BAC Information

Click to search

BAC

Clone NameB6Ng01-303G15
Chromosome5 (Build37)
Map Location 104,076,472 - 104,077,637
singlet/doubletsinglet
Overlap gene1700016H13Rik
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6
Downstream geneAff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303G15.bB6Ng01-303G15.g
ACCGA097220GA097221
length1,2041,143
definitionB6Ng01-303G15.b B6Ng01-303G15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgggcagtggtagcacacagctttaatccaagcaatcaggag
acagaaggaggtggctctgtgagttcaaggtcagcctggcatacaaaaca
agttccaggccaggcagagctacacagagcaacactgtctcaaaaacaaa
acaaaacaaaaaaacagaaaaacaacgaaacaaaacaacaggaacaaaaa
aacaaaccaaatataaactgacttgctatcatactaagacaggaatgctg
tcttagttagtgtccttatggctgtgattaaaacaacaagatcaaaggca
gcttagagtgaaaagggtcacatcactcaaggaagtcaaggcaggagctc
aaggcaggaactggagcagagcagagaccatagaagagcacaccttactg
accgtgctcctcacagcttgctccacgtgccttcttatggcaccaggacc
accagcccacaggtggcatgctggcagtgagctgggtcctcccacatcaa
ttagcagtcaaaaaaatgactacagtccgtcccccacccccacccctacc
caccccccaggtccagtttggcagggcaattttttcaatggaagctccct
cttctaaagtggctctcgcctgtgttgagttgagatgaaactggcctgca
ggctacactctgcaatggaggttgtgctcatctgatagccacagaggcca
cattattattcacaggagcattccattaaccagagaactgtcagcccagt
ctcccagcatcagacagctgagtgagtcaggtttcatgctataggaaacc
actgatgggctaaatactttatccttaaatacagttccaagagttgtagt
caacctaaccatgtgtcagctaggtgtggtggcacactaatttaacccaa
cagaggcggtggatctgagttagaggccagcccggtctacaagtgagttc
taggacagccagagaaactcttgtcttgaaaaacaagacataagggatgg
agagactcagtagtcaggacacctgagtgatcttaacaaaggttcttgga
gttatttccagccaccacaatgggtgtctcacacaacaatcagatactgg
aattccgatgccctcaatctggtatgtctgaagaaacacaacgttatctc
gatgacttagaacgagtgatattaatcttgttaaaacaaaatggtagtca
cacg
gaattccaggccagtccacagtgaatcacaacagccagagccactgtgtg
tgtcctggaaatcacgccagggtcatatgcaagaacaacaagtgttctta
acctctaagaggtctctccagcccttgagattggctctcaaaagagtggt
agtttggatggatacaaggtaagaggttactaaaaaaaaagaagtaaaca
gaacaactcattccggcatcagggacttgctcttttttttttttcaaaat
gcctacctaagtttcaacagaagttataagacatgcgaagcccaaggctg
ttgttcatcgaaatactgctataccgtggtgccttttatgaatccagggg
aggagaagatcctgagatgcctgtcgaatgtattttaagaaacagtgctt
aaaagccgggcgtggtggctttaatcccagcactcgggaggcagaggcag
gtggatttctgagttcgaggccagcctggtctacagagtgagttccagga
cagccagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaa
aaaaaaaaaaaaagaaatagtgcttaaataaaacactaatatccaaatat
gctttattggattcaaattctagaaaactttgttcatacaaactcagttc
ttcctctttatttgctcattccccagccactctgcaagtataagttttcc
tcacagttaggccgtctttgtccctccgtgtccccttcacgcatgtgtgc
cacacctgctccaggtccattgtagaaaaaatgttagccagaaggaaagc
agcttcacgattttttccaggagaacaaagacaaagtaagtcttatttta
aagtactacgtgaattaaaaaaaaaaaaaaaaatttaaaagtaaagtgcc
acgtgagatgataaacgacactttaccgaaaatggtaactgtagcgttta
cagaatgaaatctagcagaaaaaaaatgcagttcctcattgtaaagactt
ctttctgacttcatttggagaatctctggatctaaatgtctctccgacgc
tgcctctcaagaactgtcctcttccgcacgcaatcttataagccattgaa
cgtaacaagtgactcactcgatgtgtttttcactcacttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104076472_104077637
seq2: B6Ng01-303G15.g_65_1207

seq1  GAATTCCAGGCCAGTCCACAGTGAATCACAACAGCCAGAGCCACTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGTCCACAGTGAATCACAACAGCCAGAGCCACTGTGTG  50

seq1  TGTCCTGGAAATCACGCCAGGGTCATATGCAAGAACAACAAGTGTTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAAATCACGCCAGGGTCATATGCAAGAACAACAAGTGTTCTTA  100

