BAC Information

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BAC

Clone NameB6Ng01-304I17
Chromosome5 (Build37)
Map Location 123,090,487 - 123,231,920
singlet/doubletdoublet
Overlap geneP2rx7, P2rx4, Camkk2
Upstream geneAcad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81
Downstream geneAnapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304I17.bB6Ng01-304I17.g
ACCGA098074GA098075
length8201,133
definitionB6Ng01-304I17.b B6Ng01-304I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,231,103 - 123,231,920)(123,090,487 - 123,091,614)
sequence
gaattccacacccctaagccccttaccccataaaaacccctagctgtcga
gccttgtggccgacatccgttatctcctgtgtgagatgcatgtcgtccag
agctccgtcattaaacgttctcatgtaattacatcaagagatggtccttc
ctgatttttttgggtgcacgccgaatcgggagttgagtgggggtttcccc
actaggttctaacaccctgtcactcatgacccccaaagccccgccctgcc
tacttaacctactataaatttggggttggggaggggtctacaatacagaa
aaatacagaactatgtacccactattcagcatcaactatttttgcaatct
attttacaaccatttatagaggaaataaaacagctatgtcatcttcctat
actccctgtcccattctctgccctcaattccttcctttactcatctatca
ttattgttttgtctttttggaagcagggtctatatagacctggaacttcc
taccaccttgaactcatggagatcctcctgccccatgcctcccaaatact
ggggttaaaagtgcccgacccaccttcctttatttttattccatgtgtat
gggtgtttttcctcaatgcatgtctgcgaaccacatgcatgctctgcctg
agaaggccagaagagggcgtcagatcccctggaactggggttccagaggt
tgtgacccatcatgtggatactgggaatcgaacctagatcctttgcaaga
gcagctggtgggtgctcttaactacggagccatctctccagcccgctttc
ctttttttgggggggagggg
gaattccctggctcactattggataggtgggaccaagacattacttttgg
ccaatcagtgacacacaggagagagagctttgtttctaggtcagcattta
attagctgctgtgagaatccagagttctcattcaagagttcaagatgacg
ctactctgttagcgatggatgtgtaacacggatgagaaatagaaccgcta
ctttaagccacgagggagctgtgttacggctgcatagtctgtcctgtgct
gactgacaggaacacagacgctccgaggaagggtcgatggagctgatgtg
tgagaagaagaagtcactgaaggataagagtcccagaggccaatgagaaa
ttaggacagcgtgagaccaggagcatcacagatgtcaggggaggagttag
tccaagaaatagagagtaagtggccgtgctagtgatcgagtcccagaggc
caagcaacataaggaatacatatatgtccagtaaaactggccactgagga
gtatgggtaatcttattaataacagctctctgtggtttgaataggaacgg
cccccacagacttgaatgcttggtcaccagggcatggcactattagggag
tcggggtgggctttgaggtctcaaatgctcaaggcaggcctagtcagtca
gtctgtctgtctgtctccctttctccctccccgttctctctctcttcctg
ctgcccactgatccaaatgtagaattctgagcttctccagtaccatgcct
gcttgcacgccatgatgataatggactaagcctccaaacccataagccat
ctccaattaaataacggctttcctttataagagttgctgtggccatggtg
tctctccacagcaatggaacgcagactaagacaacagccttcacggactg
ttatagtagtgaaagaaagagccccaagggatataccatagaagatccat
ggggaaagctcagcaggggatgcaagagaagcccatataccgatctgctt
gttctggcaatttctagaagaatgggatcatgagatgtcttctgttgtct
ggctccttcacgtctcctaggctcatcacgctaatagtaggcaacttgct
cctccacttccttggcatgactggattactgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123231103_123231920
seq2: B6Ng01-304I17.b_47_866 (reverse)

seq1  CCCCTCCCCCCCAAAAAA--GGAAGCGGGCTGGAGAGATGGCTCCGTAGT  48
      ||||||||||||||||||  | ||||||||||||||||||||||||||||
seq2  CCCCTCCCCCCCAAAAAAAGGAAAGCGGGCTGGAGAGATGGCTCCGTAGT  50

seq1  TAAGAGCACCCACCAGCTGCTCTTGCAAAGGATCTAGGTTCGATTCCCAG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACCCACCAGCTGCTCTTGCAAAGGATCTAGGTTCGATTCCCAG  100

