BAC Information

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BAC

Clone NameB6Ng01-304G01
Chromosome5 (Build37)
Map Location 135,969,049 - 136,136,808
singlet/doubletdoublet
Overlap geneHip1, Ccl26l, Ccl24, Rhbdd2
Upstream geneClip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121
Downstream genePor, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304G01.bB6Ng01-304G01.g
ACCGA097950GA097951
length1,0471,108
definitionB6Ng01-304G01.b B6Ng01-304G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,969,049 - 135,970,087)(136,135,620 - 136,136,808)
sequence
gaattctgatgttttaactactgagcctgtggtcagctttgttgtagcga
ttactggaaatgcacatgctcaaaggccagcaagcactgaagcttgccta
aactgcccttgggctgggctgctttccagttacctcaccctgaagctgtg
acaaaagaggaccagctagccaggggcaagaatgtaccttgctccattta
caggggcgaggcctgtgcagaagtgtctcagaaaacagcctctgggggct
gctgagcacctaaaggcacttacctaaagaactaagttcgatccctggga
cccacatgataaaaggagtcaactgattactggaagctgccctctgacct
ccacacaaggacagtggcatatgtgggacatgtgtgggccccaccaataa
atgaataagcacataaataagtaaataaataaatggagtaaaaattgtaa
aacaaacacaccctctcaactgatctacatatttgcctgtagtctcttcc
tctctcatcattcttttttttttttttttaaagatttatttattattata
attaagtacactgtagctgtcttcaggcacaccagaagagagtgtcagat
ctcattacggatggttgtgagccaccatgtggttgctgggatttgaactc
aggaccttcggaagagcagtcagtgctcttaaccgctgagccatctctcc
agccccctctctctcatcattcttacagtaatttaattataatttctcat
cggccaacctcaaataaaaaaacagatcccctttttttttttttttaatc
aagaccttttaatgctttgggcttcccctcccacctttggtagtctacct
tctcccagtctctcacccctcccactttaccatacttctcatctttggca
atttaagtgagacctttacctcaagtaaaaaccaaaaaaacctgaacgaa
catatcaaatatcaaagaggcttgggggcatgacttcagcagtatagcct
gctatgaatcctctcagtaaaggctgggggcgtggccctcagcggta
gaattccaggcagactgtgcccttggcaattcccactgtccaatcccatg
ggccacaggctccctttctcattccagactctgcccagccttcaccatgg
tggcccctgacactcttgtgttcttgtccagtcccatattcaccctgtgt
tcccattctgctcatagctgccctatggtagacgccctggcacggcccat
tctcagggcacagttcacagtccctgcagccgtcctgagagtctttcgga
ctgtgacggccagtgtgtggtctagacgggaagaaattggacatgacttt
cctcttggctctgggaggtcctgggatcagggcaaggaactctgtttatg
tccagggactggttacacaaagctacagatacgttatacttgcctagaat
acccaaagagggactagagggtacggctcagtaatctgcttatttgccta
gaattctcccacatatgcacatacacacacacagacacacacacagacac
acacacgcttctttgcaatcagattagtctgacagacaggctagcttttc
acattcaactctctggctcatgatgtggctctccttttcttgaacagttg
tttggggggacttctgtatctcacccctagaactcctatccagccactgc
ccactgaagggacagtactgctggtcactacagaggatggaacagggaac
tcggaaagctcaggattaggcagtccaggcctgcctgggccctggcaact
gtttgtgctggtgataacatcctcttggaccatagcggcctgacagagtg
ctctggagccggtggcatctggattccatccttatcgcaagtttttattt
ccttttgttttgctagtgagacaagacagcttctctatgtcctggacttg
aatttgtgatccctgttacctcaggttctcaagacctgagattacaggct
tgtgtcaccacatcccacttttatcatacccccactgacccccccaatat
taaacatttttattcttaagttccttgaagcatgcttagcttggtcccct
cttaccattgaagccacaccccagacccttcccttgggggattctcagca
gggattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135969049_135970087
seq2: B6Ng01-304G01.b_43_1089

seq1  GAATTCTGATGTTTTAACTACTGAGCCTGTGGTCAGCTTTGTTGTAGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGTTTTAACTACTGAGCCTGTGGTCAGCTTTGTTGTAGCGA  50

seq1  TTACTGGAAATGCACATGCTCAAAGGCCAGCAAGCACTGAAGCTTGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGAAATGCACATGCTCAAAGGCCAGCAAGCACTGAAGCTTGCCTA  100

seq1  AACTGCCCTTGGGCTGGGCTGCTTTCCAGTTACCTCACCCTGAAGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCCTTGGGCTGGGCTGCTTTCCAGTTACCTCACCCTGAAGCTGTG  150

seq1  ACAAAAGAGGACCAGCTAGCCAGGGGCAAGAATGTACCTTGCTCCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAGGACCAGCTAGCCAGGGGCAAGAATGTACCTTGCTCCATTTA  200

