BAC Information

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BAC

Clone NameB6Ng01-304B22
Chromosome5 (Build37)
Map Location 61,000,023 - 61,158,023
singlet/doubletdoublet
Overlap geneLOC100041498
Upstream geneLOC546866, Cbfa2t2-ps1
Downstream geneLOC666597, EG666610, LOC100041524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304B22.bB6Ng01-304B22.g
ACCGA097753GA097754
length1,055489
definitionB6Ng01-304B22.b B6Ng01-304B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,000,023 - 61,001,075)(61,157,529 - 61,158,023)
sequence
gaattcagacttcaggactataaaatgtgtgtttatataatctaaaatat
ttccaataattaattagctagcattcttggaataataaaaataatcccaa
ttccccccaaaagtaaaggtctcaattattaaatggaaatatataaggaa
cagaaggaaattagtcatgttgctttgataataaagatgttaaattcagt
ggcttccttatattttccaatacatagtgttgtaatttgttaaaaccttt
ctttttaaattcatttattgttttggttgttcttttaagtttcctgaact
attcatcaaagctctgaggttccagctctgcagcgccatcttatggagat
agtttgcatagccatttaatattgtctggcagagtaatcattgttctaac
agatttgatgcaaataggatccctgcctatgctttgaaaatggaagcaat
taaactgatgccaagagcactattttttctcctctttgttgttgcttatc
taaaatattcttatcgtagcaactgtatgattttgcaggcactcaaaatt
atgtactaagatctgaaattctcactacacacatcgaagggaggctagaa
aggaagaatgaagctgttgagtagggaaacgagacagcagtaaaagatca
cagtacagctggtgtttgctggcaagagtttccacttcaaaatttgcagc
agttcaaatgcctctattattattggtgcttttccctgatcatgttcacc
aggaatggagggaaaaaaaatacaaaactgaagtttgtaaaaaatcagag
aaataaactgtgaaatcctccttagagtgcatacattatctatttctgct
tccaattgtgttcctttaatgaacatcatataatattccagacttatgtg
gagacataaggatagatttttttaatgtttctgtcatcaaatgatattgt
caagaccccacaatctaacaagacagtaagatttacttaatctttcagaa
aaaaaaatgcaatttagtattggacttctaatgatgtcaaactaatgtcc
tgcta

acaaagactgggacagcatttatagtgcctataccagttcctttgcataa
cttttatggcttccagttttatgattttatgggatttgtactcttgcaaa
tgacagtctcttttgactccttttgggctcttttgtgtgcctgtgcttgt
tttgatgaattctaatgtattcatttttgttttaacttattgtattttta
ttttatcccttagaagcccgttttctctctaaagacagaaagggaatgaa
catgagtactggggaggaggaacaaagaggaatttgggggaggagggaaa
agaggatatgttaggtcagaaacaaatctaagcttaataaaggcaaataa
aatagacatgtatgttattacacacattatgtacctatgccagatgaagg
aatactaaagttctgctcccaagaaaacgattagaaatggctcttgtttg
atgggcttatccttttgtcttactggtcttgttttatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_61000023_61001075
seq2: B6Ng01-304B22.b_47_1101

seq1  GAATTCAGACTTCAGGACTATAAAATGTGTGTTTATATAATCTAAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTTCAGGACTATAAAATGTGTGTTTATATAATCTAAAATAT  50

seq1  TTCCAATAATTAATTAGCTAGCATTCTTGGAATAATAAAAATAATCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATAATTAATTAGCTAGCATTCTTGGAATAATAAAAATAATCCCAA  100

seq1  TTCCCCCCAAAAGTAAAGGTCTCAATTATTAAATGGAAATATATAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCAAAAGTAAAGGTCTCAATTATTAAATGGAAATATATAAGGAA  150

seq1  CAGAAGGAAATTAGTCATGTTGCTTTGATAATAAAGATGTTAAATTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAAATTAGTCATGTTGCTTTGATAATAAAGATGTTAAATTCAGT  200

seq1  GGCTTCCTTATATTTTCCAATACATAGTGTTGTAATTTGTTAAAACCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTTATATTTTCCAATACATAGTGTTGTAATTTGTTAAAACCTTT  250

seq1  CTTTTTAAATTCATTTATTGTTTTGGTTGTTCTTTTAAGTTTCCTGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAATTCATTTATTGTTTTGGTTGTTCTTTTAAGTTTCCTGAACT  300

seq1  ATTCATCAAAGCTCTGAGGTTCCAGCTCTGCAGCGCCATCTTATGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAAAGCTCTGAGGTTCCAGCTCTGCAGCGCCATCTTATGGAGAT  350

seq1  AGTTTGCATAGCCATTTAATATTGTCTGGCAGAGTAATCATTGTTCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCATAGCCATTTAATATTGTCTGGCAGAGTAATCATTGTTCTAAC  400

seq1  AGATTTGATGCAAATAGGATCCCTGCCTATGCTTTGAAAATGGAAGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGATGCAAATAGGATCCCTGCCTATGCTTTGAAAATGGAAGCAAT  450