seq1  TATCCACATGATGGGTCACAACCTCTGGAACCCCAGTTCCAGGGGATCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACATGATGGGTCACAACCTCTGGAACCCCAGTTCCAGGGGATCTG  150

seq1  ACGCCCTCTTCTGGCCTTCTCAGGCAGAGCATGCATGTGGTTCGCAGACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTCTTCTGGCCTTCTCAGGCAGAGCATGCATGTGGTTCGCAGACA  200

seq1  TGCATTGAGGAAAAACACCCATACACATGGAATAAAAATAAAGGAAGGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGAGGAAAAACACCCATACACATGGAATAAAAATAAAGGAAGGTG  250

seq1  GGTCGGGCACTTTTAACCCCAGTATTTGGGAGGCATGGGGCAGGAGGATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGGCACTTTTAACCCCAGTATTTGGGAGGCATGGGGCAGGAGGATC  300

seq1  TCCATGAGTTCAAGGTGGTAGGAAGTTCCAGGTCTATATAGACCCTGCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGTTCAAGGTGGTAGGAAGTTCCAGGTCTATATAGACCCTGCTT  350

seq1  CCAAAAAGACAAAACAATAATGATAGATGAGTAAAGGAAGGAATTGAGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGACAAAACAATAATGATAGATGAGTAAAGGAAGGAATTGAGGG  400

seq1  CAGAGAATGGGACAGGGAGTATAGGAAGATGACATAGCTGTTTTATTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATGGGACAGGGAGTATAGGAAGATGACATAGCTGTTTTATTTCC  450

seq1  TCTATAAATGGTTGTAAAATAGATTGCAAAAATAGTTGATGCTGAATAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAATGGTTGTAAAATAGATTGCAAAAATAGTTGATGCTGAATAGT  500

seq1  GGGTACATAGTTCTGTATTTTTCTGTATTGTAGACCCCTCCCCAACCCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACATAGTTCTGTATTTTTCTGTATTGTAGACCCCTCCCCAACCCCA  550

seq1  AATTTATAGTAGGTTAAGTAGGCAGGGCGGGGCTTTGGGGGTCATGAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAGTAGGTTAAGTAGGCAGGGCGGGGCTTTGGGGGTCATGAGTG  600

seq1  ACAGGGTGTTAGAACCTAGTGGGGAAACCCCCACTCAACTCCCGATTCGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGTTAGAACCTAGTGGGGAAACCCCCACTCAACTCCCGATTCGG  650

seq1  CGTGCACCCAAAAAAATCAGGAAGGACCATCTCTTGATGTAATTACATGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACCCAAAAAAATCAGGAAGGACCATCTCTTGATGTAATTACATGA  700

seq1  GAACGTTTAATGACGGAGCTCTGGACGACATGCATCTCACACAGGAGATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTTTAATGACGGAGCTCTGGACGACATGCATCTCACACAGGAGATA  750

seq1  ACGGATGTCGGCCACAAGGCTCGACAGCTAGGGGTTTTTATGGGGTAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATGTCGGCCACAAGGCTCGACAGCTAGGGGTTTTTATGGGGTAAGG  800

seq1  GGCTTAGGGGTGTGGAATTC  818
      ||||||||||||||||||||
seq2  GGCTTAGGGGTGTGGAATTC  820

seq1: chr5_123090487_123091614
seq2: B6Ng01-304I17.g_69_1201

seq1  GAATTCCCTGGCTCACTATTGGATAGGTGGGACCAAGACATTACTTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGCTCACTATTGGATAGGTGGGACCAAGACATTACTTTTGG  50

seq1  CCAATCAGTGACACACAGGAGAGAGAGCTTTGTTTCTAGGTCAGCATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGTGACACACAGGAGAGAGAGCTTTGTTTCTAGGTCAGCATTTA  100

seq1  ATTAGCTGCTGTGAGAATCCAGAGTTCTCATTCAAGAGTTCAAGATGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGCTGTGAGAATCCAGAGTTCTCATTCAAGAGTTCAAGATGACG  150

seq1  CTACTCTGTTAGCGATGGATGTGTAACACGGATGAGAAATAGAACCGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGTTAGCGATGGATGTGTAACACGGATGAGAAATAGAACCGCTA  200

seq1  CTTTAAGCCACGAGGGAGCTGTGTTACGGCTGCATAGTCTGTCCTGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGCCACGAGGGAGCTGTGTTACGGCTGCATAGTCTGTCCTGTGCT  250

