BAC Information

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BAC

Clone NameB6Ng01-304I01
Chromosome5 (Build37)
Map Location 136,383,191 - 136,490,464
singlet/doubletdoublet
Overlap geneYwhag, Srcrb4d, Zp3, Dtx2
Upstream geneCldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1
Downstream geneUpk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304I01.bB6Ng01-304I01.g
ACCGA098044GA098045
length1,1291,117
definitionB6Ng01-304I01.b B6Ng01-304I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,489,331 - 136,490,464)(136,383,191 - 136,384,312)
sequence
gaattccaggccagcctgaaataaacagagagactttttctaaaaacaaa
acaaaattttaaaataaaataaaaacaaacaaacacaacaatagcaaaca
ctagtcagagctgagatggttcagtgggtagagaagactccagccaagcc
tgacaacccgagtttaatcccagagccatgcatggtaggaggaactagct
cacacggggcactgtggcacctgtacttgctggcatgcattctctctctc
tctcactcactcacactctcacacactcacacacacacacacacacacaa
aggtggtaaagccggggcgtggtggtgcacgcctttaatcctagctcttg
ggaggcagaggcaggcggatttctgagtttgaggccagcctggtctacag
agtgagttccaaggacagccagggctacacagagaaaccctgtctcgggg
agaaacaaaaaacaaaaaaaacatctaaaacggagtcccaggacagccag
ggctatacagagaaaccctgtcttgaacaaaaaggaaaagaaacaaaaaa
caaaaaaacaatctgacttgggggctggagagatggctcacagttaaaag
caatggctgctcttccagaggattcaggttcaattcccaggaccacacgg
tgactcacaactccagttctaggggatgtgacatcctctcccggcaccag
gcaagcatgtgcacacagtacaggcaaaccaccacacacgcttaaaaaca
aaacacaaacccatcaaaccaaaccacaacagcaaaactccacctggctt
tgcatgagggcataagctataaccccaacccctggaagactgagacagaa
agagcaaagtccaggccagcctcagctgttcagcagcaaagctggggctc
agtgcaatgtagacccagtgggcaagcgcagagcccagacgctcagaact
aaaagtgtactgcctggttgggatggaccttggatatcatcactttctcg
gcatttatatcccacgccttccatcttcccacttacctgggctcctcaga
actaactgtgggctcaggtttagagctgcctgtttccacccccatatctg
cactgccgccacaaggccaagtattctca
gaattcagattcatctggttattgaatgtcaactcccagaaatagagact
gctgttagcggggttagttttcggcggaggccgttcccccaagcttgact
gaggcccagactgccgttcttggccacccgatcaccctgtgagtcaacag
caggttcagctgaccagtgtcaaggccaacacatgtggtaatcacgcata
aatagagtgaggagagagcagtaacaggagcatatgtcccgggcagaaag
agcctgccgtgctcccacctccagagttcttggaaggagcagtactcaga
tagggagggtcccaagtacgtgggtaggtcactccactagcaccactccc
aactcctgccaccaccctttctgtattgcttttactcccccctttttaaa
gacaggctcttcctatgttggtcacccagcctggctctgaactcaagacc
ttactttagcatccagggtgctgctatgtgcctcttggttattactacat
tctccccccactcctacaacacagggtttctctgggcaaccctggctctc
ctggaatttgctcttgtagaccaggctggtcttgaactcagaggtgcaag
cctatacatactccagctctccggtggcaagctgatctttcagcttactc
tgcctgggtgacagtgagcctaccaagctccactcttcagtcatatcaat
ccctcctaaatgacacattagcggacccagcacaagccctggggatgtga
catgactgcgaagcacctcagtcagttgtctcactgtataataaatgtaa
gctggccctgaatttgtgatcctcctgcctcagagtatcaagtactggga
tcacagatgtaaaaccaccaaaccaacttgctccatctccactcccaccc
cccagcccctacaactgtgccaggaagtcaaatctaccctcccacctgct
agaccagagctgagcctctgagccccaacccccggcagcctcactcccag
tggaggtggagggacgccccacgccatcacatgtcaaaaaacacagcagt
taaacgctaataaatgagctggtcacgtcggacctcaggatctgtagtta
ttttgctcaatgtacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_136489331_136490464
seq2: B6Ng01-304I01.b_45_1173 (reverse)

seq1  TGAGGATACTTTGCCTTGTGGCGGGCAGTGCAGATATGGGGGTGGAAACA  50
      |||| |||||| |||||||||| |||||||||||||||||||||||||||
seq2  TGAGAATACTTGGCCTTGTGGC-GGCAGTGCAGATATGGGGGTGGAAACA  49

seq1  -GCAGCTCTAACCCTGAGCCCACAGTTAGTTCTGAGGAGCCCAGGGTAAG  99
       |||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  GGCAGCTCTAAACCTGAGCCCACAGTTAGTTCTGAGGAGCCCA-GGTAAG  98

