BAC Information

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BAC

Clone NameB6Ng01-306K23
Chromosome5 (Build37)
Map Location 57,883,647 - 57,960,901
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721
Downstream geneEG666465, Pcdh7, LOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306K23.bB6Ng01-306K23.g
ACCGA099650GA099651
length1,1561,122
definitionB6Ng01-306K23.b B6Ng01-306K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,883,647 - 57,884,801)(57,959,764 - 57,960,901)
sequence
gaattctttgttcagttctgagccccatttattattggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctatgcccatatctttaggttaaaatttcta
ttaaggacatgacatgctgagcatagtacaagatgtcaagtatgtcctta
agcaacattacctccttagagtgagtattaacatagtcatcctctaatac
agacttggaagaagagtgaaaacacagtcaactttctggcattgctttat
aggaacagtctcaatgtgttataatgatttctaatgcttttctacctttg
tcttttacgattgttgtccacttagcaactttctcaaatagacattttta
tatctcttcaggaggtagaatgaacagatactttccatctttcctatctg
agaacaaggaattatgacttcaaatcagaaaataaatatataaaataaag
tgataaactattagaataaaaatatcaaagataagaaatttaaatttttt
cattcttatgattataatataattgcatcatttctgtctctacttttccc
caacaaaaccctccaaaatattcatccttatgttctttcaaatttatggc
ctctttttcattaatcaatgttgcatctatacatatattttcctaaatac
aaaagtacaaccttatcaatctgtataatgttactttaatatatgtattt
tcaaggctgcctatttggcactaaataactaatttgtgtgctcttccctg
ggaaggactataattttacacttagcattcttgtagttgccaattgctct
agtattattgtttgaagtttcctggcttccccatacactctagcaatatc
aaatgctgtgttcttgtcatgctagatagtcatgttggtgtatggactta
attgtgtagcatctggacattctaagggattccacctcgacttcctggat
cctatg
gaattctggactggatggaacaaaatatctttagtgtgtaatggcaaagg
ttttcaaaatgacaagcaaaggacagagagagaaagagatggggggcatg
agcagactgctgcaaaaaaaacattagttcttgttttcatccacagacat
aacattcgggaacacataatgaaagttctattgttctttttattggaacc
actgtggcacagacggaagaacccttcagagatttggattttgtttactt
agaaaaatgtttttaaaatattattttatatttcctgtaagagcattctt
taatgcgatgtctttgctgtgcaaataaaagtgcatcataattccattag
ggcaaaagatagattctaaacccaaaccaaatttagggagcaatcttttt
gaatttgcttttctttatttatgtttctgctcttgcatggtgttgctgct
catatgcctctgagcatggttagaaatgatcaaggcaatattaacaattg
atcttccccatctggttcaggataaaagccaaactaaatcaataattttt
ctattgtacaacactttgctatcatttacttccagggtaatttactgtgt
atgttcaaagatggctgagaattttatccccaagagtatcctcaataggc
ccttcaggcactgttgtgaacttgtcatttgactcccttttatattttgt
ttgccgtggacatctatgatttttgatacactaactatgattaatttcta
taccccacacagaaaggagatgtaattcctaaggtgttatttgtattctt
aggctaaatcataaactcagtgttttgtattaggtttacagaaaaacagc
atgagaaaatcactttagaatcagtcagagattcccagggggtagattat
ttcctaagaatgaatgcgtggctgggttagaggaggagagttctctcatt
tattctctatagcttgctaagtgactagcagtgtgggcagatatagagga
catccaataagaaactcaggagttaggagaagaatctatgtttggagttg
tacattctatgctataggtctgacacagccttcattctctttggacatag
actgaatagtaatggactggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57883647_57884801
seq2: B6Ng01-306K23.b_41_1196

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTATTATTGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTATTATTGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCA  200

seq1  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTGTTCAGGAATTTTTCCCCTATGCCCATATCTTTAGGTTAAAATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGAATTTTTCCCCTATGCCCATATCTTTAGGTTAAAATTTCTA  300

seq1  TTAAGGACATGACATGCTGAGCATAGTACAAGATGTCAAGTATGTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGACATGACATGCTGAGCATAGTACAAGATGTCAAGTATGTCCTTA  350

seq1  AGCAACATTACCTCCTTAGAGTGAGTATTAACATAGTCATCCTCTAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATTACCTCCTTAGAGTGAGTATTAACATAGTCATCCTCTAATAC  400

seq1  AGACTTGGAAGAAGAGTGAAAACACAGTCAACTTTCTGGCATTGCTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGAAGAAGAGTGAAAACACAGTCAACTTTCTGGCATTGCTTTAT  450