seq1  GACTGACAGGAACACAGACGCTCCGAGGAAGGGTCGATGGAGCTGATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACAGGAACACAGACGCTCCGAGGAAGGGTCGATGGAGCTGATGTG  300

seq1  TGAGAAGAAGAAGTCACTGAAGGATAAGAGTCCCAGAGGCCAATGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAAGAAGTCACTGAAGGATAAGAGTCCCAGAGGCCAATGAGAAA  350

seq1  TTAGGACAGCGTGAGACCAGGAGCATCACAGATGTCAGGGGAGGAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACAGCGTGAGACCAGGAGCATCACAGATGTCAGGGGAGGAGTTAG  400

seq1  TCCAAGAAATAGAGAGTAAGTGGCCGTGCTAGTGATCGAGTCCCAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAATAGAGAGTAAGTGGCCGTGCTAGTGATCGAGTCCCAGAGGC  450

seq1  CAAGCAACATAAGGAATACATATATGTCCAGTAAAACTGGCCACTGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACATAAGGAATACATATATGTCCAGTAAAACTGGCCACTGAGGA  500

seq1  GTATGGGTAATCTTATTAATAACAGCTCTCTGTGGTTTGAATAGGAACGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGTAATCTTATTAATAACAGCTCTCTGTGGTTTGAATAGGAACGG  550

seq1  CCCCCACAGACTTGAATGCTTGGTCACCAGGGCATGGCACTATTAGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAGACTTGAATGCTTGGTCACCAGGGCATGGCACTATTAGGGAG  600

seq1  TCGGGGTGGGCTTTGAGGTCTCAAATGCTCAAGGCAGGCCTAGTCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTGGGCTTTGAGGTCTCAAATGCTCAAGGCAGGCCTAGTCAGTCA  650

seq1  GTCTGTCTGTCTGTCTCCCTTTCTCCCTCCCCGTTCTCTCTCTCTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGTCTGTCTCCCTTTCTCCCTCCCCGTTCTCTCTCTCTTCCTG  700

seq1  CTGCCCACTGATCCAAATGTAGAATTCTGAGCTTCTCCAGTACCATGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACTGATCCAAATGTAGAATTCTGAGCTTCTCCAGTACCATGCCT  750

seq1  GCTTGCACGCCATGATGATAATGGACTAAGCCTCCAAACCCATAAGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACGCCATGATGATAATGGACTAAGCCTCCAAACCCATAAGCCAT  800

seq1  CTCCAATTAAATAACGGCTTTCCTTTATAAGAGTTGCTGTGGCCATGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTAAATAACGGCTTTCCTTTATAAGAGTTGCTGTGGCCATGGTG  850

seq1  TCTCTCCACAGCAATGGAACGCAGACTAAGACAACAGCCTTCACGGACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCACAGCAATGGAACGCAGACTAAGACAACAGCCTTCACGGACTG  900

seq1  TTATAGTAGTGAAAGAAAGAGCCCCAAGGGATATACCATAGAAGATCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTAGTGAAAGAAAGAGCCCCAAGGGATATACCATAGAAGATCCAT  950

seq1  GGGAAAGGCTCAGCAGGGGATGCAAGAGAAG-CCATATACCGATCTGCTT  999
      ||| || |||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGGAAAGCTCAGCAGGGGATGCAAGAGAAGCCCATATACCGATCTGCTT  1000

seq1  GTTCTGGGCATTTCTAGA--GATGGGATCATGAGATGTCCTTCTG-TGTC  1046
      |||||||  |||||||||   ||||||||||||||||| |||||| ||||
seq2  GTTCTGGCAATTTCTAGAAGAATGGGATCATGAGATGT-CTTCTGTTGTC  1049

seq1  TGGCTCCTTTCACGTCTCCCTAGGCTCATCCACGCT-ATAGTAAGC-ACC  1094
      ||||||| ||||||||| ||||||||||| |||||| |||||| || || 
seq2  TGGCTCC-TTCACGTCT-CCTAGGCTCAT-CACGCTAATAGTAGGCAACT  1096

seq1  TGCTCCT-CAC-TCCTTTGCATGACT-GAGTACTGCT  1128
      ||||||| ||| ||||| |||||||| || |||||||
seq2  TGCTCCTCCACTTCCTTGGCATGACTGGATTACTGCT  1133