaaatcaagacgcctggtataaaaccggggag
agagagagagagagagagagagagagagagagagagagagagagagaaga
caacaatagtttaaaagttgaacctgaaagtgaaggccttcagcaagtag
gcagtcactgaaccccatccaaacgtgaccccttctctgcatctgccaaa
agccgggttggttcatattcacagcagtcaatggcattcttgctccctta
ctctggtcacagaattggtgagtttaaggggtgctctgggactaaccaag
ttgtaggtctggatctctcagggaagccagggatctttaagaccataccc
tggcaggctatatccttctccatccagtctttttcagacatcctgattac
acaaggtaagataacttggcaccagcctgttgtgtctttacaccctgctg
acccttgttaacaagagagcaacaaaagcaaaagagagaactgcccagca
acccaaagctctcagctcctcatgcacctataagcgcttgacaaggagac
tggtaaagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30983637_30984783
seq2: B6Ng01-302B17.b_46_1180 (reverse)

seq1  TATTCTCCCAAACAACAACAATGGTTTACATTGTGTTAT-GCATTAAAGT  49
      |||||| || |||||||  | |||||||||||||||||| ||||  ||||
seq2  TATTCT-CCTAACAACACAATTGGTTTACATTGTGTTATGGCAT--AAGT  47

seq1  AGTGTCGAGATGAGGTTGTGTGTATGGAAAGGTGTATGTGGGTTCTTTGC  99
      ||| ||||||||||||||||||||||  || ||||||||||||   ||||
seq2  AGT-TCGAGATGAGGTTGTGTGTATG--AAAGTGTATGTGGGT--CTTGC  92

seq1  AAATATTCTGCTTTAAAAACACCACCTAGTCAGTGCGTTCTCCTGTTAGT  149
      ||||||||||||||||||||||   |||||||||||||||| ||||||||
seq2  AAATATTCTGCTTTAAAAACAC--ACTAGTCAGTGCGTTCT-CTGTTAGT  139

seq1  CAGGTGAGCGCCTTGCTTCAGCTTCCCAACTGCTGACATTGCAGCAGGCG  199
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CA-GTGAGCGCCTTGCTTCAGCTT-CCAACTGCTGACATTGCAGCAGGCG  187

seq1  TGCACCACCATCTTTATATAAGGGACTTGAATCTTCACCCACAGGAGGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACCATCTTTATATAAGGGACTTGAATCTTCACCCACAGGAGGTC  237

seq1  TAGATACCAATTCCCTGTAGGCACCAAGAAACAAATAAAAGTATCCATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACCAATTCCCTGTAGGCACCAAGAAACAAATAAAAGTATCCATTG  287

seq1  TGTGGATATAACCAAATGTATATTTTTTCATTATATTGGACACTGGGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATATAACCAAATGTATATTTTTTCATTATATTGGACACTGGGATA  337

seq1  GATTCATACTTAAAGCTATTATAAATATAGGACTTTATCCTGCTTTAAAA  399
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATTCATACTTAAAGCTATTATAAATATAGGACTTTATCGTGCTTTAAAA  387

seq1  TGTACGAGATGTAAGTGTTTTTCAAATATTGTAAAGAAACCAATTTCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGAGATGTAAGTGTTTTTCAAATATTGTAAAGAAACCAATTTCAAT  437

seq1  TAAAAAATAAAGTCTGAATTTCTACATAATTCTATGGATGTATATTTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAAAGTCTGAATTTCTACATAATTCTATGGATGTATATTTCAT  487

seq1  GCATGTTTCAGAGAAAAGCCACGGCTAAAATTGGACCTTCAGCCCTTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTCAGAGAAAAGCCACGGCTAAAATTGGACCTTCAGCCCTTCTG  537

seq1  GCAATGGGCAAAGAGCTTCATTGTCAGAGGTGGTGTTCTTCTATCAGTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGCAAAGAGCTTCATTGTCAGAGGTGGTGTTCTTCTATCAGTCA  587

seq1  GGGGCAGAGCAGAAGGCAGGCCTTTGTTCATCCTAGCTTGATGCCTGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAGCAGAAGGCAGGCCTTTGTTCATCCTAGCTTGATGCCTGGCT  637

seq1  TGGTGGCCAAAGCTGTTTTATGACAAGGGCTCATAAAAATCAAATCAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCAAAGCTGTTTTATGACAAGGGCTCATAAAAATCAAATCAAAT  687

seq1  CCAGGCAGCACAGCATGGGAAGAGGGAGACAGAAACCTGCACACTGCCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGCACAGCATGGGAAGAGGGAGACAGAAACCTGCACACTGCCAT  737