seq1  TGGGAAAGATGGAAGGCGTGGGATATAAAATGCCGAGAAAGGTGATGATA  149
      |||| ||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TGGG-AAGATGGAAGGCGTGGGATAT-AAATGCCGAGAAA-GTGATGATA  145

seq1  TCCAAGGTCCATCCCAACCAGGCAGTACACTTTTAGTTCTGAGCGTCTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGTCCATCCCAACCAGGCAGTACACTTTTAGTTCTGAGCGTCTGG  195

seq1  GCTCTGCGCTTGCCCACTGGGTCTACATTGCACTGAGCCCCAGCTTTGCC  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTCTGCGCTTGCCCACTGGGTCTACATTGCACTGAGCCCCAGCTTTG-C  244

seq1  TGCTGAACAGCTGAGGCTGGCCTGGACTTTGCTCTTTCTGTCTCAGTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAACAGCTGAGGCTGGCCTGGACTTTGCTCTTTCTGTCTCAGTCTT  294

seq1  CCAGGGGTTGGGGTTATAGCTTATGCCCTCATGCAAAGCCAGGTGGAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGTTGGGGTTATAGCTTATGCCCTCATGCAAAGCCAGGTGGAGTT  344

seq1  TTGCTGTTGTGGTTTGGTTTGATGGGTTTGTGTTTTGTTTTTAAGCGTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTGTGGTTTGGTTTGATGGGTTTGTGTTTTGTTTTTAAGCGTGT  394

seq1  GTGGTGGTTTGCCTGTACTGTGTGCACATGCTTGCCTGGTGCCGGGAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTTTGCCTGTACTGTGTGCACATGCTTGCCTGGTGCCGGGAGAG  444

seq1  GATGTCACATCCCCTAGAACTGGAGTTGTGAGTCACCGTGTGGTCCTGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCACATCCCCTAGAACTGGAGTTGTGAGTCACCGTGTGGTCCTGGG  494

seq1  AATTGAACCTGAATCCTCTGGAAGAGCAGCCATTGCTTTTAACTGTGAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACCTGAATCCTCTGGAAGAGCAGCCATTGCTTTTAACTGTGAGC  544

seq1  CATCTCTCCAGCCCCCAAGTCAGATTGTTTTTTTGTTTTTTGTTTCTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAGCCCCCAAGTCAGATTGTTTTTTTGTTTTTTGTTTCTTTT  594

seq1  CCTTTTTGTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGGA  644

seq1  CTCCGTTTTAGATGTTTTTTTTGTTTTTTGTTTCTCCCCGAGACAGGGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTTTAGATGTTTTTTTTGTTTTTTGTTTCTCCCCGAGACAGGGTT  694

seq1  TCTCTGTGTAGCCCTGGCTGTCCTTGGAACTCACTCTGTAGACCAGGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAGCCCTGGCTGTCCTTGGAACTCACTCTGTAGACCAGGCTG  744

seq1  GCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGAGCTAGGATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGAGCTAGGATTA  794

seq1  AAGGCGTGCACCACCACGCCCCGGCTTTACCACCTTTGTGTGTGTGTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCACCACCACGCCCCGGCTTTACCACCTTTGTGTGTGTGTGTG  844

seq1  TGTGTGTGAGTGTGTGAGAGTGTGAGTGAGTGAGAGAGAGAGAGAATGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGAGTGTGTGAGAGTGTGAGTGAGTGAGAGAGAGAGAGAATGCA  894

seq1  TGCCAGCAAGTACAGGTGCCACAGTGCCCCGTGTGAGCTAGTTCCTCCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAAGTACAGGTGCCACAGTGCCCCGTGTGAGCTAGTTCCTCCTA  944

seq1  CCATGCATGGCTCTGGGATTAAACTCGGGTTGTCAGGCTTGGCTGGAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATGGCTCTGGGATTAAACTCGGGTTGTCAGGCTTGGCTGGAGTC  994

seq1  TTCTCTACCCACTGAACCATCTCAGCTCTGACTAGTGTTTGCTATTGTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACCCACTGAACCATCTCAGCTCTGACTAGTGTTTGCTATTGTTG  1044

seq1  TGTTTGTTTGTTTTTATTTTATTTTAAAATTTTGTTTTGTTTTTAGAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTATTTTATTTTAAAATTTTGTTTTGTTTTTAGAAAA  1094

seq1  AGTCTCTCTGTTTATTTCAGGCTGGCCTGGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCTGTTTATTTCAGGCTGGCCTGGAATTC  1129

seq1: chr5_136383191_136384312
seq2: B6Ng01-304I01.g_68_1184

seq1  GAATTCAGATTCATCTGGTTATTGAATGTCAACTCCCAGAAATAGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCATCTGGTTATTGAATGTCAACTCCCAGAAATAGAGACT  50

seq1  GCTGTTAGCGGGGTTAGTTTTCGGCGGAGGCCGTTCCCCCAAGCTTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGCGGGGTTAGTTTTCGGCGGAGGCCGTTCCCCCAAGCTTGACT  100

