BAC Information

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BAC

Clone NameB6Ng01-303H22
Chromosome5 (Build37)
Map Location 109,427,949 - 109,429,119
singlet/doubletsinglet
Overlap geneV2r16
Upstream geneLOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615
Downstream geneLOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303H22.b
ACCGA097282
length1,166
definitionB6Ng01-303H22.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttgctctgtaccccattttttaatgaggttatttgaatt
tctggagtccagcttctagagctctttgtatatattgaatattcaccacc
tatcagatttaggattggtaaaaatcctttcccaatctgttggtggcctt
tttatcttattgacagtattcattatatttagatatatcaatgagatctt
gtaaatgtacccagagaaacaactgtacatttgttagatattattctgtc
agaggaaagatttcttcactgcaaatctccctaatgaatcttttacatgg
ataaatatcatgcacaaggatcacatttggtaggagacaatacatttttt
atgatatcagggagttttctgaaaatgtgtctcaacatttcaccaaataa
gttcaaaaattaaaatataagccaagagttttattataaaacccttaagt
gatgagtcgactagaataatttcctaaagaataattttgcaagaattggt
acatgggctatgattaataattattcatttctattaacaattatttacaa
aaccataaatgattaagacttcacattttattaagtttatgtttatctca
tgtatatagactgtatgtacatgaaaggcccacaaccattcttttcacaa
cttacagacattcagacttccccttctattgcacatagatgacatcatgt
ttttaaaactaccatttttgaggaaaatgctcatacatgcacagtgttac
ttgttatctgttaatcatttcttcttgcacattttaccatggaacattaa
tatgaagtattttaattttaaatcatccatgaggcatattgcattttact
acaaggaattgtttatttcacctgtcttttctgaaattcataaataaatt
atgggaaatactcaatttcccattcccttttattgatgtgtaacatctaa
tggtgcatctcaattagtgtcttccatgctgaagtccaggatatttacta
accctgttggagactggtgaacatgagcatagggaaatcagtgtacagag
tatgatatttttcatcattgggatttccacagccttggataaagtgaaaa
atagcaggctaatttgctgctcaacgagctacaaccttcatatatctctg
gaagaatattttggag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109427949_109429119
seq2: B6Ng01-303H22.b_43_1208 (reverse)

seq1  CTCCAAA----TCTTC---AGATATATGAAGTTGTTGGCTCTGTTGGAAA  43
      |||||||    |||||   |||||||||||| |  | |||| ||||  | 
seq2  CTCCAAAATATTCTTCCAGAGATATATGAAGGTTGTAGCTC-GTTG--AG  47

seq1  CAAGGCAAA-TAGCTTCCTA-TTTTCACTTTTAATCCAAGGCCTTGTGGA  91
      ||  ||||| |||| | ||| ||||||||||  |||||||||  ||||||
seq2  CA--GCAAATTAGCCTGCTATTTTTCACTTT--ATCCAAGGC--TGTGGA  91

seq1  AAATTCCAAATGATG-AAAATATCATACTCTGTACACTGATTTTCCCTAT  140
      ||  ||| ||||||| |||||||||||||||||||||||| |||||||||
seq2  AA--TCCCAATGATGAAAAATATCATACTCTGTACACTGA-TTTCCCTAT  138

seq1  GCTTCATGTTCACCAGTTCTCCAACAGGGTTAGTAAATATCCTGGACTTC  190
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GC-TCATGTTCACCAG-TCTCCAACAGGGTTAGTAAATATCCTGGACTTC  186

seq1  AGCATGGAAGACACCTAATTGAGATGCACCATTAGATGTTTACACATCAA  240
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  AGCATGGAAGACA-CTAATTGAGATGCACCATTAGATG-TTACACATCAA  234

seq1  T-AAAGGGAATGGGAAATTGAGTATTTCCCATAATTTATTTATGAATTTC  289
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGAATGGGAAATTGAGTATTTCCCATAATTTATTTATGAATTTC  284

