BAC Information

Click to search

BAC

Clone NameB6Ng01-306O02
Chromosome5 (Build37)
Map Location 115,387,598 - 115,450,232
singlet/doubletdoublet
Overlap geneOasl1, 2210016L21Rik, Tcf1
Upstream geneSsh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2
Downstream geneSppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306O02.bB6Ng01-306O02.g
ACCGA099798GA099799
length9461,073
definitionB6Ng01-306O02.b B6Ng01-306O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,449,287 - 115,450,232)(115,387,598 - 115,388,676)
sequence
gaattccctaagtcttcaacaaacgtccatcaataactataatgggttgt
gctgtactgaccgcatcttaatgacttcttgttgtccgaggagcgctttg
gggatagttttctccctccacttttaatggggttctgagaagctcaaact
caggtcggcaagcttgtaaggcaagcaaccttacctggctgggctggaac
ttactgtgttctcaaacacacatcccaccgtggctacaccttatcatttg
agatagggtctctctgtctctcccaggacctggagtttgccggctctgct
agtctgggtggcctgagagacccagatctgcccgtgtccacccctcccag
tgctaagaaacaaatcactaagtctggctggtttgtttttgtttgtttgt
tttaaaagacagggtgttgctaaaattccttcccttccctggggaagata
taaacaaaacaaacacaagcgccatgattccaacaaaaaccaaggtacta
gtccaggaagttcagtctgagaagccagtgagtttacgaggcttacaaac
ctcacatacaacggggaggtgggcagaaaagtgggtgaatttaaagcagc
cacgatgaaagatctctaccccagcggggacaactactcctactctgtgg
ttggttggaattgagccggctgtcctgtcccctccctaactcctgaggtg
tgtaatcagggcagggaggtgtgttggatactcaggtgagagtcccatga
ccctttctgtccctcccttctgtgtgcctagccagtttggtcctaagagc
cgagctgctgtggctcggaggatggtaccgtactacacggggtctcacga
gggcctttctagggccctggctgggctggaattgactgtgtagaccatgc
tggtctcaaacacacagggatccacctttttttggggggggggtgg
gaattctgcagtcccctgggaagtcatgccaggacctctgccttcctcgt
ggcctcactgtcaagactgtgtcagtgaatagctggcctcacagactatt
ctcacatgttcagagaaagccaaaccatcttcctaaccaatcacagggac
cctgcttgaggttgtcccacctccaaattcttcccagtgacctccatcag
ggcggctctgaagccttcccctgtgcccccaaccacttctgcctgccttc
gactatccaaggcaaggtaggaggggatcaagttcctttcaaatggagaa
taaaaaagccattgtttcttcccagatgagtggtcctcatttgtcaccac
agatgcctctcaactctgcgattgatgggtatagggaaactgagtcaaaa
agagacaaagcctgagaaatggagtttgaagatgagacagtatttaaaag
ttctttctgggcatggtatcatgcctttaatcttgggaggcagaggcagg
cagatttctgagttcgaggccagcctggtctacagagtgagttccaagac
agccagggctacacagagaaaccctgtctcgaaaagataaaaacaaacaa
acaaacaaacaacaacaacaacaaaacaaaccttctaggcaatttagcaa
taccattatatatacttcccaactcttttacatccggggcctacagtatc
tcttttctagagggtgaacagtctagctcaatccagatcttcatatactt
cacaatacagaccatactgtaggggaatgaacagggctgaggcagatcag
ctggcagaacactggcctgttcctaagaagtccccagttcaatccccagt
acttccaggtgtgtcaactcctgcctagaatcccagcacagagtcaggaa
gatcagaattcagtcatctttgggttgcatggcaggttgggagccagcct
gagctacccgagaccctttctaaactatcatggattagatgaataggtca
ctgcctggtccttttacattccgtagcaaaacaccacaaattcagtgtct
gtgaatacaagtgtttgtttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115449287_115450232
seq2: B6Ng01-306O02.b_46_991 (reverse)

seq1  CCACCACCCCCCCAAAAAAAGGTGGATCCCTGTGTGTTTGAGACCAGCAT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCCCCCAAAAAAAGGTGGATCCCTGTGTGTTTGAGACCAGCAT  50

seq1  GGTCTACACAGTCAATTCCAGCCCAGCCAGGGCCCTAGAAAGGCCCTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACACAGTCAATTCCAGCCCAGCCAGGGCCCTAGAAAGGCCCTCGT  100

