BAC Information

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BAC

Clone NameB6Ng01-306K01
Chromosome5 (Build37)
Map Location 58,858,923 - 58,860,112
singlet/doubletsinglet
Overlap geneLOC100041385
Upstream geneEG666465, Pcdh7
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306K01.bB6Ng01-306K01.g
ACCGA099606GA099607
length1,1761,176
definitionB6Ng01-306K01.b B6Ng01-306K01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcctactttacttgccatcaacttctctaaaagttcacatagt
caatatgagctagtttctaggagtagattgacagtaaggaggtagaaagc
agggataacaactatacctttacagagggaaccatggatgctgtccagta
actgttatagaatgcttttcttccacttaaatttcattagaacaattacg
gtctgagcaaagacagaatgacaggtaaatatgagggacattgtaagtat
aaggagcttgaatttacttaacacatagttctcagactcaaatttacatt
ccttgccagataacatttaagaatcctgataaaaatgacaaagccagagt
tctgaatggggtaagagcatttatacatacaaaatgttttgttctaaaat
ctttaccaattgaccttatgtacccttttttttcagctgcaaacttgacc
agtatacctataatccaccttccaatttcttttaatgaagacaagtcatt
tgtaatagatatgaataacccagatcacatatattcaacttaatttttaa
acactatcaaatctttgaaaggattataaattttatcccttatgcaatgt
atgcaaagaactagatcatatatgtatagtcattcttaatacatttaagg
atgaatctaaaaggcaggatttacttgtggagcaaaagtttgccttatta
taaagccttctctcagttctttgttttgtgttgtatgtcaattctttcta
tgatgttcagaagcacttgaaaatgctgtatagaattttatatttaatct
atctgtctatgagaactccccagccttaaccacctgggaaagttcatact
caaaaaggataaaaagcatggaatctgtgtgaagaattgtattgaggaat
tcacaaagtcaatgtgaaataaaatttgggatatgtaaaggactgggaat
ctccaccacttacaaaagaagcaattcctaacttataccagcttctagcc
acataagcaagacttctcataatgtaaataactatacctattttcaaaaa
gccaaattattataaacttattcatcacaattctaaccaaaagtacccaa
atatcttgtctgattggaacttgtactcgaatggatacagctataattca
catgttcagactactcactaccgaac
gaattctcacctgaggaataccgaatggctgagaagcacctaaaaaaaat
gtttagcatccttagtcatcagggaaatacaaatcaaaacaaacctgaga
ttccacttcacaccagtcagatggctaagataaaaaattcaggtgacagc
agatgctggggaggatgtggagaaagaggaacactcctctattgttggtg
ggattgcaagcttgtacaaacactctggaaatcagtctggtggttcctta
gaaaactggatatagtactactggaggatcctgcaatacctctcctgggc
atatatccagaagatattccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactattcagctattaaaaagaatgaatttatgaaattcctagacaa
atggatggacctggagggtatcatcatgaatgagttaacccaatcacaaa
ggaactcacacaatatatactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacgcatgaaattcaa
gaataacgaagaccaaagtgtggacactttgccccttcttagaattagga
aaaaaacacccatggaaggagttacagagacaaagcttggagctgtgtca
aaaggatggatcatctagagcctgccatatccagggttccataccataat
cagcttccaaacactgacaccattgcataaactagcaagattttgcttaa
agtacccaggatatagctatgtcttgtgagactatgccggggcctagcaa
acacagaagtggatgctcacagtcaactattggatggatcacagggcccc
cagtggaggagctagagaaagtacacaagaagctaatggatctgcaaccc
tatagggtagaacaacattatgactaccagtaccccagagctctttgacc
tctagcctgcatatgtatcaaaaagatggccctagttcagtcaatcactg
taagaagaggtccaatgacttggccttaacttcgtatgtttccagttcca
aggtatcacgctctcaggagttccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58858923_58860112
seq2: B6Ng01-306K01.b_47_1222

seq1  GAATTCCTCCTACTTTACTTGCCATCAACTTCTCTAAAAGTTCACATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTACTTTACTTGCCATCAACTTCTCTAAAAGTTCACATAGT  50

seq1  CAATATGAGCTAGTTTCTAGGAGTAGATTGACAGTAAGGAGGTAGAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAGCTAGTTTCTAGGAGTAGATTGACAGTAAGGAGGTAGAAAGC  100

seq1  AGGGATAACAACTATACCTTTACAGAGGGAACCATGGATGCTGTCCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAACAACTATACCTTTACAGAGGGAACCATGGATGCTGTCCAGTA  150

seq1  ACTGTTATAGAATGCTTTTCTTCCACTTAAATTTCATTAGAACAATTACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATAGAATGCTTTTCTTCCACTTAAATTTCATTAGAACAATTACG  200

