BAC Information

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BAC

Clone NameB6Ng01-302I08
Chromosome5 (Build37)
Map Location 78,212,588 - 78,213,687
singlet/doubletsinglet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302I08.bB6Ng01-302I08.g
ACCGA096547GA096548
length1,1871,107
definitionB6Ng01-302I08.b B6Ng01-302I08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttatgctccaagatcaagaattgacaaatgggacttcataaa
attgcaaagcttctataaggcaaaggacactgtcaataggacagaatggc
aaccaacagattgggaaaagttctttaccaatgctacatctgatagaggg
ctaatatccaagatatacaaagaactcaagaacttagactccagagaacc
aaataaccctattaaacactggggtacagagctaaacaaagaattctcaa
ctgaggaatactgaatggctgggaagcacctaaagaaatgttcaacatcc
ttagtcatcagggaaatgcaaatcaaaacaaccctgagattctacctcac
accagtcagaatggctaagatcaaaaactcaggtgacagcaaaagatggc
aaggatgtggagaaaagggaacactcctgcattgctggtgagattgcaag
ctggtacaaccactatggaaatcagtttggcagttcctcagaaaattgga
catagtactacctgaggacccagcaataccactcctgagcatatacccaa
aagatgttccaacatgtaacaaggacacatgctccactatgttcatagca
gccttatttataatagccagaagctggaaagaacccagatgtccctcaac
cgaggaatggatacagacaatttggtacatttgcacagtggagtactact
tggatactaaaaacaatgaatttatgaaatttttaggcaaaaggatggat
caagaaaataccatcctgaggtaacccagtcacaaaataacacacatatt
ctgcactcactgataagtggatattagcccagacgctcagaataaccaag
atacaattcacagaccacatgaagctcaagaagaaaggaagaccaaagtg
tggatactttggttccttcttagaagagggatcaaaatacccatgggagg
agatacagagacaaagtggtggagcagagactgaaaggaaaggccatccg
gagactgcccccacctggggatcatcccatatacagtcaccaaaccagat
actatttggtggagtaccaccagtgctggctggacggacgcctgaatata
gctgtctcctgaaagctctggccaatgcctgacaatacgaggcagatgcc
tcttcaagctacccaattggacctatgaggcaccatg
gaattcattggatacaatgggaatagggtagagagagtattgtttcctca
gagagcagagtactaacctatgggcagacttcttgagtataagaatttcc
aaacaacttgagtgagtatcactagaaggtgaaccttagagaggagacaa
atgtttacacatggatgttggaatctggcctggtggccatactcttcaat
agcccatctcctccatttccacactaacagaacaataagaatgctttggt
gaaagaggaaagattgtctccaagatcactgctactcccattaaagaact
cttattatctataatacaacatgtgacctcaaatcaggataatgggcata
gaacaaagtccacaagaacctcagtctttactaaatactggacccagtgg
cttctgggatggggcacacagaaatgtaggttgcatagaaaatggcagtg
gcagtgtttgctccaaagtgctaagatgagttttcctcagaggcactgcc
tgtaagctgtatgactccatggcaacatttacaagacagaaatgtgatca
cagacaattctgctgcccttgatggtaacacgctggcagtgattggagca
ggacttgccaagcacacattgaccctctgagtcacagtggttcctatgga
gattaacaccatcagctgtggggacagcagcccagaatttcgattggtgt
tagacagaaagaagaaaaatggtatcatggtactctagaaaagcagcaat
tgggatgaaaaaagagggtggggtggcatagctcagagagaaaatgcttt
gtaattgcatagcaaccgattcctctagctcttcttgcaaatggctgggc
agaaagcatgcttcctgggtagataggctacatctacttttatttatttg
tttatttccctgcaaactttcttctcatccatgatagctttatcctccac
aacagagtgaggtctggggccaacagaagtccctacttctggcactgtag
agttgatttaatacacctgggccttagagttgaagaattactgaatcact
aatcttggtgggatttaaatgtccttctgtataacaaaaaaccctcttaa
aaccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78212588_78213687
seq2: B6Ng01-302I08.g_69_1175

seq1  GAATTCATTGGATACAATGGGAATAGGGTAGAGAGAGTATTGTTTCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGATACAATGGGAATAGGGTAGAGAGAGTATTGTTTCCTCA  50

seq1  GAGAGCAGAGTACTAACCTATGGGCAGACTTCTTGAGTATAAGAATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGAGTACTAACCTATGGGCAGACTTCTTGAGTATAAGAATTTCC  100

seq1  AAACAACTTGAGTGAGTATCACTAGAAGGTGAACCTTAGAGAGGAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTTGAGTGAGTATCACTAGAAGGTGAACCTTAGAGAGGAGACAA  150