seq1  AGAAAAGACAGGTGAAATAAACAATTCCTTGTAGTAAAATGCAATATGCC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGACAGGTGAAATAAACAATTCCTTGTAGTAAAATGCAATATGCC  334

seq1  TCATGGATGATTTAAAATTAAAATACTTCATATTAATGTTCCATGGTAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATGATTTAAAATTAAAATACTTCATATTAATGTTCCATGGTAAA  384

seq1  ATGTGCAAGAAGAAATGATTAACAGATAACAAGTAACACTGTGCATGTAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAGAAGAAATGATTAACAGATAACAAGTAACACTGTGCATGTAT  434

seq1  GAGCATTTTCCTCAAAAATGGTAGTTTTAAAAACATGATGTCATCTATGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTTCCTCAAAAATGGTAGTTTTAAAAACATGATGTCATCTATGT  484

seq1  GCAATAGAAGGGGAAGTCTGAATGTCTGTAAGTTGTGAAAAGAATGGTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGAAGGGGAAGTCTGAATGTCTGTAAGTTGTGAAAAGAATGGTTG  534

seq1  TGGGCCTTTCATGTACATACAGTCTATATACATGAGATAAACATAAACTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTTCATGTACATACAGTCTATATACATGAGATAAACATAAACTT  584

seq1  AATAAAATGTGAAGTCTTAATCATTTATGGTTTTGTAAATAATTGTTAAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGTGAAGTCTTAATCATTTATGGTTTTGTAAATAATTGTTAAT  634

seq1  AGAAATGAATAATTATTAATCATAGCCCATGTACCAATTCTTGCAAAATT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAATAATTATTAATCATAGCCCATGTACCAATTCTTGCAAAATT  684

seq1  ATTCTTTAGGAAATTATTCTAGTCGACTCATCACTTAAGGGTTTTATAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAGGAAATTATTCTAGTCGACTCATCACTTAAGGGTTTTATAAT  734

seq1  AAAACTCTTGGCTTATATTTTAATTTTTGAACTTATTTGGTGAAATGTTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTGGCTTATATTTTAATTTTTGAACTTATTTGGTGAAATGTTG  784

seq1  AGACACATTTTCAGAAAACTCCCTGATATCATAAAAAATGTATTGTCTCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATTTTCAGAAAACTCCCTGATATCATAAAAAATGTATTGTCTCC  834

seq1  TACCAAATGTGATCCTTGTGCATGATATTTATCCATGTAAAAGATTCATT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAATGTGATCCTTGTGCATGATATTTATCCATGTAAAAGATTCATT  884

seq1  AGGGAGATTTGCAGTGAAGAAATCTTTCCTCTGACAGAATAATATCTAAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATTTGCAGTGAAGAAATCTTTCCTCTGACAGAATAATATCTAAC  934

seq1  AAATGTACAGTTGTTTCTCTGGGTACATTTACAAGATCTCATTGATATAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACAGTTGTTTCTCTGGGTACATTTACAAGATCTCATTGATATAT  984

seq1  CTAAATATAATGAATACTGTCAATAAGATAAAAAGGCCACCAACAGATTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATAATGAATACTGTCAATAAGATAAAAAGGCCACCAACAGATTG  1034

seq1  GGAAAGGATTTTTACCAATCCTAAATCTGATAGGTGGTGAATATTCAATA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATTTTTACCAATCCTAAATCTGATAGGTGGTGAATATTCAATA  1084

seq1  TATACAAAGAGCTCTAGAAGCTGGACTCCAGAAATTCAAATAACCTCATT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAGAGCTCTAGAAGCTGGACTCCAGAAATTCAAATAACCTCATT  1134

seq1  AAAAAATGGGGTACAGAGCAAACAAAGAATTC  1171
      ||||||||||||||||||||||||||||||||
seq2  AAAAAATGGGGTACAGAGCAAACAAAGAATTC  1166