seq1  GAGACCCCGTGTAGTACGGTACCATCCTCCGAGCCACAGCAGCTCGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCGTGTAGTACGGTACCATCCTCCGAGCCACAGCAGCTCGGCTC  150

seq1  TTAGGACCAAACTGGCTAGGCACACAGAAGGGAGGGACAGAAAGGGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACCAAACTGGCTAGGCACACAGAAGGGAGGGACAGAAAGGGTCAT  200

seq1  GGGACTCTCACCTGAGTATCCAACACACCTCCCTGCCCTGATTACACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTCACCTGAGTATCCAACACACCTCCCTGCCCTGATTACACACC  250

seq1  TCAGGAGTTAGGGAGGGGACAGGACAGCCGGCTCAATTCCAACCAACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTTAGGGAGGGGACAGGACAGCCGGCTCAATTCCAACCAACCAC  300

seq1  AGAGTAGGAGTAGTTGTCCCCGCTGGGGTAGAGATCTTTCATCGTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGAGTAGTTGTCCCCGCTGGGGTAGAGATCTTTCATCGTGGCTG  350

seq1  CTTTAAATTCACCCACTTTTCTGCCCACCTCCCCGTTGTATGTGAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATTCACCCACTTTTCTGCCCACCTCCCCGTTGTATGTGAGGTTT  400

seq1  GTAAGCCTCGTAAACTCACTGGCTTCTCAGACTGAACTTCCTGGACTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCTCGTAAACTCACTGGCTTCTCAGACTGAACTTCCTGGACTAGT  450

seq1  ACCTTGGTTTTTGTTGGAATCATGGCGCTTGTGTTTGTTTTGTTTATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTTTTTGTTGGAATCATGGCGCTTGTGTTTGTTTTGTTTATATC  500

seq1  TTCCCCAGGGAAGGGAAGGAATTTTAGCAACACCCTGTCTTTTAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGGGAAGGGAAGGAATTTTAGCAACACCCTGTCTTTTAAAACAA  550

seq1  ACAAACAAAAACAAACCAGCCAGACTTAGTGATTTGTTTCTTAGCACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAACAAACCAGCCAGACTTAGTGATTTGTTTCTTAGCACTGG  600

seq1  GAGGGGTGGACACGGGCAGATCTGGGTCTCTCAGGCCACCCAGACTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGGACACGGGCAGATCTGGGTCTCTCAGGCCACCCAGACTAGCA  650

seq1  GAGCCGGCAAACTCCAGGTCCTGGGAGAGACAGAGAGACCCTATCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGGCAAACTCCAGGTCCTGGGAGAGACAGAGAGACCCTATCTCAAA  700

seq1  TGATAAGGTGTAGCCACGGTGGGATGTGTGTTTGAGAACACAGTAAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGGTGTAGCCACGGTGGGATGTGTGTTTGAGAACACAGTAAGTTC  750

seq1  CAGCCCAGCCAGGTAAGGTTGCTTGCCTTACAAGCTTGCCGACCTGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGCCAGGTAAGGTTGCTTGCCTTACAAGCTTGCCGACCTGAGTT  800

seq1  TGAGCTTCTCAGAACCCCATTAAAAGTGGAGGGAGAAAACTATCCCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCTCAGAACCCCATTAAAAGTGGAGGGAGAAAACTATCCCCAAA  850

seq1  GCGCTCCTCGGACAACAAGAAGTCATTAAGATGCGGTCAGTACAGCACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCCTCGGACAACAAGAAGTCATTAAGATGCGGTCAGTACAGCACAA  900

seq1  CCCATTATAGTTATTGATGGACGTTTGTTGAAGACTTAGGGAATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTATAGTTATTGATGGACGTTTGTTGAAGACTTAGGGAATTC  946

seq1: chr5_115387598_115388676
seq2: B6Ng01-306O02.g_67_1139

seq1  GAATTCTGCAGTCCCCTGGGAAGTCATGCCAGGACCTCTGCCTTCCTCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGTCCCCTGGGAAGTCATGCCAGGACCTCTGCCTTCCTCGT  50

seq1  GGCCTCACTGTCAAGACTGTGTCAGTGAATAGCTGGCCTCACAGACTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCACTGTCAAGACTGTGTCAGTGAATAGCTGGCCTCACAGACTATT  100

