BAC Information

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BAC

Clone NameB6Ng01-303L21
Chromosome5 (Build37)
Map Location 66,427,513 - 66,666,382
singlet/doubletdoublet
Overlap geneBC013481, LOC626714, LOC666854, LOC100042394, Nsun7
Upstream gene9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik
Downstream geneApbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303L21.bB6Ng01-303L21.g
ACCGA097469GA097470
length1,1191,120
definitionB6Ng01-303L21.b B6Ng01-303L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,427,513 - 66,428,614)(66,665,284 - 66,666,382)
sequence
gaattcacctaggggccccaaacaataagcaggggatgggagctctggct
caccctgcacccctcacccgtctacactaactgccttctgtgagtctcct
tgctgtaagcaaagtcttaaagagacaggagatcacgaagtcctagcctc
tacctttagaagcccccgactaaggaacagctccccataggagggccagg
ttatgttgatgctcttaacacagtctgttgtggcaaagaacatcactcaa
tgcatggctctgtttgataaacagaagcaaagccaagaggctcttttccc
aggcacttctatcaacacagtcctgaaaaggagactttgctgtgggttcc
cagggacaccagctgtatggctcaggaggggtggctactttccagaaagt
gggcaaagcagagggattttctgccccggagtttgacagtacctaaatat
ctgctaggaatccattatgttgatccttttataagcattacaacacttaa
cactcattcttaacgagttcactgatgctggaggaaacaaacgcctaaac
aagccactggcatacagtaggagggggtttatcgtttccctccttattct
ggctctgctggcctgagccattgagagatctgggaaggacagaaaagtct
gacaggaaggcaggcagatgcctgaatagagaaagaagctgctgcagtct
atcagatgctgtagcttgaagagatgcggtggtttggaagatttttgttt
gtttgtttgtttccacgcacatgatctcatttcccagtcccagactctga
gctgcgcaggcacccgaggtaccatttatcgcaggattttgaaccttctg
taggtctgtcagcattctggctgtgtgaggggatgccctgggtgtagtag
gaagtttggaaagcatccctgccgtctacccaggagatgcacaaacacac
gaccctgacaatgtgtgacaccagagatggcttcagactgtgcagtttgt
ggggggtgggaaatatgcagagtggctcttttgttgaagaacggcttgat
ggaaatcctaactggagttgcctagaacctgtaatgccaatatggtaaac
agtacatgggttggttatt
gaattctattagccatagaacagaagctttaagctttatcaggatgtatt
gggatacagtaatttagcctcagccaccaactcttcatgccagaatccca
ccgctccctcccatgaatctatccttagtcacacatacaagtctttgcaa
gcccttaatgtacatgatctcacctctctctcttcccttgctctctcctt
cccctccttcttccccccccccccccttccccttccactccccatctgtc
tcctctgcctggcctctgcatcaaatgacctgagttcaaacttttcacca
aatgctggcagcgtgcctttagatatggaacttttctaagctacacaagt
aagtaattagtatccaatgaacaagaattttgcaaagatacttatgaaaa
ttacagtcaggctaaagagaagattataattattatgtgtttattccttt
acaactattaacaaagtactgtgatgagacctggacctataatgactaaa
aagataatttgggcctctagtggcatctgcttgtaatgacagctgcagac
aggcaaacacaagattgttgcaaatttgaagctggcttggtctacctgac
aagtttcaaaccagccggcactacttattaataccctgcagtccccctaa
ccccccccaaaaaggactgtgatccttaagtaattggcagctcggtgctg
aaaagacagagaaacagtcccggcacaatctgatggttgctatgagatac
ataaataaagaataatcgtactaagaagaaatatattgatatctgtccca
aggggatttcttgagttaattagtaaagggcagcaatatccagaccacag
agaaagagaagacatagacagcaagggttctccagacacagcatgaagag
gagacacgagacccaccatgcacagagcacagtgccctaagagaaccctg
aggtccgggaaacagcataacacaatttaactgagcaagagggtggaaga
gaagccccagagtgaaggaagaacaaatccactgggttctttaaggacag
gaatgttgcactttgttgtgcaaaaaaaacaggaaggatgtttggatata
agagaacataagttaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66427513_66428614
seq2: B6Ng01-303L21.b_45_1163

seq1  GAATTCACCTAGGGGCCCCAAACAATAAGCAGGGGATGGGAGCTCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAGGGGCCCCAAACAATAAGCAGGGGATGGGAGCTCTGGCT  50

seq1  CACCCTGCACCCCTCACCCGTCTACACTAACTGCCTTCTGTGAGTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCACCCCTCACCCGTCTACACTAACTGCCTTCTGTGAGTCTCCT  100

seq1  TGCTGTAAGCAAAGTCTTAAAGAGACAGGAGATCACGAAGTCCTAGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAAGCAAAGTCTTAAAGAGACAGGAGATCACGAAGTCCTAGCCTC  150

seq1  TACCTTTAGAAGCCCCCGACTAAGGAACAGCTCCCCATAGGAGGGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTAGAAGCCCCCGACTAAGGAACAGCTCCCCATAGGAGGGCCAGG  200

