BAC Information

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BAC

Clone NameB6Ng01-306O12
Chromosome5 (Build37)
Map Location 98,584,038 - 98,585,204
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326
Downstream genePrdm8, Fgf5, 1700007G11Rik, Bmp3, Prkg2, LOC100041680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306O12.bB6Ng01-306O12.g
ACCGA099818GA099819
length1,1961,187
definitionB6Ng01-306O12.b B6Ng01-306O12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccagtgagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagttacaatttcctaaagacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaatcacccttggaaggagttacagagacaaagtttggagctgagacta
aagggtggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgccacagtcagctaatggatggatcacagggctccaat
ggaggagctagagaaagtaccaaggagctaaagggatctgcaacctatag
gtggatcaacattatggactacagtaccccggagctctggactctagctg
catatatatcaaagaatggcctagtcggccatcactggaaaggagaaggg
tcatggaacacacaacctttatatgccaaaaactggtaacctagttaaag
ggggagtggctaggtaggggaactggtgggcgcgtagcctcatgac
gaattcagcccacagaaagtcaaaaacttattgaaaatattatatgatat
ttttgataactcccttgcatgattctccaatgttaactttgtagaccaca
cctttcattacaatgtcaaatgcttggccagaaggagtagatcagtaaga
aagtgggagaccagaactcagagcaggggacagtactcaacatgttggtg
actcctcaagcttggaaggattttgaaatgactttacttatttgtgtgta
tatgtcactgtgaatgtataaagtcatttacacattcttttgggtgctac
tgtgcacccctgtacaaacaaagaggccaaagactgttggatcccacaaa
gattctttggatgtgctaggtaggcttttttttttttttttttctttttc
aacttgatgtaagatagagtcagatgggaagaagaaacccctgctcttat
cagattgcctccagacattttctgactggtgatagatgtaagagctccca
gcccactgtgggtggtgtcatcccctgggcaggttgtcctgggccatata
tgaaagtgggctgaaaaaggcatgatgaacaagtcggtaagaactactcc
ttcatggcctctgcttcagtccctgactgtaggttcttactttgagtttc
tgcgctgatttccctcagtgatggactgtgactgtgacatggaggccaat
taaacccttttcttctgcaaggtgtttttggtcatgtgttttagcacagc
agtattaaacaaggagaaatggacatctggcttgttgtgtgggtgctgaa
aattccaagttcctgtacagcctgtggttgtacaagtgagtgctcttagc
ccctgagtcatggctccagtccaaaatacagaatctgaacaaatctgttg
gggcttttgctccttcatgattaatgtggggtaaggcccagcctactgtg
gggtgggctaaaacaagggaaaagattgaagcctaatcataaaagtcaac
aacatcatacaaaaatgataaaagattgtaagaataaatagctaactagg
ttgacttacatttcaacaatgaaatattaacatcaaaaacataatggtgg
gaatacaacaaatgcctgcacttatttacaataattttgtggctgcctcc
aaggacctgtgactccagtcttgatttgatatccaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98584038_98585204
seq2: B6Ng01-306O12.g_67_1253 (reverse)

seq1  ATTGG--ATCCACTCAAG-CTGGAGTCACAGGTCCCTGTGAGCAG-CACA  46
      |||||  ||| | ||||| |||||||||||||||| ||   |||| ||||
seq2  ATTGGATATCAAATCAAGACTGGAGTCACAGGTCCTTGGAGGCAGCCACA  50

seq1  AAATAAATGATAATAAGTTGCAGGCACTTGTGGTA-TCCCA-CATTATG-  93
      |||| | ||  |||||| |||||||| |||| ||| ||||| ||||||| 
seq2  AAATTATTGTAAATAAG-TGCAGGCATTTGTTGTATTCCCACCATTATGT  99

seq1  TTTTGATGTAAATA-TTCATTGTGGAATGGTAAAGTCAACCTAGTTAGCT  142
      ||||||||| |||| |||||||| |||  || ||||||||||||||||||
seq2  TTTTGATGTTAATATTTCATTGTTGAAATGT-AAGTCAACCTAGTTAGCT  148

seq1  ATT--ATCTTAC-ATC-TTTATCA-TTTTGTATGATGTTGTTGACTTTTA  187
      |||   |||||| ||| ||||||| |||||||||||||||||||||||||
seq2  ATTTATTCTTACAATCTTTTATCATTTTTGTATGATGTTGTTGACTTTTA  198

