BAC Information

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BAC

Clone NameB6Ng01-304N03
Chromosome5 (Build37)
Map Location 148,249,934 - 148,407,135
singlet/doubletdoublet
Overlap genePan3, Flt1
Upstream geneWasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304N03.bB6Ng01-304N03.g
ACCGA098267GA098268
length6971,094
definitionB6Ng01-304N03.b B6Ng01-304N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,406,439 - 148,407,135)(148,249,934 - 148,251,018)
sequence
gaattccagaaagtttccacctaaaaggctttcagctcccccacctccag
tccacagggctccctagttgctaacctccagtcctaacatggctctccat
tctgctgtaactggacagcgtctcctttataccagttatcacaccaggga
cttggcagttcagacagtggccttccctttttgagtcaagttttcctcat
ccaagagtgaggaaagccatggattaatagttactacagcaaaacagtac
aggcaccacaaaagataccctgctttcttacagtttttggtaatcgcctc
tctggggttgaagcaaattactacctgtgtttgatggctcatgttctgaa
aaccacaagggcttgtaatggtcgtatacccgtataagagctaccaggaa
atgctctggccagcacggaagtctgagaaacgaccaagtgcttattcttg
agatccgaggcatcgtcacaccaacagtagtcaccgacatacatccattt
tacagagaatgtagggaatgacctcagtgacaagaaagagggcttgaaac
atcttagtcacggaacagagagacgctccctgggtttggtgttttctccc
tctgggagactctatggccagtgggaatggccactttccttcactgaatg
ctctagaagcttagacccatcttgaaggatgtggtggggtgggggtg
gaattcattggtactgggctgagaatcccacagtgtgattttcagcgcta
tgacttaagaacagttgtgaccttgaccttgggctgctcatttgctccgt
atgaaaatacagttcttttcctgtaaaagaggagaatggagtatgctgca
catggcctgaaagcttttctacgacagacagtgctgtaaatgtacttgtg
tttaagaagacaagcctttcctgtttcctaaagaatttctccttctcaac
ttgaaactggccagcacttgagcatcagtgtgtgtggatgaagggtctgc
tctccttgattctgtgttaatcgatatgcagatacccgtcctctaccaga
agacctcctcctccatgaagcctggttgtcatgctgttgtgttgccaagg
ttgaccttgagtttctgctcctctttcacctctgtagtgcctgggtgcca
ctcaactgtgcgggattatgcagtggctgggatgaaagggatgaaagcag
ggttccctgcacgatactgtgcactgtccagctgagctatggtccccagc
tcctctctttttctgatttctctttggtatatttttcttgcttttttttt
tttttttaatcagtattgcttctattgttctaaaggtagttttactgtat
attcagaatgagaagagtcttatctgaatgatagtttaggagttaaaagt
gtaaaacatacagattgaaattttgtttctttattttggagagagggtct
cttgttagcccaagctggtctggaaactcactatgtagcagaccttgaac
ttctgaaccacctacctccaccttctacgtgctgagactatagatgtatg
tccctccacacctgatttttgaggtattgggatttaaacctggacttcct
gcactctaggcaagtcctttaacaaaaagatctagggtcctgaccctaaa
aattaaaccaagataaagagcacaagagagtagggaaggctcctccgttt
tcccgggaaggattgtggcgtagaggacaattgggctactatgagttcag
tggtcctgttgcctaaccacagaaatgcatgtcttccatattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148406439_148407135
seq2: B6Ng01-304N03.b_46_742 (reverse)

seq1  CACCCCCACCCCACCACATCCTTCAAGATGGGTCTAAGCTTCTAGAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACCCCACCACATCCTTCAAGATGGGTCTAAGCTTCTAGAGCAT  50

seq1  TCAGTGAAGGAAAGTGGCCATTCCCACTGGCCATAGAGTCTCCCAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAGGAAAGTGGCCATTCCCACTGGCCATAGAGTCTCCCAGAGGG  100