seq1  CAGGGGCGAGGCCTGTGCAGAAGTGTCTCAGAAAACAGCCTCTGGGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCGAGGCCTGTGCAGAAGTGTCTCAGAAAACAGCCTCTGGGGGCT  250

seq1  GCTGAGCACCTAAAGGCACTTACCTAAAGAACTAAGTTCGATCCCTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCACCTAAAGGCACTTACCTAAAGAACTAAGTTCGATCCCTGGGA  300

seq1  CCCACATGATAAAAGGAGTCAACTGATTACTGGAAGCTGCCCTCTGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGATAAAAGGAGTCAACTGATTACTGGAAGCTGCCCTCTGACCT  350

seq1  CCACACAAGGACAGTGGCATATGTGGGACATGTGTGGGCCCCACCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAGGACAGTGGCATATGTGGGACATGTGTGGGCCCCACCAATAA  400

seq1  ATGAATAAGCACATAAATAAGTAAATAAATAAATGGAGTAAAAATTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAGCACATAAATAAGTAAATAAATAAATGGAGTAAAAATTGTAA  450

seq1  AACAAACACACCCTCTCAACTGATCTACATATTTGCCTGTAGTCTCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACACCCTCTCAACTGATCTACATATTTGCCTGTAGTCTCTTCC  500

seq1  TCTCTCATCATTCTTTTTTTTTTTTTTTTAAAGATTTATTTATTATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATCATTCTTTTTTTTTTTTTTTTAAAGATTTATTTATTATTATA  550

seq1  ATTAAGTACACTGTAGCTGTCTTCAGGCACACCAGAAGAGAGTGTCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTACACTGTAGCTGTCTTCAGGCACACCAGAAGAGAGTGTCAGAT  600

seq1  CTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTC  650

seq1  AGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCC  700

seq1  AGCCCCCTCTCTCTCATCATTCTTACAGTAATTTAATTATAATTTCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTCTCTCTCATCATTCTTACAGTAATTTAATTATAATTTCTCAT  750

seq1  CGGCCAACCTCAAAT-AAAAAACAGATCCCC--TTTTTTTTTTTTTAATC  797
      ||||||||||||||| |||||||||||||||  |||||||||||||||||
seq2  CGGCCAACCTCAAATAAAAAAACAGATCCCCTTTTTTTTTTTTTTTAATC  800

seq1  AAGACC-TTTAATGCTTT-GGCCTCCCCTCCCACCTTT-GTAGTCTACCT  844
      |||||| ||||||||||| ||| ||||||||||||||| |||||||||||
seq2  AAGACCTTTTAATGCTTTGGGCTTCCCCTCCCACCTTTGGTAGTCTACCT  850

seq1  TCTCCCAGTCTCTCACCCCTCCCACTTTACCATACTTCTCATCTTTGGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGTCTCTCACCCCTCCCACTTTACCATACTTCTCATCTTTGGCA  900

seq1  ATTTAAGTGAGACCCTTACCTCAAAGTAAAAACCAAAAAAACCTAAACAA  944
      |||||||||||||| ||||||| ||||||||||||||||||||| ||| |
seq2  ATTTAAGTGAGACCTTTACCTC-AAGTAAAAACCAAAAAAACCTGAACGA  949

seq1  ACAAACAAAATAT-AAAGAGGGCTGGGGGCATGAC-TCAGCAGTAGAGCC  992
      ||| |  |||||| |||||||  |||||||||||| ||||||||| || |
seq2  ACATATCAAATATCAAAGAGGCTTGGGGGCATGACTTCAGCAGTATAG-C  998

seq1  CTGCCTAGAATCCTC-CAGTAAGGGGCTGGGGGCGTGG--CTCAGCGGTA  1039
      ||||   |||||||| ||||||  ||||||||||||||  ||||||||||
seq2  CTGCTATGAATCCTCTCAGTAA-AGGCTGGGGGCGTGGCCCTCAGCGGTA  1047

seq1: chr5_136135620_136136808
seq2: B6Ng01-304G01.g_69_1176 (reverse)

seq1  AGAATCCCTCAGTGAGGAGCTGGGGGTGTGGCTCAGTGGTAGAGCCCCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTAGAATCCTCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAACCC  100
                                                 |||| ||
seq2  -------------------------------------------AGAATCC  7

seq1  CTGCCGAGAATCCCCCA--GGGAGGGTCTGGGGGTGTGGC-TCAATGGT-  146
      |||| ||||||||||||  || ||||||| |||||||||| |||||||| 
seq2  CTGCTGAGAATCCCCCAAGGGAAGGGTCT-GGGGTGTGGCTTCAATGGTA  56

seq1  AGAGGGGACC-AGCCTAGCATGC-TCAAGG-ACTT-AGA--TAAAATGTT  190
      |||||||||| |||  ||||||| |||||| |||| |||   ||||||||
seq2  AGAGGGGACCAAGCTAAGCATGCTTCAAGGAACTTAAGAATAAAAATGTT  106