seq1  TAAACTGATGCCAAGAGCACTATTTTTTCTCCTCTTTGTTGTTGCTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGATGCCAAGAGCACTATTTTTTCTCCTCTTTGTTGTTGCTTATC  500

seq1  TAAAATATTCTTATCGTAGCAACTGTATGATTTTGCAGGCACTCAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTCTTATCGTAGCAACTGTATGATTTTGCAGGCACTCAAAATT  550

seq1  ATGTACTAAGATCTGAAATTCTCACTACACACATCGAAGGGAGGCTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTAAGATCTGAAATTCTCACTACACACATCGAAGGGAGGCTAGAA  600

seq1  AGGAAGAATGAAGCTGTTGAGTAGGGAAACGAGACAGCAGTAAAAGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAATGAAGCTGTTGAGTAGGGAAACGAGACAGCAGTAAAAGATCA  650

seq1  CAGTACAGCTGGTGTTTGCTGGCAAGAGTTTCCACTTCAAAATTTGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGCTGGTGTTTGCTGGCAAGAGTTTCCACTTCAAAATTTGCAGC  700

seq1  AGTTCAAATGCCTCTATTATTATTGGTGCTTTTCCCTGATCATGTTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATGCCTCTATTATTATTGGTGCTTTTCCCTGATCATGTTCACC  750

seq1  AGGAATGGAGGGAAAAAAAATACAAAACTGAAGTTTGTAAAAAATCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAGGGAAAAAAAATACAAAACTGAAGTTTGTAAAAAATCAGAG  800

seq1  AAATAAACTGTGAAATCCTCCTTAGAGTGCATACATTTATCTATTTCTGC  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATAAACTGTGAAATCCTCCTTAGAGTGCATACA-TTATCTATTTCTGC  849

seq1  TTCCAATTGTGTTCCTTTAAATGAACATCATATAATATTCAAGACTTATG  900
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TTCCAATTGTGTTCCTTT-AATGAACATCATATAATATTCCAGACTTATG  898

seq1  TGGAGACATAAGGATAGATTTTTTTAATGTTTCTGTCATCAAATGATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACATAAGGATAGATTTTTTTAATGTTTCTGTCATCAAATGATATT  948

seq1  GTCAAGA-CCCACAATCTAAC-AGACAGTAAGATTTAC-TAATCTTTCAG  997
      ||||||| ||||||||||||| |||||||||||||||| |||||||||||
seq2  GTCAAGACCCCACAATCTAACAAGACAGTAAGATTTACTTAATCTTTCAG  998

seq1  -AAAAAAAATGCAATTTAGTATT-GACTTCTAAATGATGTCAAAACTAAT  1045
       |||||||||||||||||||||| ||||||| ||||||||| ||||||||
seq2  AAAAAAAAATGCAATTTAGTATTGGACTTCT-AATGATGTC-AAACTAAT  1046

seq1  GT-CTGCTA  1053
      || ||||||
seq2  GTCCTGCTA  1055


seq1: chr5_61157529_61158023
seq2: B6Ng01-304B22.g_66_560 (reverse)

seq1  ATATAAAACAAGACCAGTAAGACAAAAGGATAAGCCCATCAAACAAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACAAGACCAGTAAGACAAAAGGATAAGCCCATCAAACAAGAGC  50

seq1  CATTTCTAATCGTTTTCTTGGGTGCAGTACTTTAGTATTCCTTCATCTGG  100
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CATTTCTAATCGTTTTCTTGGGAGCAGAACTTTAGTATTCCTTCATCTGG  100

seq1  CATAGGTACTTATTGTGTGTAATAACATACATGTCTATTTTATTTGCCTT  150
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  CATAGGTACATAATGTGTGTAATAACATACATGTCTATTTTATTTGCCTT  150

seq1  TATTAAGCTTAGATTTGTTTCTGACCTAACATATCCTCTTTTCCCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCTTAGATTTGTTTCTGACCTAACATATCCTCTTTTCCCTCCTC  200

seq1  CCCCAAATTCCTCTTTGTTCCTCCTCCCCAGTACTCATGTTCATTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATTCCTCTTTGTTCCTCCTCCCCAGTACTCATGTTCATTCCCTT  250

seq1  TCTGTCTTTAGAGAGAAAACGGGCTTCTAAGGGATAAAATAAAAATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTAGAGAGAAAACGGGCTTCTAAGGGATAAAATAAAAATACAA  300

seq1  TAAGTTAAAACAAAAATGAATACATTAGAATTCATCAAAACAAGCACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAAAACAAAAATGAATACATTAGAATTCATCAAAACAAGCACAGG  350

seq1  CACACAAAAGAGCCCAAAAGGAGTCAAAAGAGACTGTCATTTGCAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAAGAGCCCAAAAGGAGTCAAAAGAGACTGTCATTTGCAAGAGT  400

seq1  ACAAATCCCATAAAATCATAAAACTGGAAGCCATAAAAGTTATGCAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCCATAAAATCATAAAACTGGAAGCCATAAAAGTTATGCAAAGG  450

seq1  AACTGGTATAGGCACTATAAATGCTGTCCCAGTCTTTGTGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTATAGGCACTATAAATGCTGTCCCAGTCTTTGTGAATTC  495


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