BAC Information

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BAC

Clone NameB6Ng01-306O03
Chromosome5 (Build37)
Map Location 87,726,140 - 87,727,299
singlet/doubletsinglet
Overlap geneLOC665468
Upstream geneTmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37
Downstream geneUgt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306O03.bB6Ng01-306O03.g
ACCGA099800GA099801
length9671,164
definitionB6Ng01-306O03.b B6Ng01-306O03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaatgactgagaagcacctgaaaagaaa
gttcaacatccttaatcatcagggaaatgcaaatcaaagcaaccctgaga
ttatacctcacaccagtcagaatggctaggatcaaaaattcaggtgacag
cagatgctggcaaggatgtggagagagaggaacactcctcacttggtcac
agcaggactgcaagcttgtacaactactctggaaatcagtatggtggttc
ctcaaaaaactggacatagtagcaattcctctcttgggcatatacccaga
agatgttccaactggtaagatggacacatgctctactatgttcatagcag
ccttatttttaatagccagaagctggaaagaacccagatgtcctcaacag
aagaatagatacagaaaatgtggtacatttacacaatggattactactca
gctattaaaaacaatgtatctttgaaattcttaggcaaatggatgtatct
ggaggatatcatactgagtgaggtaacccaatcacaaaagaagtcacttt
atatgtactcactgataagtggatattagccttgaaacttaaaataccca
agatacaatttgcaaaatgcaagaaaatcgagaagaaggaagaccaacat
gtggatacttcattcttccttagaatagggaacgaaatacccatggaagg
agttacagagaaaaagtttggaggtgagacaaaaggatggacgatccaga
tactgcactacccggggatccatcccataatcagccaccaaacgcagaca
ctcttgcatatgccagcaagattttgctgaaaggactctgatatagctgt
ctcgagtgagggtatgtcagtgcctggcaatacagaagtgaatgctcaga
gtcatctattggatgcaacacaggcccccatggagagctagagaaagtac
ccagagctgtggggtct
gaattccacagtttcttctttttagtaaaaggcagaagatagtttggctc
tattctgtaaactatgtgccaccattcactgctctccagtctcttcctag
gaacaaatttctcttatacattgtgttatacttgatttaaaaattatgtt
ggaggattcccattatggaaataattcattattatttcaatgttggggga
gccctgattaattctcagaatacaataaactttgggatgtgagatagaaa
tgcaaggataatcaatacacatctttacacttaccattaagaagaacact
ggaataagaaaaatattgaatgatactttcaagagctatctagagaagat
gactatgtttatatattaatattagacaattattcacagaaaaatttgct
ttaggtaagaaaaaactgtcaaaatgagaatttttttaaagtaaatctgt
tgatcttgtgcaggctggcagatactatttctaaaggccaccgattagca
gttttgacatgtgcatgaagtcacagagcctaatgacatagctaggttca
ctacctgaggatactgagctcagagtttccaggcagtggatttaatccat
ctcaaatctcaccaccaaaatgtttatatccctaacttgctttacattac
ttgtgcttcttgcaggctttagagaagttcagtagataaattttatattc
atagattttagagttaagaaacaattatttacaatagttattgaattcta
tgttaaagcattcatatatggatcttggattgcatatcattggtaacatg
tttgtactacatcaagaggccttgaaattttattccaagaattctataaa
aagctggcagcagtaattcctataacattagtttggggtacttaaagaga
aatcaatacctggttttcatttgctaaccaggttcaccaaattggtggga
tccagtcaatgggccatttcttagtacgtaaaggcaatagcaatatgaga
gacattatccatatagcgtccacacacacacatatacctcacacccatgc
acacttatacacacatagacttaaggcagtgatcctggttaataaaattt
gaagttccatgtgagcatagaaaattgggaacaatatatatttacaagtt
aaagagtccaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87726140_87727299
seq2: B6Ng01-306O03.g_62_1225

seq1  GAATTCCACAGTTTCTTCTTTTTAGTAAAAGGCAGAAGATAGTTTGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTTTCTTCTTTTTAGTAAAAGGCAGAAGATAGTTTGGCTC  50

seq1  TATTCTGTAAACTATGTGCCACCATTCACTGCTCTCCAGTCTCTTCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTAAACTATGTGCCACCATTCACTGCTCTCCAGTCTCTTCCTAG  100

seq1  GAACAAATTTCTCTTATACATTGTGTTATACTTGATTTAAAAATTATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATTTCTCTTATACATTGTGTTATACTTGATTTAAAAATTATGTT  150

seq1  GGAGGATTCCCATTATGGAAATAATTCATTATTATTTCAATGTTGGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTCCCATTATGGAAATAATTCATTATTATTTCAATGTTGGGGGA  200