seq1  AGGAACAGTCTCAATGTGTTATAATGATTTCTAATGCTTTTCTACCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGTCTCAATGTGTTATAATGATTTCTAATGCTTTTCTACCTTTG  500

seq1  TCTTTTACGATTGTTGTCCACTTAGCAACTTTCTCAAATAGACATTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACGATTGTTGTCCACTTAGCAACTTTCTCAAATAGACATTTTTA  550

seq1  TATCTCTTCAGGAGGTAGAATGAACAGATACTTTCCATCTTTCCTATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTCAGGAGGTAGAATGAACAGATACTTTCCATCTTTCCTATCTG  600

seq1  AGAACAAGGAATTATGACTTCAAATCAGAAAATAAATATATAAAATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGGAATTATGACTTCAAATCAGAAAATAAATATATAAAATAAAG  650

seq1  TGATAAACTATTAGAATAAAAATATCAAAGATAAGAAATTTAAATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTATTAGAATAAAAATATCAAAGATAAGAAATTTAAATTTTTT  700

seq1  CATTCTTATGATTATAATATAATTGCATCATTTCTGTCTCTACTTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTATGATTATAATATAATTGCATCATTTCTGTCTCTACTTTTCCC  750

seq1  CAACAAAACCCTCCAAAATATTCATCCTTATGTTCTTTCAAATTTATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAACCCTCCAAAATATTCATCCTTATGTTCTTTCAAATTTATGGC  800

seq1  CTCTTTTTCATTAATCAATGTTGCATCTATACATATATTTTCCTAAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCATTAATCAATGTTGCATCTATACATATATTTTCCTAAATAC  850

seq1  AAAAGTACAACCTTATCAATCTGTATAATGTTACTTTAATATATGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACAACCTTATCAATCTGTATAATGTTACTTTAATATATGTATTT  900

seq1  TCAAGGCTGCCTATTTGGCACTAAAATAACTAATTTGTGTGCTCTTCCCT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAAGGCTGCCTATTTGGCACT-AAATAACTAATTTGTGTGCTCTTCCCT  949

seq1  GGGAAGGACTATAATTTTACACTTAGCATTC-TGTAGTTGCCAATTGCTC  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGAAGGACTATAATTTTACACTTAGCATTCTTGTAGTTGCCAATTGCTC  999

seq1  TAGGTATATTG-TTGAAGTTTCCTGGGCTTCCCCATACACTCTAGC-ATA  1047
      |||   ||||| |||||||||||| ||||||||||||||||||||| |||
seq2  TAGTATTATTGTTTGAAGTTTCCT-GGCTTCCCCATACACTCTAGCAATA  1048

seq1  TCAATTGCTGTTGTTCTTTGTCATGCTTAGATAGTCATGT--GTGTATGA  1095
      |||| ||||| ||||| ||||||||| |||||||||||||  ||||||| 
seq2  TCAAATGCTG-TGTTC-TTGTCATGC-TAGATAGTCATGTTGGTGTATGG  1095

seq1  ATTTATTTGTGTAGCATCT-GACATTTCTAGGAGATTCACACTCGACTTC  1144
      | ||| ||||||||||||| |||| ||||| | |||||   |||||||||
seq2  ACTTAATTGTGTAGCATCTGGACA-TTCTAAGGGATTCCACCTCGACTTC  1144

seq1  CT-GATCCTATG  1155
      || |||||||||
seq2  CTGGATCCTATG  1156

seq1: chr5_57959764_57960901
seq2: B6Ng01-306K23.g_63_1184 (reverse)

seq1  GACCAGGGTCCACTACTA-TCAGTCTAATGT-CAAAGAGAAATTGAAAGC  48
      |||||  ||||| ||||| ||||||| |||| |||||||||  |||| ||
seq2  GACCA--GTCCATTACTATTCAGTCT-ATGTCCAAAGAGAA--TGAAGGC  45

seq1  TGTTGTCAGAACTATAAAGCATAG-ATGTACCAACCTTCCAAACATAGGA  97
      || ||||||| ||||  ||||||| ||||| ||||  |||||||||| ||
seq2  TG-TGTCAGACCTAT--AGCATAGAATGTA-CAAC--TCCAAACATA-GA  88

seq1  TTCTTCTCCTAACTCCCTGGAGGTTTTCTTAATGGAATGTTCCTTCTATA  147
      ||||||||||||||||   |||  ||||||| ||| ||||  | ||||||
seq2  TTCTTCTCCTAACTCC--TGAG--TTTCTTATTGG-ATGT--CCTCTATA  131