seq1  ATGTTTACACATGGATGTTGGAATCTGGCCTGGTGGCCATACTCTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACACATGGATGTTGGAATCTGGCCTGGTGGCCATACTCTTCAAT  200

seq1  AGCCCATCTCCTCCATTTCCACACTAACAGAACAATAAGAATGCTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCTCCTCCATTTCCACACTAACAGAACAATAAGAATGCTTTGGT  250

seq1  GAAAGAGGAAAGATTGTCTCCAAGATCACTGCTACTCCCATTAAAGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGAAAGATTGTCTCCAAGATCACTGCTACTCCCATTAAAGAACT  300

seq1  CTTATTATCTATAATACAACATGTGACCTCAAATCAGGATAATGGGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATCTATAATACAACATGTGACCTCAAATCAGGATAATGGGCATA  350

seq1  GAACAAAGTCCACAAGAACCTCAGTCTTTACTAAATACTGGACCCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGTCCACAAGAACCTCAGTCTTTACTAAATACTGGACCCAGTGG  400

seq1  CTTCTGGGATGGGGCACACAGAAATGTAGGTTGCATAGAAAATGGCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGATGGGGCACACAGAAATGTAGGTTGCATAGAAAATGGCAGTG  450

seq1  GCAGTGTTTGCTCCAAAGTGCTAAGATGAGTTTTCCTCAGAGGCACTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTTGCTCCAAAGTGCTAAGATGAGTTTTCCTCAGAGGCACTGCC  500

seq1  TGTAAGCTGTATGACTCCATGGCAACATTTACAAGACAGAAATGTGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCTGTATGACTCCATGGCAACATTTACAAGACAGAAATGTGATCA  550

seq1  CAGACAATTCTGCTGCCCTTGATGGTAACACGCTGGCAGTGATTGGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAATTCTGCTGCCCTTGATGGTAACACGCTGGCAGTGATTGGAGCA  600

seq1  GGACTTGCCAAGCACACATTGACCCTCTGAGTCACAGTGGTTCCTATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCCAAGCACACATTGACCCTCTGAGTCACAGTGGTTCCTATGGA  650

seq1  GATTAACACCATCAGCTGTGGGGACAGCAGCCCAGAATTTCGATTGGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACACCATCAGCTGTGGGGACAGCAGCCCAGAATTTCGATTGGTGT  700

seq1  TAGACAGAAAGAAGAAAAATGGTATCATGGTACTCTAGAAAAGCAGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAAAGAAGAAAAATGGTATCATGGTACTCTAGAAAAGCAGCAAT  750

seq1  TGGGATGAAAAAAGAGGGTGGGGTGGCATAGCTCAGGAGAGAAAATGCTT  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGATGAAAAAAGAGGGTGGGGTGGCATAGCTCA-GAGAGAAAATGCTT  799

seq1  TGTAATTGCATAGCAACCGATTCCTCTAGCTCTTCTTGCAAATGGCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTGCATAGCAACCGATTCCTCTAGCTCTTCTTGCAAATGGCTGGG  849

seq1  CAGAAAGCATGCTTCCT-GGTAGATAGGCTACAATCTACTTTTATTTATT  899
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  CAGAAAGCATGCTTCCTGGGTAGATAGGCTAC-ATCTACTTTTATTTATT  898

seq1  TGTTTATTT-CCTGCAAACTTTCTTCTCATCCATGATAGC-TTAT-CTCC  946
      ||||||||| |||||||||||||||||||||||||||||| |||| ||||
seq2  TGTTTATTTCCCTGCAAACTTTCTTCTCATCCATGATAGCTTTATCCTCC  948

seq1  ACAACAGAGTGA-GTCTGGGGCC-ACAG-AGTCCCTAC-TCTGGCACTGT  992
      |||||||||||| |||||||||| |||| ||||||||| |||||||||||
seq2  ACAACAGAGTGAGGTCTGGGGCCAACAGAAGTCCCTACTTCTGGCACTGT  998

seq1  AAGAG-TGA-TTAATACA-CTGGGCCTTAGGAGTTGGAAGAA-TACTG-A  1037
       |||| ||| |||||||| |||||||||| ||||| |||||| ||||| |
seq2  -AGAGTTGATTTAATACACCTGGGCCTTA-GAGTT-GAAGAATTACTGAA  1045

seq1  TCACTTATCCTGGTGGG-TTTAAATGTCCTTTCTGTATTACCAAAAAAAC  1086
      ||||| ||| ||||||| ||||||||||| ||||||| || ||||||| |
seq2  TCACTAATCTTGGTGGGATTTAAATGTCC-TTCTGTA-TAACAAAAAACC  1093

seq1  CTCTAAAAAACAAA  1100
      |||| |||| ||||
seq2  CTCTTAAAACCAAA  1107