seq1  ACCTCTAAGAGGTCTCTCCAGCCCTTGAGATTGGCTCTCAAAAGAGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAAGAGGTCTCTCCAGCCCTTGAGATTGGCTCTCAAAAGAGTGGT  150

seq1  AGTTTGGATGGATACAAGGTAAGAGGTTACTAAAAAAAAAGAAGTAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGATGGATACAAGGTAAGAGGTTACTAAAAAAAAAGAAGTAAACA  200

seq1  GAACAACTCATTCCGGCATCAGGGACTTGCTCTTTTTTTTTTTTCAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTCATTCCGGCATCAGGGACTTGCTCTTTTTTTTTTTTCAAAAT  250

seq1  GCCTACCTAAGTTTCAACAGAAGTTATAAGACATGCGAAGCCCAAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCTAAGTTTCAACAGAAGTTATAAGACATGCGAAGCCCAAGGCTG  300

seq1  TTGTTCATCGAAATACTGCTATACCGTGGTGCCTTTTATGAATCCAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATCGAAATACTGCTATACCGTGGTGCCTTTTATGAATCCAGGGG  350

seq1  AGGAGAAGATCCTGAGATGCCTGTCGAATGTATTTTAAGAAACAGTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGATCCTGAGATGCCTGTCGAATGTATTTTAAGAAACAGTGCTT  400

seq1  AAAAGCCGGGCGTGGTGGCTTTAATCCCAGCACTCGGGAGGCAGAGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCGGGCGTGGTGGCTTTAATCCCAGCACTCGGGAGGCAGAGGCAG  450

seq1  GTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA  500

seq1  CAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAA  550

seq1  AAAAAAAAAAAAAGAAATAGTGCTTAAATAAAACACTAATATCCAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAATAGTGCTTAAATAAAACACTAATATCCAAATAT  600

seq1  GCTTTATTGGATTCAAATTCTAGAAAACTTTGTTCATACAAACTCAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTGGATTCAAATTCTAGAAAACTTTGTTCATACAAACTCAGTTC  650

seq1  TTCCTCTTTATTTGCTCATTCCCCAGCCACTCTGCAAGTATAAGTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTATTTGCTCATTCCCCAGCCACTCTGCAAGTATAAGTTTTCC  700

seq1  TCACAGTTAGGCCGTCTTTGTCCCTCCGTGTCCCCTTCACGCATGTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTAGGCCGTCTTTGTCCCTCCGTGTCCCCTTCACGCATGTGTGC  750

seq1  CACACCTGCTCCAGGTCCATTGTAGAAAAAATGTTAGCCAGAAGGAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGCTCCAGGTCCATTGTAGAAAAAATGTTAGCCAGAAGGAAAGC  800

seq1  AGCTTCACGATTTTTTCCAGGAGAACAAAGACAAAGTAAGTCTTATTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCACGATTTTTTCCAGGAGAACAAAGACAAAGTAAGTCTTATTTTA  850

seq1  AAGTACTACGTGAATTAAAAAAAAAAAAAAA---TTAAAAGTAAAGTGCC  897
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  AAGTACTACGTGAATTAAAAAAAAAAAAAAAAATTTAAAAGTAAAGTGCC  900

seq1  ACGTGAGAATGATAAACGACACTTTACCGAAAATTGGTAACTGTAGCGTT  947
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  ACGTGAG-ATGATAAACGACACTTTACCGAAAA-TGGTAACTGTAGCGTT  948

seq1  AACAGAAATGAAATCTTAAGCAGAAAAAAAAAATGCAGTTTCTCATTGTA  997
       |||| ||||||||||  |||||  ||||||||||||||| |||||||||
seq2  TACAG-AATGAAATCT--AGCAG--AAAAAAAATGCAGTTCCTCATTGTA  993

seq1  AAAGAACTTCTTTCTGACCTTCATTTTGAGAAATCTCCTTGGGATCTTAA  1047
      ||   |||||||||||| |||||||| ||| ||||||    ||||| |||
seq2  AA--GACTTCTTTCTGA-CTTCATTTGGAG-AATCTC---TGGATC-TAA  1035

seq1  ATGTCTCTTCAGAACGCTGCCTCTCACAAGAACTGTCCTCTTCCGCACGC  1097
      |||||||| |   |||||||||||  ||||||||||||||||||||||||
seq2  ATGTCTCTCC--GACGCTGCCTCT--CAAGAACTGTCCTCTTCCGCACGC  1081

seq1  AATCTTATAAG-CATTGAAACACGTAACACAAAATGACTCAACTCCAGAT  1146
      ||||||||||| ||||||   |||||||   || |||||| ||||  |||
seq2  AATCTTATAAGCCATTGA---ACGTAAC---AAGTGACTC-ACTC--GAT  1122

seq1  GTG-TTTTCATCTACTTACAG  1166
      ||| ||||||   ||||||||
seq2  GTGTTTTTCACTCACTTACAG  1143