seq1  TAATATTGGGGGGGTCAGTGGGGGTATGAT-AAAGTGGGATGTGGTGACA  239
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAATATTGGGGGGGTCAGTGGGGGTATGATAAAAGTGGGATGTGGTGACA  156

seq1  CAAGCCTGTAATCTCAGGTCTTGAGAACCTGAGGTAACA-GGATCACAAA  288
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAAGCCTGTAATCTCAGGTCTTGAGAACCTGAGGTAACAGGGATCACAAA  206

seq1  TTCAAGTCCAGGACATAGAGAAGCTGTCTTGTCTCACTAGCAAAACAAAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCCAGGACATAGAGAAGCTGTCTTGTCTCACTAGCAAAACAAAA  256

seq1  GGAAATAAAAACTTGCGATAAGGATGGAATCCAGATGCCACCGGCTCCAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAAACTTGCGATAAGGATGGAATCCAGATGCCACCGGCTCCAG  306

seq1  AGCACTCTGTCAGGCCGCTATGGTCCAAGAGGATGTTATCACCAGCACAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTGTCAGGCCGCTATGGTCCAAGAGGATGTTATCACCAGCACAA  356

seq1  ACAGTTGCCAGGGCCCAGGCAGGCCTGGACTGCCTAATCCTGAGCTTTCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCCAGGGCCCAGGCAGGCCTGGACTGCCTAATCCTGAGCTTTCC  406

seq1  GAGTTCCCTGTTCCATCCTCTGTAGTGACCAGCAGTACTGTCCCTTCAGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCTGTTCCATCCTCTGTAGTGACCAGCAGTACTGTCCCTTCAGT  456

seq1  GGGCAGTGGCTGGATAGGAGTTCTAGGGGTGAGATACAGAAGTCCCCCCA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGGCTGGATAGGAGTTCTAGGGGTGAGATACAGAAGTCCCCCCA  506

seq1  AACAACTGTTCAAGAAAAGGAGAGCCACATCATGAGCCAGAGAGTTGAAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTGTTCAAGAAAAGGAGAGCCACATCATGAGCCAGAGAGTTGAAT  556

seq1  GTGAAAAGCTAGCCTGTCTGTCAGACTAATCTGATTGCAAAGAAGCGTGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGCTAGCCTGTCTGTCAGACTAATCTGATTGCAAAGAAGCGTGT  606

seq1  GTGTGTCTGTGTGTGTGTCTGTGTGTGTGTATGTGCATATGTGGGAGAAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTGTGTGTGTCTGTGTGTGTGTATGTGCATATGTGGGAGAAT  656

seq1  TCTAGGCAAATAA-CACATTACTGAGCCGTACCCTCTAGTCCCTCTTTGG  787
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  TCTAGGCAAATAAGCAGATTACTGAGCCGTACCCTCTAGTCCCTCTTTGG  706

seq1  GTATTCTAGGCAAGTATAACGTATCTGTAGCTTTGTGTAACCAGTCCCTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTAGGCAAGTATAACGTATCTGTAGCTTTGTGTAACCAGTCCCTG  756

seq1  GACATAAACAGAGTTCCTTGCCCTGATCCCAGGACCTCCCAGAGCCAAGA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAACAGAGTTCCTTGCCCTGATCCCAGGACCTCCCAGAGCCAAGA  806

seq1  GGAAAGTCATGTCCAATTTCTTCCCGTCTAGACCACACACTGGCCGTCAC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCATGTCCAATTTCTTCCCGTCTAGACCACACACTGGCCGTCAC  856

seq1  AGTCCGAAAGACTCTCAGGACGGCTGCAGGGACTGTGAACTGTGCCCTGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGAAAGACTCTCAGGACGGCTGCAGGGACTGTGAACTGTGCCCTGA  906

seq1  GAATGGGCCGTGCCAGGGCGTCTACCATAGGGCAGCTATGAGCAGAATGG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGCCGTGCCAGGGCGTCTACCATAGGGCAGCTATGAGCAGAATGG  956

seq1  GAACACAGGGTGAATATGGGACTGGACAAGAACACAAGAGTGTCAGGGGC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGGGTGAATATGGGACTGGACAAGAACACAAGAGTGTCAGGGGC  1006

seq1  CACCATGGTGAAGGCTGGGCAGAGTCTGGAATGAGAAAGGGAGCCTGTGG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGTGAAGGCTGGGCAGAGTCTGGAATGAGAAAGGGAGCCTGTGG  1056

seq1  CCCATGGGATTGGACAGTGGGAATTGCCAAGGGCACAGTCTGCCTGGAAT  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGATTGGACAGTGGGAATTGCCAAGGGCACAGTCTGCCTGGAAT  1106

seq1  TC  1189
      ||
seq2  TC  1108