seq1  GTCTGAGCAAAGACAGAATGACAGGTAAATATGAGGGACATTGTAAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCAAAGACAGAATGACAGGTAAATATGAGGGACATTGTAAGTAT  250

seq1  AAGGAGCTTGAATTTACTTAACACATAGTTCTCAGACTCAAATTTACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTTGAATTTACTTAACACATAGTTCTCAGACTCAAATTTACATT  300

seq1  CCTTGCCAGATAACATTTAAGAATCCTGATAAAAATGACAAAGCCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCAGATAACATTTAAGAATCCTGATAAAAATGACAAAGCCAGAGT  350

seq1  TCTGAATGGGGTAAGAGCATTTATACATACAAAATGTTTTGTTCTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGGGGTAAGAGCATTTATACATACAAAATGTTTTGTTCTAAAAT  400

seq1  CTTTACCAATTGACCTTATGTACCCTTTTTTTTCAGCTGCAAACTTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCAATTGACCTTATGTACCCTTTTTTTTCAGCTGCAAACTTGACC  450

seq1  AGTATACCTATAATCCACCTTCCAATTTCTTTTAATGAAGACAAGTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACCTATAATCCACCTTCCAATTTCTTTTAATGAAGACAAGTCATT  500

seq1  TGTAATAGATATGAATAACCCAGATCACATATATTCAACTTAATTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGATATGAATAACCCAGATCACATATATTCAACTTAATTTTTAA  550

seq1  ACACTATCAAATCTTTGAAAGGATTATAAATTTTATCCCTTATGCAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATCAAATCTTTGAAAGGATTATAAATTTTATCCCTTATGCAATGT  600

seq1  ATGCAAAGAACTAGATCATATATGTATAGTCATTCTTAATACATTTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGAACTAGATCATATATGTATAGTCATTCTTAATACATTTAAGG  650

seq1  ATGAATCTAAAAGGCAGGATTTACTTGTGGAGCAAAAGTTTGCCTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTAAAAGGCAGGATTTACTTGTGGAGCAAAAGTTTGCCTTATTA  700

seq1  TAAAGCCTTCTCTCAGTTCTTTGTTTTGTGTTGTATGTCAATTCTTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTTCTCTCAGTTCTTTGTTTTGTGTTGTATGTCAATTCTTTCTA  750

seq1  TGATGTTCAGAAGCACTTGAAAATGCTGTATAGAATTTTATATTTAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTCAGAAGCACTTGAAAATGCTGTATAGAATTTTATATTTAATCT  800

seq1  ATCTGTCTATGAGAACTCCCCAGCCTTAACCACCTGGGAAAGTTCATACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTATGAGAACTCCCCAGCCTTAACCACCTGGGAAAGTTCATACT  850

seq1  CAAAAAAGGATAAAAAGCATGGAATCTGTGTGAAGAATTGTATTGAGGAA  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAAAAGGATAAAAAGCATGGAATCTGTGTGAAGAATTGTATTGAGGAA  899

seq1  TTCACAAAGTCAATGTGAAAATAAAAATTGGGATATGTAAAGGACTGGGA  950
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TTCACAAAGTCAATGTG-AAATAAAATTTGGGATATGTAAAGGACTGGGA  948

seq1  ATCTCCACCACTTACAAAAAGAAGCAATTCCTAACTATAACCAAGCTTCT  1000
      ||||||||||||||| |||||||||||||||||||| ||  | |||||||
seq2  ATCTCCACCACTTAC-AAAAGAAGCAATTCCTAACT-TATACCAGCTTCT  996

seq1  AGCCACATAAGCAAGACTTCTCATAATGTAAAATAACTATAACCTA-TGT  1049
      ||||||||||||||||||||||||||||| |||||||||| ||||| | |
seq2  AGCCACATAAGCAAGACTTCTCATAATGT-AAATAACTAT-ACCTATTTT  1044

seq1  CAAAAAGCAAAATAATTATAAAACTATTCATCACAATTCTAAACAAAAAT  1099
      |||||||| |||| ||||||||  |||||||||||||||||| ||||| |
seq2  CAAAAAGCCAAATTATTATAAACTTATTCATCACAATTCTAACCAAAAGT  1094

seq1  TAACACAAATATC-TGTCTGAGTTTGACTTGGTACTCAGAATGGTATCAA  1148
        || |||||||| ||||||| || ||  | |||||| |||||| ||  |
seq2  --ACCCAAATATCTTGTCTGA-TTGGAACTTGTACTC-GAATGG-ATACA  1139

seq1  GTTTAATAATATCTACATGTCTCAGACTACTCACTACAGAAC  1190
      | |  ||||| || |||||| |||||||||||||||| ||||
seq2  GCT--ATAAT-TC-ACATGT-TCAGACTACTCACTACCGAAC  1176