seq1  GCCCTGATTAATTCTCAGAATACAATAAACTTTGGGATGTGAGATAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGATTAATTCTCAGAATACAATAAACTTTGGGATGTGAGATAGAAA  250

seq1  TGCAAGGATAATCAATACACATCTTTACACTTACCATTAAGAAGAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGATAATCAATACACATCTTTACACTTACCATTAAGAAGAACACT  300

seq1  GGAATAAGAAAAATATTGAATGATACTTTCAAGAGCTATCTAGAGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGAAAAATATTGAATGATACTTTCAAGAGCTATCTAGAGAAGAT  350

seq1  GACTATGTTTATATATTAATATTAGACAATTATTCACAGAAAAATTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTTTATATATTAATATTAGACAATTATTCACAGAAAAATTTGCT  400

seq1  TTAGGTAAGAAAAAACTGTCAAAATGAGAATTTTTTTAAAGTAAATCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAAGAAAAAACTGTCAAAATGAGAATTTTTTTAAAGTAAATCTGT  450

seq1  TGATCTTGTGCAGGCTGGCAGATACTATTTCTAAAGGCCACCGATTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGTGCAGGCTGGCAGATACTATTTCTAAAGGCCACCGATTAGCA  500

seq1  GTTTTGACATGTGCATGAAGTCACAGAGCCTAATGACATAGCTAGGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACATGTGCATGAAGTCACAGAGCCTAATGACATAGCTAGGTTCA  550

seq1  CTACCTGAGGATACTGAGCTCAGAGTTTCCAGGCAGTGGATTTAATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGAGGATACTGAGCTCAGAGTTTCCAGGCAGTGGATTTAATCCAT  600

seq1  CTCAAATCTCACCACCAAAATGTTTATATCCCTAACTTGCTTTACATTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATCTCACCACCAAAATGTTTATATCCCTAACTTGCTTTACATTAC  650

seq1  TTGTGCTTCTTGCAGGCTTTAGAGAAGTTCAGTAGATAAATTTTATATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTCTTGCAGGCTTTAGAGAAGTTCAGTAGATAAATTTTATATTC  700

seq1  ATAGATTTTAGAGTTAAGAAACAATTATTTACAATAGTTATTGAATTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTTAGAGTTAAGAAACAATTATTTACAATAGTTATTGAATTCTA  750

seq1  TGTTAAAGCATTCATATATGGATCTTGGATTGCATATCATTGGTAACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGCATTCATATATGGATCTTGGATTGCATATCATTGGTAACATG  800

seq1  TTTGTACTACATCAAGAGGCCTTGAAATTTTATTCCAAGAATTCTATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTACATCAAGAGGCCTTGAAATTTTATTCCAAGAATTCTATAAA  850

seq1  AAGCTGGCAGCAGTAATTCCTATAACATTAGTTTGGGGTACTTAAAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCAGCAGTAATTCCTATAACATTAGTTTGGGGTACTTAAAGAGA  900

seq1  AATCAATACCTGGTTTTCATTTGCTAACCAGGTTCACCAAATTGGTGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATACCTGGTTTTCATTTGCTAACCAGGTTCACCAAATTGGTGGGA  950

seq1  TCCAGTCAATGGGCCATTTCTTAGTACGT-AAGGCAATAGCAATATGAGA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TCCAGTCAATGGGCCATTTCTTAGTACGTAAAGGCAATAGCAATATGAG-  999

seq1  AGACAATTAATCCCATATAGCGTCCACACACAACAACATATAACCTCACA  1049
      |||| ||||   ||||||||||||||||||||   |||||| ||||||||
seq2  AGAC-ATTA--TCCATATAGCGTCCACACACA--CACATAT-ACCTCACA  1043

seq1  CCCATGCACACATATACACACATAGACCTAAAGCAGTGATTCTGGGTTAT  1099
      ||||||||||| ||||||||||||||| ||| |||||||| |||| | ||
seq2  CCCATGCACACTTATACACACATAGACTTAAGGCAGTGATCCTGGTTAAT  1093

seq1  -AAATATGAAG-TCCATGTAAAGCATAGAAAATTGG-----ACATATATT  1142
       |||| ||||| |||||||  |||||||||||||||     | |||||||
seq2  AAAATTTGAAGTTCCATGT-GAGCATAGAAAATTGGGAACAATATATATT  1142

seq1  TAC-ACTTAAAG---TCAATTA  1160
      ||| | ||||||    ||||||
seq2  TACAAGTTAAAGAGTCCAATTA  1164