BAC Information

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BAC

Clone NameB6Ng01-303M12
Chromosome5 (Build37)
Map Location 133,366,049 - 133,366,999
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303M12.bB6Ng01-303M12.g
ACCGA097498GA097499
length1,206957
definitionB6Ng01-303M12.b B6Ng01-303M12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaaccg
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagaaaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggacccaatggaatagaattgaag
acccataaatgaacccacacacctatggtcacttgatcttcgacaaggga
gccaaaaccatccagtggaagaaagacagcattttcaacaatttggtgct
ggcacacctggttgttatcatgtagaagaatgccatcgatccatacttat
ctcctttgtactaaggtcaacatctaagtggcatccatgcaacttcaata
agaccagagcacactgaaacctatagaggagaaagtgcggtcaaagtcct
ggagaatatcgggcacaccggaaaagatccatgcaaacgaacagcactgg
ccttggtcctggtagatcgagaaactgtattaagttggggaaccctcaac
gtgtga
gaattccatgattttttgaaccaaccgaagtcacttcctgggtactgggg
gagtgaatcaatggggaaagtatttgctgagcaagtgggggcctgagttt
gagtcacaacactttcaaaaaaacccaggtgtgatgatgtgtatctgtaa
tcccagagctggagaggcagacacaggaagatccctgggcacgctatcag
ccctaactacttggaaaggtccaggttagtgaaagaccctatgccaagaa
agtagatggatcctaacaaagactacttaagcttgtcctctggcctatac
aacacacacacacacatgcacatgcacttgcacacgcgtgtgcacacaca
cacacatacacacacatatatacacaggcacacaggcacatatgcatgca
gagtcatctccaagactccctttttttttaaacatataagaaagatacag
cacaagacatagcatagtggagtccagttcaataaatgagcaattccaga
ccttagagctcttgaggaccaggagggaggcaaattcagtaaatgatgag
ccttcccttttccctgccctttactggggcatacaggacccatgggttgg
tatgtggtcctcccttctcccctggggctgttggctaccagaccactagg
acaaggggagttgaagggctcagacagcccttgagcataacagaaatgac
agacttatctctgggttcagatccagagaggcagctcagctttaatcagg
atgaatcaaggactatatagttttttgggagttgggtagggatttctagt
agatgtatgtacacttaactgctacttggagtactggaataatgacctgg
ttgcatggagaaccactctaagtattcctgtgcttgactgggacagctca
tagcacgagaaaagaagatgaacctggtaattcccaccgagaactacgtg
acattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_133366049_133366999
seq2: B6Ng01-303M12.g_63_1019 (reverse)

seq1  AGAATGTCACGTAGTT-TTGGTGAG-ATTA-CAGGTTCAACTTCCTTTCA  47
      |||||||||||||||| | |||| | |||| |||||||| |||| |||| 
seq2  AGAATGTCACGTAGTTCTCGGTGGGAATTACCAGGTTCATCTTCTTTTCT  50

seq1  CCTGATAAGAACCTGT-CCAG-CAAGCACTGGAATTCTTAGACTGGTTCT  95
      | || || | | |||| |||| ||||||| ||||| |||||| |||||||
seq2  CGTGCTATG-AGCTGTCCCAGTCAAGCACAGGAATACTTAGAGTGGTTCT  99

seq1  CCATGCAAACAAGGCATTA-TCCAGTACCCCAAGCTGTAGCTAATGATAC  144
      |||||||| || | ||||| |||||||| |||||  | || |||   |||
seq2  CCATGCAACCAGGTCATTATTCCAGTACTCCAAGTAGCAGTTAAGTGTAC  149

seq1  ATACCTATCCTAGAAATCCCTACCCAACTCCC-AAAAACTATATAGCCCT  193
      |||| | | ||||||||||||||||||||||| ||||||||||||| |||
seq2  ATACATCTACTAGAAATCCCTACCCAACTCCCAAAAAACTATATAGTCCT  199

seq1  TGATTCATCCTGATTAAAGCTGAGCTGCCTCTCTGGATCTGAACCCAGAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATCCTGATTAAAGCTGAGCTGCCTCTCTGGATCTGAACCCAGAG  249

seq1  ATAAGTCTGTCATTTCTGTTATGCTCAAGGGCTGTCTAAACCCTTCAACT  293
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  ATAAGTCTGTCATTTCTGTTATGCTCAAGGGCTGTCTGAGCCCTTCAACT  299

seq1  CCCCTTGTCCTAGTGGTCTGGTAGCCAACAGCCCCAGGGGAGAAGGGAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTCCTAGTGGTCTGGTAGCCAACAGCCCCAGGGGAGAAGGGAGG  349

seq1  ACCACATACCAACCCATGGGTCCTGTATGCCCCAGTAAAGGGCAGGGAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATACCAACCCATGGGTCCTGTATGCCCCAGTAAAGGGCAGGGAAA  399

seq1  AGGGAAGGCTCATCATTTACTGAATTTGCCTCCCTCCTGGTCCTCAAGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGCTCATCATTTACTGAATTTGCCTCCCTCCTGGTCCTCAAGAG  449

seq1  CTCTAAGGTCTGGAATTGCTCATTTATTGAACTGGACTCCACTATGCTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGTCTGGAATTGCTCATTTATTGAACTGGACTCCACTATGCTAT  499

seq1  GTCTTGTGCTGTATCTTTCTTATATGTTTAAAAAAAAAGGGAGTCTTGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTGCTGTATCTTTCTTATATGTTTAAAAAAAAAGGGAGTCTTGGA  549

seq1  GATGACTCTGCATGCATATGTGCCTGTGTGCCTGTGTATATATGTGTGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCTGCATGCATATGTGCCTGTGTGCCTGTGTATATATGTGTGTG  599

seq1  TATGTGTGTGTGTGTGCACACGCGTGTGCACGTGCATGTGCATGTGTGTG  643
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATGTGTGTGTGTGTGCACACGCGTGTGCAAGTGCATGTGCATGTGTGTG  649

seq1  TGTGTGTTGTATAGGCCAGAGGACAAGCTTAAGTAGTCTTTGTTAGGATC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTGTATAGGCCAGAGGACAAGCTTAAGTAGTCTTTGTTAGGATC  699

seq1  CATCTACTTTCTTGGCATAGGGTCTTTCACTAACCTGGACCTTTCCAAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTTTCTTGGCATAGGGTCTTTCACTAACCTGGACCTTTCCAAGT  749

seq1  AGTTAGGGCTGATAGCGTGCCCAGGGATCTTCCTGTGTCTGCCTCTCCAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGCTGATAGCGTGCCCAGGGATCTTCCTGTGTCTGCCTCTCCAG  799

seq1  CTCTGGGATTACAGATACACATCATCACACCTGGGTTTTTTTGAAAGTGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCTGGGATTACAGATACACATCATCACACCTGGGTTTTTTTGAAAGTGT  849

seq1  TGTGACTCAAACTCAGGCCCCCACTTGCTCAGCAAATACTTTCCCCATTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCAAACTCAGGCCCCCACTTGCTCAGCAAATACTTTCCCCATTG  899

seq1  ATTCACTCCCCCAGTACCCAGGAAGTGACTTCGGTTGGTTCTAAAAATCA  943
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTCACTCCCCCAGTACCCAGGAAGTGACTTCGGTTGGTTCAAAAAATCA  949

seq1  TGGAATTC  951
      ||||||||
seq2  TGGAATTC  957