BAC Information

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BAC

Clone NameB6Ng01-302E21
Chromosome5 (Build37)
Map Location 137,147,944 - 137,336,300
singlet/doubletdoublet
Overlap geneMylc2pl, Emid2
Upstream genePor, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
Downstream geneLOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302E21.bB6Ng01-302E21.g
ACCGA096387GA096388
length3321,109
definitionB6Ng01-302E21.b B6Ng01-302E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,147,944 - 137,148,281)(137,334,873 - 137,336,300)
sequence
actcctcagtctggcttcctgattagaacacctagttccctgcagccatc
cacccattgttcagcaatctgggacagagatcacagcccagggacatcct
cttctttggtagatgtttgcaataacagctcagtcctcctaaactctgtc
actttataggaaaatggcgttagtgtctcgcactgtgttacaacccactg
ccctaaagccagctcacctctctgttatctctgtattggtgtgaggactt
tgagaacttggggaaatgtattcgtgagaattgagcagataagaggctgg
ggagagggagggtatgggggacttttgggata
gaattccatgttcagtgagagaccctttcttgaaaaataatgtggaaagt
gagaggtagacattttgaaatcaatcattggtctctatacactcacacag
gggagggcacccacatacacctacatatttactgtcccttctccaattaa
gaaaaaagccacatgagttattcaccctctctgtgtcctgaaagcagctc
agttacctccctgactgttatcactccccagagtggcttcagcatgctca
gagggactccatagggagctgtgtggactttcttgatccaggaacccttg
ttgatcagttgacaaaccaagtaggggagtaggtatctctcactgaggca
gggtggtaaggggaatggcgctttttctggaagagtctttatgggctgga
agtctggatgtgggtccagcttagcctgagtgggggcggttagggtcctg
tgttggggagctggggaccagaacttggggatctgcccactagaagtgac
agttggaaggaagagacacaggaacactcttccagttgacaccacctgac
tggaagttatcacaaagtccctgtggacctagagatgatccccactgtgt
cagatatttgagggtaatccctgtatgatgaaccctgcggacagtggaaa
cctgtccccagaaaactatttgcttggctgctttggctttcaccagcaag
gcttctgggagagatgtcacagagttccagccttcatttgcacatcaatg
tgatggactctgaaacttctcctagcttcaagggctgttcttcctgccct
gtgggctacaggaaagatgagaaggagcccagagaggaatagtcacacag
tgattcccttcatcccccgcaggaccccaacacaatgaatccccggcaga
ccccaccacaatgaatccccggcaggaccccaacacaatgatccaaggca
ggaccccaacacgttgattccagggcaggacctacacagtgatcccagca
gacccacacagtgatccccggcaggaccccacacatgaattcccggcaga
cctcaacacagtgattcctgcaggaaccttacacagtgaattccaggcag
gaaccccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_137147944_137148281
seq2: B6Ng01-302E21.b_46_383

seq1  GAATTCACTCCTCAGTCTGGCTTCCTGATTAGAACACCTAGTTCCCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTCAGTCTGGCTTCCTGATTAGAACACCTAGTTCCCTGCA  50

seq1  GCCATCCACCCATTGTTCAGCAATCTGGGACAGAGATCACAGCCCAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCACCCATTGTTCAGCAATCTGGGACAGAGATCACAGCCCAGGGA  100

seq1  CATCCTCTTCTTTGGTAGATGTTTGCAATAACAGCTCAGTCCTCCTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTTCTTTGGTAGATGTTTGCAATAACAGCTCAGTCCTCCTAAAC  150

seq1  TCTGTCACTTTATAGGAAAATGGCGTTAGTGTCTCGCACTGTGTTACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACTTTATAGGAAAATGGCGTTAGTGTCTCGCACTGTGTTACAAC  200

seq1  CCACTGCCCTAAAGCCAGCTCACCTCTCTGTTATCTCTGTATTGGTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCCTAAAGCCAGCTCACCTCTCTGTTATCTCTGTATTGGTGTGA  250

seq1  GGACTTTGAGAACTTGGGGAAATGTATTCGTGAGAATTGAGCAGATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGAGAACTTGGGGAAATGTATTCGTGAGAATTGAGCAGATAAGA  300

seq1  GGCTGGGGAGAGGGAGGGTATGGGGGACTTTTGGGATA  338
      ||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGAGAGGGAGGGTATGGGGGACTTTTGGGATA  338

seq1: chr5_137334873_137336300
seq2: B6Ng01-302E21.g_71_1179 (reverse)

seq1  TTGGGATCCTGCCGGGGATTCACTGTGTTGGGGTACTGCCGGGGATCACC  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTTGGGGTCCTGCCGGGAATCACCGTGTTAGGGTCCTGCCGGGGATCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCGTGTTGGGGTCCTGCCGGGGATCACCGTGTTGGGGTCCTGCCGGGGAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CACCGTGTTGGGGTCCTGCCGGGGATCACCGTGTTGGGGTCCTGCCGGGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATCACCGTGTTGGGGTCCTGCCGGGGATCACCGTGTTGGGGTCCTGCCGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGATCACCGTGTTGGGGTCCTGCCGGGGATCACTGTGTTGAGGCCCTGCC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGATCACTGTGTTGGGG-TCCTGCCTGGGA-TCACTGTGTTAGGGTCC  348
                   |||||| |||||||||| | ||||||||| ||| |||
seq2  -------------TTGGGGTTCCTGCCTGGAATTCACTGTGTAAGGTTCC  37