seq1  TTCTGCCCACACTGCTTAGTCACTTAGCAAGCTATAGAGAATAAATGAGA  197
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -TCTGCCCACACTGC-TAGTCACTTAGCAAGCTATAGAGAATAAATGAGA  179

seq1  GAACTCTCCT-CTCTAACCCAGCCACGCATTCATTCTTAGGAAATAATCT  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCCTCCTCTAACCCAGCCACGCATTCATTCTTAGGAAATAATCT  229

seq1  ACCCCCTGGGAATCTCTGACTGATTCTAAAGTGATTTTCTCATGCTGTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTGGGAATCTCTGACTGATTCTAAAGTGATTTTCTCATGCTGTTT  279

seq1  TTCTGTAAACCTAATACAAAACACTGAGTTTATGATTTAGCCTAAGAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAACCTAATACAAAACACTGAGTTTATGATTTAGCCTAAGAATA  329

seq1  CAAATAACACCTTAGGAATTACATCTCC-TTCTGTGTGGGGTATAGAAAT  395
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAATAACACCTTAGGAATTACATCTCCTTTCTGTGTGGGGTATAGAAAT  379

seq1  TAATCATAGTTAGTGTATCAAAAATCATAGATGTCCACGGCAAACAAAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAGTTAGTGTATCAAAAATCATAGATGTCCACGGCAAACAAAAT  429

seq1  ATAAAAGGGAGTCAAATGACAAGTTCACAACAGTGCCTGAAGGGCCTATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGGAGTCAAATGACAAGTTCACAACAGTGCCTGAAGGGCCTATT  479

seq1  GAGGATACTCTTGGGGATAAAATTCTCAGCCATCTTTGAACATACACAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATACTCTTGGGGATAAAATTCTCAGCCATCTTTGAACATACACAGT  529

seq1  AAATTACCCTGGAAGTAAATGATAGCAAAGTGTTGTACAATAGAAAAATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCCTGGAAGTAAATGATAGCAAAGTGTTGTACAATAGAAAAATT  579

seq1  ATTGATTTAGTTTGGCTTTTATCCTGAACCAGATGGGGAAGATCAATTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTAGTTTGGCTTTTATCCTGAACCAGATGGGGAAGATCAATTGT  629

seq1  TAATATTGCCTTGATCATTTCTAACCATGCTCAGAGGCATATGAGCAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGCCTTGATCATTTCTAACCATGCTCAGAGGCATATGAGCAGCA  679

seq1  ACACCATGCAAGAGCAGAAACATAAATAAAGAAAAGCAAATTCAAAAAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGCAAGAGCAGAAACATAAATAAAGAAAAGCAAATTCAAAAAGA  729

seq1  TTGCTCCCTAAATTTGGTTTGGGTTTAGAATCTATCTTTTGCCCTAATGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCCTAAATTTGGTTTGGGTTTAGAATCTATCTTTTGCCCTAATGG  779

seq1  AATTATGATGCACTTTTATTTGCACAGCAAAGACATCGCATTAAAGAATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGATGCACTTTTATTTGCACAGCAAAGACATCGCATTAAAGAATG  829

seq1  CTCTTACAGGAAATATAAAATAATATTTTAAAAACATTTTTCTAAGTAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACAGGAAATATAAAATAATATTTTAAAAACATTTTTCTAAGTAAA  879

seq1  CAAAATCCAAATCTCTGAAGGGTTCTTCCGTCTGTGCCACAGTGGTTCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCAAATCTCTGAAGGGTTCTTCCGTCTGTGCCACAGTGGTTCCA  929

seq1  ATAAAAAGAACAATAGAACTTTCATTATGTGTTCCCGAATGTTATGTCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAACAATAGAACTTTCATTATGTGTTCCCGAATGTTATGTCTG  979

seq1  TGGATGAAAACAAGAACTAATGTTTTTTTTGCAGCAGTCTGCTCATGCCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAAACAAGAACTAATGTTTTTTTTGCAGCAGTCTGCTCATGCCC  1029

seq1  CCCATCTCTTTCTCTCTCTGTCCTTTGCTTGTCATTTTGAAAACCTTTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCTTTCTCTCTCTGTCCTTTGCTTGTCATTTTGAAAACCTTTGC  1079

seq1  CATTACACACTAAAGATATTTTGTTCCATCCAGTCCAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACACACTAAAGATATTTTGTTCCATCCAGTCCAGAATTC  1122