BAC Information

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BAC

Clone NameB6Ng01-306E21
Chromosome5 (Build37)
Map Location 143,709,879 - 143,870,816
singlet/doubletdoublet
Overlap geneFscn1, 2810055G22Rik, LOC667809
Upstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb
Downstream geneOlfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306E21.bB6Ng01-306E21.g
ACCGA099377GA099378
length1191,096
definitionB6Ng01-306E21.b B6Ng01-306E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,709,879 - 143,709,997)(143,869,710 - 143,870,816)
sequence
catggtgtgcagctgaagtcattttccgtgagatgggaagtggaggcagg
agagccgcaaagaaggtctgacgtctcctggctggtttgaaggattcaaa
gtgtgtgtgtgtgtgtgtg
gaattcagcctgagacgaatgcagttaaagtttggtctgacaagggacca
acacattgctagagagtgaggaaagaactatcaggtgacgctacttgggt
cagcaaaagcctgatgagctgtgatttttgtactatggtaaggacttggg
gactgtcatggtgacatgtaatttaaaaaacagccagacatgatggtaca
tgcctttaaccccagcagagtccagtgtagtctacatagtaagaccttgt
ctggaaaacaaaacaaaaacaaaacaacccttagtgctgtatgaagaggt
caaagtatggagcctagaaggcagaacttgagctaaaagaacaaagtgtg
ataagctcctagacaattgatttgtaagatctttgaggattagggctgta
gctcatgagtatgacacagcacctgccaggccctgggttcaattccagca
ctgtaccccactcaaaaacaaatcaaaggtgggtgtgttcacttacctgc
ttgcatttcagaatctattttctaatggctaagaaaaattttagcatttt
atgttactttttctaaaaccctttcttgtagtgcaggctggcctcaaact
cgcaatgtaacttaggatgactgtgaacagtacactgtttattctgcctc
ttctgagtgctggaatcaaagatctgtaccaccaaccaggtttatgtggt
acttataattgaactcagggcttcctgcgtgttgggcagcattctgtgag
ccacaacaccccagcccttatgttaaaatcttaaagctaacgttggggct
ggaaagaatggctccgctattaagaagaacagcagcagcagctctttagt
agctgatctggatttgggttctcagcacccatggtgggggcccataaaca
tctgtaacagcagttccaggggttttcagtgcctcctttgggcgtctgta
ggcactagtacacatacgcacttacatacgtatttgcagacaacattgca
taaataaaataaataaaccttttcaaaatattagctaactaacctgactg
attaattttggtgtgatctggtgtagaaaccatgataggtaggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_143709879_143709997
seq2: B6Ng01-306E21.b_50_168

seq1  CATGGTGTGCAGCTGAAGTCATTTTCCGTGAGATGGGAAGTGGAGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTGCAGCTGAAGTCATTTTCCGTGAGATGGGAAGTGGAGGCAGG  50

seq1  AGAGCCGCAAAGAAGGTCTGACGTCTCCTGGCTGGTTTGAAGGATTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCGCAAAGAAGGTCTGACGTCTCCTGGCTGGTTTGAAGGATTCAAA  100

seq1  GTGTGTGTGTGTGTGTGTG  119
      |||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTG  119

seq1: chr5_143869710_143870816
seq2: B6Ng01-306E21.g_66_1161 (reverse)

seq1  AATCCTA-CTATCATTGTTTTTCTACACTAGGATTCACACCAAAAATTAA  49
      ||||||| ||||||| |  ||||||||| ||   ||||||| ||||||||
seq2  AATCCTACCTATCATGG--TTTCTACACCAG--ATCACACC-AAAATTAA  45

seq1  ATTCAGTCAGGTTAGTTAGCTAAATATTTTGAAAAGTTTTATTTATTTTT  99
        ||||||||||||||||||| |||||||||||||| |||||||||||| 
seq2  --TCAGTCAGGTTAGTTAGCT-AATATTTTGAAAAGGTTTATTTATTTT-  91

seq1  AATTTATGCAAATGTTTGTCTGCAAATACGTATGTAAGTGCGTTATGTGT  149
       |||||||| |||| ||||||||||||||||||||||||||| |||||||
seq2  -ATTTATGC-AATG-TTGTCTGCAAATACGTATGTAAGTGCG-TATGTGT  137