seq1  GAGGCCCAGACTGCCGTTCTTGGCCACCCGATCACCCTGTGAGTCAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCAGACTGCCGTTCTTGGCCACCCGATCACCCTGTGAGTCAACAG  150

seq1  CAGGTTCAGCTGACCAGTGTCAAGGCCAACACATGTGGTAATCACGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAGCTGACCAGTGTCAAGGCCAACACATGTGGTAATCACGCATA  200

seq1  AATAGAGTGAGGAGAGAGCAGTAACAGGAGCATATGTCCCGGGCAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTGAGGAGAGAGCAGTAACAGGAGCATATGTCCCGGGCAGAAAG  250

seq1  AGCCTGCCGTGCTCCCACCTCCAGAGTTCTTGGAAGGAGCAGTACTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCCGTGCTCCCACCTCCAGAGTTCTTGGAAGGAGCAGTACTCAGA  300

seq1  TAGGGAGGGTCCCAAGTACGTGGGTAGGTCACTCCACTAGCACCACTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGGTCCCAAGTACGTGGGTAGGTCACTCCACTAGCACCACTCCC  350

seq1  AACTCCTGCCACCACCCTTTCTGTATTGCTTTTACTCCCCCCTTTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGCCACCACCCTTTCTGTATTGCTTTTACTCCCCCCTTTTTAAA  400

seq1  GACAGGCTCTTCCTATGTTGGTCACCCAGCCTGGCTTTGAACTCAAGACC  450
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACAGGCTCTTCCTATGTTGGTCACCCAGCCTGGCTCTGAACTCAAGACC  450

seq1  TTACTTTAGCATCCAGGGTGCTGCTATGTGCCTCTTGGTTATTACTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAGCATCCAGGGTGCTGCTATGTGCCTCTTGGTTATTACTACAT  500

seq1  TCTCCCCCCACTCCTACAACACAGGGTTTCTCTGGGCAACCCTGGCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCCACTCCTACAACACAGGGTTTCTCTGGGCAACCCTGGCTCTC  550

seq1  CTGGAATTTGCTCTTGTAGACCAGGCTGGTCTTGAACTCAGAGGTGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTTGCTCTTGTAGACCAGGCTGGTCTTGAACTCAGAGGTGCAAG  600

seq1  CCTATACATACTCCAGCTCTCCGGTGGCAAGCTGATCTTTCAGCTTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACATACTCCAGCTCTCCGGTGGCAAGCTGATCTTTCAGCTTACTC  650

seq1  TGCCTGGGTGACAGTGAGCCTACCAAGCTCCACTCTTCAGTCATATCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGTGACAGTGAGCCTACCAAGCTCCACTCTTCAGTCATATCAAT  700

seq1  CCCTCCTAAATGACACATTAGCGGACCCAGCACAAGCCCTGGGGATGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTAAATGACACATTAGCGGACCCAGCACAAGCCCTGGGGATGTGA  750

seq1  CATGACTGCGAAGCACCTCAGTCAGTTGTCTCACTGTATAATAAATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTGCGAAGCACCTCAGTCAGTTGTCTCACTGTATAATAAATGTAA  800

seq1  GCTGGCCCTGAATTTGTGATCCTCCTGCCTCAGAGTATCAAGTACTGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCTGAATTTGTGATCCTCCTGCCTCAGAGTATCAAGTACTGGGA  850

seq1  TCACAGATGTAAAACCACCAAACCAACTTGCTCCATCTCCACTCCCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATGTAAAACCACCAAACCAACTTGCTCCATCTCCACTCCCACCC  900

seq1  CCCAGCCCCTACAAACTGTGCCAGGAAGTCAAATCTAACCCTCCCACCTG  950
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  CCCAGCCCCTAC-AACTGTGCCAGGAAGTCAAATCT-ACCCTCCCACCTG  948

seq1  CTAGACCAGAGCTGAGCCTCTGAGCCCCAACCCCCGCCAGCCTCACTCCC  1000
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  CTAGACCAGAGCTGAGCCTCTGAGCCCCAACCCCCGGCAGCCTCACT-CC  997

seq1  CAGTGGAGGTGGA-GGACGCCCACCGCCAATCACATTGTC-AAAAACACA  1048
      ||||||||||||| ||||||||  |||| |||||| |||| |||||||||
seq2  CAGTGGAGGTGGAGGGACGCCCCACGCC-ATCACA-TGTCAAAAAACACA  1045

seq1  GCAGTTAAACGCTATTAAATGAAGCTGGGCACCGCCGACATCA-GATCTG  1097
      |||||||||||||| |||||| |||||| |||  | ||| ||| ||||||
seq2  GCAGTTAAACGCTAATAAATG-AGCTGGTCACGTCGGACCTCAGGATCTG  1094

seq1  TAAGTTTATTTTGCTCAATGTACGA  1122
      ||   ||||||||||||||||||||
seq2  TA--GTTATTTTGCTCAATGTACGA  1117