seq1  TGATT-GGC-TCAATCTTTTCCCTTGTTTTAGCCCA-CCCACAGTAGGCT  234
      ||||| ||| |||||||||||||||||||||||||| |||||||||||||
seq2  TGATTAGGCTTCAATCTTTTCCCTTGTTTTAGCCCACCCCACAGTAGGCT  248

seq1  GGGCCT--ACCCACATTAATCATGAAGGAGCAAAAGCCCCAACAGATTTG  282
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTACCCCACATTAATCATGAAGGAGCAAAAGCCCCAACAGATTTG  298

seq1  TTCAGATTCTGTA-TCTGGACTGGAGCCATGACTCAGGGGCTAAGAGCAC  331
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  TTCAGATTCTGTATTTTGGACTGGAGCCATGACTCAGGGGCTAAGAGCAC  348

seq1  TCAC-TGTACAACCACAGGCTGTACAGGAACTTGGAA-TTTCAGCACCCA  379
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCACTTGTACAACCACAGGCTGTACAGGAACTTGGAATTTTCAGCACCCA  398

seq1  CACAACAAGCCAGATGTCCATTTCTCCTTGTTTAATACTGCTGTGCTAAA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAGCCAGATGTCCATTTCTCCTTGTTTAATACTGCTGTGCTAAA  448

seq1  ACACATGACCAAAAACACCTTGCAGAAG-AAAGGGTTTAATTGGCCTCCA  478
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACACATGACCAAAAACACCTTGCAGAAGAAAAGGGTTTAATTGGCCTCCA  498

seq1  TGTCACAGTCACAGTCCATCACTGAGGGAAATCAGCGCAGAAACTCAAAG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGTCACAGTCCATCACTGAGGGAAATCAGCGCAGAAACTCAAAG  548

seq1  TAAGAACCTACAGTCAGGGACTGAAGCAGAGGCCATGAAGGAGTAGTTCT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACCTACAGTCAGGGACTGAAGCAGAGGCCATGAAGGAGTAGTTCT  598

seq1  TACCGACTTGTTCATCATGCCTTTTTCAGCCCACTTTCATATATGGCCCA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGACTTGTTCATCATGCCTTTTTCAGCCCACTTTCATATATGGCCCA  648

seq1  GGACAACCTGCCCAGGGGATGACACCACCCACAGTGGGCTGGGAGCTCTT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACCTGCCCAGGGGATGACACCACCCACAGTGGGCTGGGAGCTCTT  698

seq1  ACATCTATCACCAGTCAGAAAATGTCTGGAGGCAATCTGATAAGAGCAGG  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATCACCAGTCAGAAAATGTCTGGAGGCAATCTGATAAGAGCAGG  748

seq1  GGTTTCTTCTTCCCATCTGACTCTATCTTACATCAAGTTGAAAAAGAAAA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTCTTCCCATCTGACTCTATCTTACATCAAGTTGAAAAAGAAAA  798

seq1  AAAAAAAAAAAAAAGCCTACCTAGCACATCCAAAGAATCTTTGTGGGATC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGCCTACCTAGCACATCCAAAGAATCTTTGTGGGATC  848

seq1  CAACAGTCTTTGGCCTCTTTGTTTGTACAGGGGTGCACAGTAGCACCCAA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCTTTGGCCTCTTTGTTTGTACAGGGGTGCACAGTAGCACCCAA  898

seq1  AAGAATGTGTAAATGACTTTATACATTCACAGTGACATATACACACAAAT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTGTAAATGACTTTATACATTCACAGTGACATATACACACAAAT  948

seq1  AAGTAAAGTCATTTCAAAATCCTTCCAAGCTTGAGGAGTCACCAACATGT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGTCATTTCAAAATCCTTCCAAGCTTGAGGAGTCACCAACATGT  998

seq1  TGAGTACTGTCCCCTGCTCTGAGTTCTGGTCTCCCACTTTCTTACTGATC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTGTCCCCTGCTCTGAGTTCTGGTCTCCCACTTTCTTACTGATC  1048

seq1  TACTCCTTCTGGCCAAGCATTTGACATTGTAATGAAAGGTGTGGTCTACA  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTTCTGGCCAAGCATTTGACATTGTAATGAAAGGTGTGGTCTACA  1098

seq1  AAGTTAACATTGGAGAATCATGCAAGGGAGTTATCAAAAATATCGTATAA  1128
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGTTAACATTGGAGAATCATGCAAGGGAGTTATCAAAAATATCATATAA  1148

seq1  TATTTTCAATAAGTTTTTGACTTTCTGTGGGCTGAATTC  1167
      |||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAATAAGTTTTTGACTTTCTGTGGGCTGAATTC  1187