seq1  AGAAAACACCAAACCCAGGGAGCGTCTCTCTGTTCCGTGACTAAGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACCAAACCCAGGGAGCGTCTCTCTGTTCCGTGACTAAGATGTT  150

seq1  TCAAGCCCTCTTTCTTGTCACTGAGGTCATTCCCTACATTCTCTGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCCTCTTTCTTGTCACTGAGGTCATTCCCTACATTCTCTGTAAAA  200

seq1  TGGATGTATGTCGGTGACTACTGTTGGTGTGACGATGCCTCGGATCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTATGTCGGTGACTACTGTTGGTGTGACGATGCCTCGGATCTCAA  250

seq1  GAATAAGCACTTGGTCGTTTCTCAGACTTCCGTGCTGGCCAGAGCATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCACTTGGTCGTTTCTCAGACTTCCGTGCTGGCCAGAGCATTTC  300

seq1  CTGGTAGCTCTTATACGGGTATACGACCATTACAAGCCCTTGTGGTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGCTCTTATACGGGTATACGACCATTACAAGCCCTTGTGGTTTTC  350

seq1  AGAACATGAGCCATCAAACACAGGTAGTAATTTGCTTCAACCCCAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGAGCCATCAAACACAGGTAGTAATTTGCTTCAACCCCAGAGAG  400

seq1  GCGATTACCAAAAACTGTAAGAAAGCAGGGTATCTTTTGTGGTGCCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTACCAAAAACTGTAAGAAAGCAGGGTATCTTTTGTGGTGCCTGTA  450

seq1  CTGTTTTGCTGTAGTAACTATTAATCCATGGCTTTCCTCACTCTTGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGCTGTAGTAACTATTAATCCATGGCTTTCCTCACTCTTGGATG  500

seq1  AGGAAAACTTGACTCAAAAAGGGAAGGCCACTGTCTGAACTGCCAAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACTTGACTCAAAAAGGGAAGGCCACTGTCTGAACTGCCAAGTCC  550

seq1  CTGGTGTGATAACTGGTATAAAGGAGACGCTGTCCAGTTACAGCAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGATAACTGGTATAAAGGAGACGCTGTCCAGTTACAGCAGAATG  600

seq1  GAGAGCCATGTTAGGACTGGAGGTTAGCAACTAGGGAGCCCTGTGGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCATGTTAGGACTGGAGGTTAGCAACTAGGGAGCCCTGTGGACTG  650

seq1  GAGGTGGGGGAGCTGAAAGCCTTTTAGGTGGAAACTTTCTGGAATTC  697
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGGGAGCTGAAAGCCTTTTAGGTGGAAACTTTCTGGAATTC  697

seq1: chr5_148249934_148251018
seq2: B6Ng01-304N03.g_70_1163

seq1  GAATTCATTGGTACTGGGCTGAGAATCCCACAGTGTGATTTTCAGCGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTACTGGGCTGAGAATCCCACAGTGTGATTTTCAGCGCTA  50

seq1  TGACTTAAGAACAGTTGTGACCTTGACCTTGGGCTGCTCATTTGCTCCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAAGAACAGTTGTGACCTTGACCTTGGGCTGCTCATTTGCTCCGT  100

seq1  ATGAAAATACAGTTCTTTTCCTGTAAAAGAGGAGAATGGAGTATGCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATACAGTTCTTTTCCTGTAAAAGAGGAGAATGGAGTATGCTGCA  150

seq1  CATGGCCTGAAAGCTTTTCTACGACAGACAGTGCTGTAAATGTACTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTGAAAGCTTTTCTACGACAGACAGTGCTGTAAATGTACTTGTG  200

seq1  TTTAAGAAGACAAGCCTTTCCTGTTTCCTAAAGAATTTCTCCTTCTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAGACAAGCCTTTCCTGTTTCCTAAAGAATTTCTCCTTCTCAAC  250

seq1  TTGAAACTGGCCAGCACTTGAGCATCAGTGTGTGTGGATGAAGGGTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTGGCCAGCACTTGAGCATCAGTGTGTGTGGATGAAGGGTCTGC  300