seq1  TTATGTTGATGCTCTTAACACAGTCTGTTGTGGCAAAGAACATCACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGATGCTCTTAACACAGTCTGTTGTGGCAAAGAACATCACTCAA  250

seq1  TGCATGGCTCTGTTTGATAAACAGAAGCAAAGCCAAGAGGCTCTTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGCTCTGTTTGATAAACAGAAGCAAAGCCAAGAGGCTCTTTTCCC  300

seq1  AGGCACTTCTATCAACACAGTCCTGAAAAGGAGACTTTGCTGTGGGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTCTATCAACACAGTCCTGAAAAGGAGACTTTGCTGTGGGTTCC  350

seq1  CAGGGACACCAGCTGTATGGCTCAGGAGGGGTGGCTACTTTCCAGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACACCAGCTGTATGGCTCAGGAGGGGTGGCTACTTTCCAGAAAGT  400

seq1  GGGCAAAGCAGAGGGATTTTCTGCCCCGGAGTTTGACAGTACCTAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGCAGAGGGATTTTCTGCCCCGGAGTTTGACAGTACCTAAATAT  450

seq1  CTGCTAGGAATCCATTATGTTGATCCTTTTATAAGCATTACAACACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGGAATCCATTATGTTGATCCTTTTATAAGCATTACAACACTTAA  500

seq1  CACTCATTCTTAACGAGTTCACTGATGCTGGAGGAAACAAACGCCTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTCTTAACGAGTTCACTGATGCTGGAGGAAACAAACGCCTAAAC  550

seq1  AAGCCACTGGCATACAGTAGGAGGGGGTTTATCGTTTCCCTCCTTATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTGGCATACAGTAGGAGGGGGTTTATCGTTTCCCTCCTTATTCT  600

seq1  GGCTCTGCTGGCCTGAGCCATTGAGAGATCTGGGAAGGACAGAAAAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCTGGCCTGAGCCATTGAGAGATCTGGGAAGGACAGAAAAGTCT  650

seq1  GACAGGAAGGCAGGCAGATGCCTGAATAGAGAAAGAAGCTGCTGCAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAGGCAGGCAGATGCCTGAATAGAGAAAGAAGCTGCTGCAGTCT  700

seq1  ATCAGATGCTGTAGCTTGAAGAGATGCGGTGGTTTGGAAGATTTTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGCTGTAGCTTGAAGAGATGCGGTGGTTTGGAAGATTTTTGTTT  750

seq1  GTTTGTTTGTTTCCACGCACATGATCTCATTTCCCAGTCCCAGACTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTCCACGCACATGATCTCATTTCCCAGTCCCAGACTCTGA  800

seq1  GCTGCGCAGGCACCCGAGGTACCATTTATCGCAGGATTTTGAACCTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGCAGGCACCCGAGGTACCATTTATCGCAGGATTTTGAACCTTCTG  850

seq1  TAGGTCTGTCAGCATTCTGGCTGTGTGAGGGGATGCCCTGGGTGTAGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGTCAGCATTCTGGCTGTGTGAGGGGATGCCCTGGGTGTAGTAG  900

seq1  GAAGTTTGG-AAGCATCCCTGCCGTCTACCCAGGAGATGCACAAACACAC  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGGAAAGCATCCCTGCCGTCTACCCAGGAGATGCACAAACACAC  950

seq1  GA-CCTGACAATGTGTGACAACCAGAGATGGCTTCAGACTGTGCAGTTTG  998
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACCCTGACAATGTGTGAC-ACCAGAGATGGCTTCAGACTGTGCAGTTTG  999

seq1  T--GGGGTGGGAAATATGCAGAGTGGCTCTTT--GTGGAGAACGGC-TGA  1043
      |  |||||||||||||||||||||||||||||   || |||||||| |||
seq2  TGGGGGGTGGGAAATATGCAGAGTGGCTCTTTTGTTGAAGAACGGCTTGA  1049

seq1  TGG-AATC--TACTGGAGTTGCCAAGA--CTGT-ATG-CAATAT-GTAAA  1085
      ||| ||||   |||||||||||| |||  |||| ||| |||||| |||||
seq2  TGGAAATCCTAACTGGAGTTGCCTAGAACCTGTAATGCCAATATGGTAAA  1099

seq1  CAGTACATG---TTGTTATT  1102
      |||||||||   | ||||||
seq2  CAGTACATGGGTTGGTTATT  1119

seq1: chr5_66665284_66666382
seq2: B6Ng01-303L21.g_66_1185 (reverse)

seq1  TTTGTTA--CTATG-TCTC-TATATCCAAACATC---CCTCTGTTTTCTG  43
      |||||||   |||| |||| ||||||||||||||   ||| | |||| ||
seq2  TTTGTTAACTTATGTTCTCTTATATCCAAACATCCTTCCTGTTTTTTTTG  50

seq1  CACAACAAAAGTTGCAACA-TCCTGTCCTT-AAGAA-CCAGT-GATTTGT  89
      |||||||||   ||||||| |||||||||| ||||| ||||| |||||||
seq2  CACAACAAA--GTGCAACATTCCTGTCCTTAAAGAACCCAGTGGATTTGT  98