seq1  TGCCGGGGATCACTGTGTTGGGGTCCTGCCGGGGATTCATTGTGTTGGGG  398
      || | || |||||||||||| ||| |||||||| ||||| |||| |||||
seq2  TG-CAGGAATCACTGTGTTGAGGT-CTGCCGGGAATTCA-TGTG-TGGGG  83

seq1  TCCTGCCGGGGATCACTGTGTTGGGGTCCTGCCTGGGATCACTGTGTTAG  448
      |||||||||||||||||||||  |||| ||| |||||||||||||||   
seq2  TCCTGCCGGGGATCACTGTGT--GGGT-CTG-CTGGGATCACTGTGT--A  127

seq1  GGTCCTGCCTGGGAATCACCGTGTTGGGGTCCTGCCTGGGATCATTGTGT  498
      |||||||||  ||||||| |||||||||||||||||| ||||||||||||
seq2  GGTCCTGCCCTGGAATCAACGTGTTGGGGTCCTGCCTTGGATCATTGTGT  177

seq1  TGGGGTCCTGCCGGGGATTCATTGTGTTGGGGTCCTGCCGGGGATTCATT  548
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  TGGGGTCCTGCCGGGGATTCATTGTGGTGGGGT-CTGCCGGGGATTCATT  226

seq1  GTGTTGGGGTCCTGC-GGGGATGAAGGGAATCACTGTGTGACTATTCCTC  597
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGGTCCTGCGGGGGATGAAGGGAATCACTGTGTGACTATTCCTC  276

seq1  TCTGGGCTCCTTCTCATC-TTCCTGTAGCCCACAGGGCAGGAAGAACAG-  645
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TCTGGGCTCCTTCTCATCTTTCCTGTAGCCCACAGGGCAGGAAGAACAGC  326

seq1  CCTTGAAGCTAGGAGAAGTTTCAGAGTCCATCACATTGATGTGCAAATGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGCTAGGAGAAGTTTCAGAGTCCATCACATTGATGTGCAAATGA  376

seq1  AGGCTGGAACTCTGTGACATCTCTCCCAGAAGCCTTGCTGGTGAAAGCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGAACTCTGTGACATCTCTCCCAGAAGCCTTGCTGGTGAAAGCCA  426

seq1  AAGCAGCCAAGCAAATAGTTTTCTGGGGACAGGTTTCCACTGTCCGCAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCAAGCAAATAGTTTTCTGGGGACAGGTTTCCACTGTCCGCAGG  476

seq1  GTTCATCATACAGGGATTACCCTCAAATATCTGACACAGTGGGGATCATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCATACAGGGATTACCCTCAAATATCTGACACAGTGGGGATCATC  526

seq1  TCTAGGTCCACAGGGACTTTGTGATAACTTCCAGTCAGGTGGTGTCAACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTCCACAGGGACTTTGTGATAACTTCCAGTCAGGTGGTGTCAACT  576

seq1  GGAAGAGTGTTCCTGTGTCTCTTCCTTCCAACTGTCACTTCTAGTGGGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTGTTCCTGTGTCTCTTCCTTCCAACTGTCACTTCTAGTGGGCA  626

seq1  GATCCCCAAGTTCTGGTCCCCAGCTCCCCAACACAGGACCCTAACCGCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCAAGTTCTGGTCCCCAGCTCCCCAACACAGGACCCTAACCGCCC  676

seq1  CCACTCAGGCTAAGCTGGACCCACATCCAGACTTCCAGCCCATAAAGACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGGCTAAGCTGGACCCACATCCAGACTTCCAGCCCATAAAGACT  726

seq1  CTTCCAGAAAAAGCGCCATTCCCCTTACCACCCTGCCTCAGTGAGAGATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAAAAAGCGCCATTCCCCTTACCACCCTGCCTCAGTGAGAGATA  776

seq1  CCTACTCCCCTACTTGGTTTGTCAACTGATCAACAAGGGTTCCTGGATCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCCCTACTTGGTTTGTCAACTGATCAACAAGGGTTCCTGGATCA  826

seq1  AGAAAGTCCACACAGCTCCCTATGGAGTCCCTCTGAGCATGCTGAAGCCA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCCACACAGCTCCCTATGGAGTCCCTCTGAGCATGCTGAAGCCA  876

seq1  CTCTGGGGAGTGATAACAGTCAGGGAGGTAACTGAGCTGCTTTCAGGACA  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGAGTGATAACAGTCAGGGAGGTAACTGAGCTGCTTTCAGGACA  926

seq1  CAGAGAGGGTGAATAACTCATGTGGCTTTTTTCTTAATTGGAGAAGGGAC  1295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGTGAATAACTCATGTGGCTTTTTTCTTAATTGGAGAAGGGAC  976

seq1  AGTAAATATGTAGGTGTATGTGGGTGCCCTCCCCTGTGTGAGTGTATAGA  1345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATATGTAGGTGTATGTGGGTGCCCTCCCCTGTGTGAGTGTATAGA  1026

seq1  GACCAATGATTGATTTCAAAATGTCTACCTCTCACTTTCCACATTATTTT  1395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGATTGATTTCAAAATGTCTACCTCTCACTTTCCACATTATTTT  1076

seq1  TCAAGAAAGGGTCTCTCACTGAACATGGAATTC  1428
      |||||||||||||||||||||||||||||||||
seq2  TCAAGAAAGGGTCTCTCACTGAACATGGAATTC  1109