seq1  ACCTAGTGCCTACAGACGCCCAAAGGAGGCACTGAAAA-CCCTGGAACTG  198
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  A-CTAGTGCCTACAGACGCCCAAAGGAGGCACTGAAAACCCCTGGAACTG  186

seq1  CTGTTACAGATGTTTATGGGCCCC--ACATGGGTGCTGAGAACCCAAATC  246
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  CTGTTACAGATGTTTATGGGCCCCCACCATGGGTGCTGAGAACCCAAATC  236

seq1  CAGATCAGCTACTAAAGAGCTGCTGCTGCTGTTCTTCTTTAATAGCGGAG  296
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGATCAGCTACTAAAGAGCTGCTGCTGCTGTTCTTC-TTAATAGCGGAG  285

seq1  CCATTCTTTCCAGCCCCAACGTTAGCTTTAAGATTTTAACATAAGGGCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTTCCAGCCCCAACGTTAGCTTTAAGATTTTAACATAAGGGCTG  335

seq1  GGGTGTTGTGGCTCACAGAATGCTGCCCAACACGCAGGAAGCCCTGAGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGTGGCTCACAGAATGCTGCCCAACACGCAGGAAGCCCTGAGTT  385

seq1  CAATTATAAGTACCACATAAACCTGGTTGGTGGTACAGATCTTTGATTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAAGTACCACATAAACCTGGTTGGTGGTACAGATCTTTGATTCC  435

seq1  AGCACTCAGAAGAGGCAGAATAAACAGTGTACTGTTCACAGTCATCCTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAGAAGAGGCAGAATAAACAGTGTACTGTTCACAGTCATCCTAA  485

seq1  GTTACATTGCGAGTTTGAGGCCAGCCTGCACTACAAGAAAGGGTTTTAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTGCGAGTTTGAGGCCAGCCTGCACTACAAGAAAGGGTTTTAGA  535

seq1  AAAAGTAACATAAAATGCTAAAATTTTTCTTAGCCATTAGAAAATAGATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAACATAAAATGCTAAAATTTTTCTTAGCCATTAGAAAATAGATT  585

seq1  CTGAAATGCAAGCAGGTAAGTGAACACACCCACCTTTGATTTGTTTTTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGCAAGCAGGTAAGTGAACACACCCACCTTTGATTTGTTTTTGA  635

seq1  GTGGGGTACAGTGCTGGAATTGAACCCAGGGCCTGGCAGGTGCTGTGTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTACAGTGCTGGAATTGAACCCAGGGCCTGGCAGGTGCTGTGTCA  685

seq1  TACTCATGAGCTACAGCCCTAATCCTCAAAGATCTTACAAATCAATTGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGAGCTACAGCCCTAATCCTCAAAGATCTTACAAATCAATTGTC  735

seq1  TAGGAGCTTATCACACTTTGTTCTTTTAGCTCAAGTTCTGCCTTCTAGGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTTATCACACTTTGTTCTTTTAGCTCAAGTTCTGCCTTCTAGGC  785

seq1  TCCATACTTTGACCTCTTCATACAGCACTAAGGGTTGTTTTGTTTTTGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTTTGACCTCTTCATACAGCACTAAGGGTTGTTTTGTTTTTGTT  835

seq1  TTGTTTTCCAGACAAGGTCTTACTATGTAGACTACACTGGACTCTGCTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCCAGACAAGGTCTTACTATGTAGACTACACTGGACTCTGCTGG  885

seq1  GGTTAAAGGCATGTACCATCATGTCTGGCTGTTTTTTAAATTACATGTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAGGCATGTACCATCATGTCTGGCTGTTTTTTAAATTACATGTCA  935

seq1  CCATGACAGTCCCCAAGTCCTTACCATAGTACAAAAATCACAGCTCATCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACAGTCCCCAAGTCCTTACCATAGTACAAAAATCACAGCTCATCA  985

seq1  GGCTTTTGCTGACCCAAGTAGCGTCACCTGATAGTTCTTTCCTCACTCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTGCTGACCCAAGTAGCGTCACCTGATAGTTCTTTCCTCACTCTC  1035

seq1  TAGCAATGTGTTGGTCCCTTGTCAGACCAAACTTTAACTGCATTCGTCTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGTGTTGGTCCCTTGTCAGACCAAACTTTAACTGCATTCGTCTC  1085

seq1  AGGCTGAATTC  1107
      |||||||||||
seq2  AGGCTGAATTC  1096