seq1  GTCACCCATAGACCTGCCCTCCAGTCCATGGAACAGGCCAGCCATTGATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCATAGACCTGCCCTCCAGTCCATGGAACAGGCCAGCCATTGATA  787

seq1  CCCGTTTGCCACCACACCACTCAGCATGTATGGAGGATGTTACCTAGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTTGCCACCACACCACTCAGCATGTATGGAGGATGTTACCTAGGGG  837

seq1  CCTGCCAGCGGAGTGGCCAGCTTACAGCGGGAGCGGCCATAATATGAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGCGGAGTGGCCAGCTTACAGCGGGAGCGGCCATAATATGAGTA  887

seq1  TGTGGTAGGTGGTCATACAGGGGAGAAAGAGAAGAGGAGTGGCTTGAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAGGTGGTCATACAGGGGAGAAAGAGAAGAGGAGTGGCTTGAGCA  937

seq1  GCGTGAAGAGAGATGGAACTGGGGACTGAGGGTGGAGAGGAGGGGCCTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAAGAGAGATGGAACTGGGGACTGAGGGTGGAGAGGAGGGGCCTAC  987

seq1  TGTAAGTGGCCAGCCCTGCCACCTGGGGCCATGGTGAGGACCCAGTCCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTGGCCAGCCCTGCCACCTGGGGCCATGGTGAGGACCCAGTCCAT  1037

seq1  TCCATCTTTGCTGTGGACTGGGGGTGATAAAGGATATGAAAATATCAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTGCTGTGGACTGGGGGTGATAAAGGATATGAAAATATCAAGG  1087

seq1  GATGTTGAGGACTTTAGACAGGGTTTGAGAAACTTGAGTGGTGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGAGGACTTTAGACAGGGTTTGAGAAACTTGAGTGGTGAATTC  1135

seq1: chr5_30849670_30850280
seq2: B6Ng01-302B17.g_66_676

seq1  GAATTCCCTGTTTTCTAAAATTGCAAGGAGAAAAAAATGACAAATGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTTTTCTAAAATTGCAAGGAGAAAAAAATGACAAATGTGTA  50

seq1  GCTTTTGTTGTTATTTTTAAAATCAAGACGCCTGGTATAAAACCGGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTTGTTATTTTTAAAATCAAGACGCCTGGTATAAAACCGGGGAG  100

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGA  150

seq1  CAACAATAGTTTAAAAGTTGAACCTGAAAGTGAAGGCCTTCAGCAAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATAGTTTAAAAGTTGAACCTGAAAGTGAAGGCCTTCAGCAAGTAG  200

seq1  GCAGTCACTGAACCCCATCCAAACGTGACCCCTTCTCTGCATCTGCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCACTGAACCCCATCCAAACGTGACCCCTTCTCTGCATCTGCCAAA  250

seq1  AGCCGGGTTGGTTCATATTCACAGCAGTCAATGGCATTCTTGCTCCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGTTGGTTCATATTCACAGCAGTCAATGGCATTCTTGCTCCCTTA  300

seq1  CTCTGGTCACAGAATTGGTGAGTTTAAGGGGTGCTCTGGGACTAACCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCACAGAATTGGTGAGTTTAAGGGGTGCTCTGGGACTAACCAAG  350

seq1  TTGTAGGTCTGGATCTCTCAGGGAAGCCAGGGATCTTTAAGACCATACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGTCTGGATCTCTCAGGGAAGCCAGGGATCTTTAAGACCATACCC  400

seq1  TGGCAGGCTATATCCTTCTCCATCCAGTCTTTTTCAGACATCCTGATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGCTATATCCTTCTCCATCCAGTCTTTTTCAGACATCCTGATTAC  450

seq1  ACAAGGTAAGATAACTTGGCACCAGCCTGTTGTGTCTTTACACCCTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTAAGATAACTTGGCACCAGCCTGTTGTGTCTTTACACCCTGCTG  500

seq1  ACCCTTGCTAACAAGAGAGCAACAAAAGCAAAAGAGAGAACTGCCCAGCA  550
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGTTAACAAGAGAGCAACAAAAGCAAAAGAGAGAACTGCCCAGCA  550

seq1  ACCCAAAGCTCTCAGCTCCTCATGCACCTATAAGCGCTTGACAAGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGCTCTCAGCTCCTCATGCACCTATAAGCGCTTGACAAGGAGAC  600

seq1  TGGTAAAGAAC  611
      |||||||||||
seq2  TGGTAAAGAAC  611