seq1  CTCACATGTTCAGAGAAAGCCAAACCATCTTCCTAACCAATCACAGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGTTCAGAGAAAGCCAAACCATCTTCCTAACCAATCACAGGGAC  150

seq1  CCTGCTTGAGGTTGTCCCACCTCCAAATTCTTCCCAGTGACCTCCATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGAGGTTGTCCCACCTCCAAATTCTTCCCAGTGACCTCCATCAG  200

seq1  GGCGGCTCTGAAGCCTTCCCCTGTGCCCCCAACCACTTCTGCCTGCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCTCTGAAGCCTTCCCCTGTGCCCCCAACCACTTCTGCCTGCCTTC  250

seq1  GACTATCCAAGGCAAGGTAGGAGGGGATCAAGTTCCTTTCAAATGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCCAAGGCAAGGTAGGAGGGGATCAAGTTCCTTTCAAATGGAGAA  300

seq1  TAAAAAAGCCATTGTTTCTTCCCAGATGAGTGGTCCTCATTTGTCACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGCCATTGTTTCTTCCCAGATGAGTGGTCCTCATTTGTCACCAC  350

seq1  AGATGCCTCTCAACTCTGCGATTGATGGGTATAGGGAAACTGAGTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTCTCAACTCTGCGATTGATGGGTATAGGGAAACTGAGTCAAAA  400

seq1  AGAGACAAAGCCTGAGAAATGGAGTTTGAAGATGAGACAGTATTTAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAAGCCTGAGAAATGGAGTTTGAAGATGAGACAGTATTTAAAAG  450

seq1  TTCTTTCTGGGCATGGTATCATGCCTTTAATCTTGGGAGGCAGAGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGGGCATGGTATCATGCCTTTAATCTTGGGAGGCAGAGGCAGG  500

seq1  CAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGAC  550

seq1  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAGATAAAAACAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAGATAAAAACAAACAA  600

seq1  ACAAACAAACAACAACAACAACAAAACAAACCTTCTAGGCAATTTAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAACAACAACAACAAAACAAACCTTCTAGGCAATTTAGCAA  650

seq1  TACCATTATATATACTTCCCAACTCTTTTACATCCGGGGCCTACAGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTATATATACTTCCCAACTCTTTTACATCCGGGGCCTACAGTATC  700

seq1  TCTTTTCTAGAGGGTGAACAGTCTAGCTCAATCCAGATCTTCATATACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTAGAGGGTGAACAGTCTAGCTCAATCCAGATCTTCATATACTT  750

seq1  CACAATACAGACCATACTGTAGGGGAATGAACAGGGCTGAGGCAGATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACAGACCATACTGTAGGGGAATGAACAGGGCTGAGGCAGATCAG  800

seq1  CTGGCAGAACACTGGCCTGTTCCTAAGAAGTCCCCAGTTCAATCCCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAACACTGGCCTGTTCCTAAGAAGTCCCCAGTTCAATCCCCAGT  850

seq1  ACTTCCAGGTGTGTCAACTCCTGCCTAGAATCCCAGCACAGAGTCAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGGTGTGTCAACTCCTGCCTAGAATCCCAGCACAGAGTCAGGAA  900

seq1  GATCAGGAATTCAGTCATCTTT-GGTTGCATGGCAGGTTGGAGGCCAGCC  949
      ||||| |||||||||||||||| ||||||||||||||||||  |||||||
seq2  GATCA-GAATTCAGTCATCTTTGGGTTGCATGGCAGGTTGGGAGCCAGCC  949

seq1  TGAGCTACCCGAGACCCTTTCTAAAACTATCAATGGATTAGATGAATAAG  999
      |||||||||||||||||||||| |||||||| |||||||||||||||| |
seq2  TGAGCTACCCGAGACCCTTTCT-AAACTATC-ATGGATTAGATGAATAGG  997

seq1  TCACTGCCTTGGTCCTTTTACATTCCCGTAGCAAAACACCACAAATTCAG  1049
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  TCACTGCC-TGGTCCTTTTACATT-CCGTAGCAAAACACCACAAATTCAG  1045

seq1  TGTCTTGTGAATAACAAGTGTTTGTTTCTC  1079
      |||| ||||||| |||||||||||||||||
seq2  TGTC-TGTGAAT-ACAAGTGTTTGTTTCTC  1073