seq1  TCTCCTTGATTCTGTGTTAATCGATATGCAGATACCCGTCCTCTACCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGATTCTGTGTTAATCGATATGCAGATACCCGTCCTCTACCAGA  350

seq1  AGACCTCCTCCTCCATGAAGCCTGGTTGTCATGCTGTTGTGTTGCCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCTCCTCCATGAAGCCTGGTTGTCATGCTGTTGTGTTGCCAAGG  400

seq1  TTGACCTTGAGTTTCTGCTCCTCTTTCACCTCTGTAGTGCCTGGGTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTGAGTTTCTGCTCCTCTTTCACCTCTGTAGTGCCTGGGTGCCA  450

seq1  CTCAACTGTGCGGGATTATGCAGTGGCTGGGATGAAAGGGATGAAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTGTGCGGGATTATGCAGTGGCTGGGATGAAAGGGATGAAAGCAG  500

seq1  GGTTCCCTGCACGATACTGTGCACTGTCCAGCTGAGCTATGGTCCCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTGCACGATACTGTGCACTGTCCAGCTGAGCTATGGTCCCCAGC  550

seq1  TCCTCTCTTTTTCTGATTTCTCTTTGGTATATTTTTCTTGCTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTTTTCTGATTTCTCTTTGGTATATTTTTCTTGCTTTTTTTTT  600

seq1  TTTTTTTAATCAGTATTGCTTCTATTGTTCTAAAGGTAGTTTTACTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATCAGTATTGCTTCTATTGTTCTAAAGGTAGTTTTACTGTAT  650

seq1  ATTCAGAATGAGAAGAGTCTTATCTGAATGATAGTTTAGGAGTTAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAATGAGAAGAGTCTTATCTGAATGATAGTTTAGGAGTTAAAAGT  700

seq1  GTAAAACATACAGATTGAAATTTTGTTTCTTTATTTTGGAGAGAGGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACATACAGATTGAAATTTTGTTTCTTTATTTTGGAGAGAGGGTCT  750

seq1  CTTG-TAGCCCAAGCTGGTCTGG-AACTCACTATGTAGCAGACCTTGAAC  798
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGTTAGCCCAAGCTGGTCTGGAAACTCACTATGTAGCAGACCTTGAAC  800

seq1  TTCTGAACCACCTACCTCCACCTTCTACGTGCTGAGACTATAGATGTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACCACCTACCTCCACCTTCTACGTGCTGAGACTATAGATGTATG  850

seq1  TCCCTCCACACCTGATTTTTGAGGTATTGGGAATTAAACCTGGACTTCCT  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCCTCCACACCTGATTTTTGAGGTATTGGGATTTAAACCTGGACTTCCT  900

seq1  GCACTCTAGGCAAGTCCTTTAAC-AAAAGATCTAGGGTTCTGACCCTAAA  947
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GCACTCTAGGCAAGTCCTTTAACAAAAAGATCTAGGGTCCTGACCCTAAA  950

seq1  AATTTAAACAAGATAAAGAGCACAAGAGAG-AGGGAAGGCT-CTCCG-TT  994
      |||| || |||||||||||||||||||||| |||||||||| ||||| ||
seq2  AATTAAACCAAGATAAAGAGCACAAGAGAGTAGGGAAGGCTCCTCCGTTT  1000

seq1  TCCCGGGAAGGATGTTGGCGTAGAGGACA--TTGGCTACTATGAGTTTCA  1042
      |||||||||||||  ||||||||||||||  | |||||||||||| ||||
seq2  TCCCGGGAAGGATTGTGGCGTAGAGGACAATTGGGCTACTATGAG-TTCA  1049

seq1  GT-GTGCTGTTGCCTAAACCACAG--ATGCATGGTCTT-CATATTCA  1085
      || || ||||||||| ||||||||  |||||| ||||| ||||||||
seq2  GTGGTCCTGTTGCCT-AACCACAGAAATGCAT-GTCTTCCATATTCA  1094