seq1  TCTCCCTTCACTCTGGGGC-TCTC-TCCACCCTC-TGCTCAGT--AAATG  134
      ||| ||||||||||||||| |||| ||||||||| ||||||||  || ||
seq2  TCTTCCTTCACTCTGGGGCTTCTCTTCCACCCTCTTGCTCAGTTAAATTG  148

seq1  TGTTATGCTGTTTCC--GGCCTCAGGG-TCTC-TAGGGCACTGTGCTCTG  180
      |||||||||||||||  | |||||||| |||| |||||||||||||||||
seq2  TGTTATGCTGTTTCCCGGACCTCAGGGTTCTCTTAGGGCACTGTGCTCTG  198

seq1  TGCAT-GTGGGTCTCGTGTCTCCTC-TCATGCTGTGTCTGGAGAACCCTT  228
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCATGGTGGGTCTCGTGTCTCCTCTTCATGCTGTGTCTGGAGAACCCTT  248

seq1  GCTGTCTATGTCTTCTC-TTCTCTGTGGTCTGGATATTGCTGCCCTTTAC  277
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTGTCTATGTCTTCTCTTTCTCTGTGGTCTGGATATTGCTGCCCTTTAC  298

seq1  TAATTAACTCAAGAAATCCCCTTGGGACAGATATCAATATATTTCTTCTT  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACTCAAGAAATCCCCTTGGGACAGATATCAATATATTTCTTCTT  348

seq1  AGTACGATTATTCTTTATTTATGTATCTCATAGCAACCATCAGATTGTGC  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGATTATTCTTTATTTATGTATCTCATAGCAACCATCAGATTGTGC  398

seq1  CGGGACTGTTTCTCTGTCTTTTCAGCACCGAGCTGCCAATTACTTAAGGA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACTGTTTCTCTGTCTTTTCAGCACCGAGCTGCCAATTACTTAAGGA  448

seq1  TCACAGTCCTTTTTGGGGGGGGTTAGGGGGACTGCAGGGTATTAATAAGT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCCTTTTTGGGGGGGGTTAGGGGGACTGCAGGGTATTAATAAGT  498

seq1  AGTGCCGGCTGGTTTGAAACTTGTCAGGTAGACCAAGCCAGCTTCAAATT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCGGCTGGTTTGAAACTTGTCAGGTAGACCAAGCCAGCTTCAAATT  548

seq1  TGCAACAATCTTGTGTTTGCCTGTCTGCAGCTGTCATTACAAGCAGATGC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAATCTTGTGTTTGCCTGTCTGCAGCTGTCATTACAAGCAGATGC  598

seq1  CACTAGAGGCCCAAATTATCTTTTTAGTCATTATAGGTCCAGGTCTCATC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAGGCCCAAATTATCTTTTTAGTCATTATAGGTCCAGGTCTCATC  648

seq1  ACAGTACTTTGTTAATAGTTGTAAAGGAATAAACACATAATAATTATAAT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTTTGTTAATAGTTGTAAAGGAATAAACACATAATAATTATAAT  698

seq1  CTTCTCTTTAGCCTGACTGTAATTTTCATAAGTATCTTTGCAAAATTCTT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTAGCCTGACTGTAATTTTCATAAGTATCTTTGCAAAATTCTT  748

seq1  GTTCATTGGATACTAATTACTTACTTGTGTAGCTTAGAAAAGTTCCATAT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGGATACTAATTACTTACTTGTGTAGCTTAGAAAAGTTCCATAT  798

seq1  CTAAAGGCACGCTGCCAGCATTTGGTGAAAAGTTTGAACTCAGGTCATTT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGCACGCTGCCAGCATTTGGTGAAAAGTTTGAACTCAGGTCATTT  848

seq1  GATGCAGAGGCCAGGCAGAGGAGACAGATGGGGAGTGGAAGGGGAAGGGG  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGGCCAGGCAGAGGAGACAGATGGGGAGTGGAAGGGGAAGGGG  898

seq1  GGGGGGGGGGAAGAAGGAGGGGAAGGAGAGAGCAAGGGAAGAGAGAGAGG  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGAAGAAGGAGGGGAAGGAGAGAGCAAGGGAAGAGAGAGAGG  948

seq1  TGAGATCATGTACATTAAGGGCTTGCAAAGACTTGTATGTGTGACTAAGG  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCATGTACATTAAGGGCTTGCAAAGACTTGTATGTGTGACTAAGG  998

seq1  ATAGATTCATGGGAGGGAGCGGTGGGATTCTGGCATGAAGAGTTGGTGGC  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCATGGGAGGGAGCGGTGGGATTCTGGCATGAAGAGTTGGTGGC  1048

seq1  TGAGGCTAAATTACTGTATCCCAATACATCCTGATAAAGCTTAAAGCTTC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTAAATTACTGTATCCCAATACATCCTGATAAAGCTTAAAGCTTC  1098

seq1  TGTTCTATGGCTAATAGAATTC  1099
      ||||||||||||||||||||||
seq2  TGTTCTATGGCTAATAGAATTC  1120