BAC Information

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BAC

Clone NameB6Ng01-307F22
Chromosome5 (Build37)
Map Location 71,582,226 - 71,691,187
singlet/doubletdoublet
Overlap geneLOC635092
Upstream geneGabrg1, Gabra2
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307F22.bB6Ng01-307F22.g
ACCGA100160GA100161
length5941,074
definitionB6Ng01-307F22.b B6Ng01-307F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,690,590 - 71,691,187)(71,582,226 - 71,583,304)
sequence
attgctcatcaaatactttccttagaataagagttatgtaaagaggtgac
tggaaaagatcagaagtcatttcagtacagtcagtgagtgggaagaaatt
aagcctggaaaagtcctttagaaaatgaggctgggatcagtgtagcatct
gcacaggcagggaccgagtgcttactaagcacctactacacatctcagat
gtatgccataaacctctttgacaaatgctgacataaacacccacaaaaaa
tccccagagttcacccagagtccagaatatcaatagatacttgtaaattt
atctgtaacatctatgtcagttttgattttttaataagcaacatctaaga
taagaaaacaattatagctgcaacacaaacttgacaagttatataatttt
agaggccccttggtcttgcaaactttatatgctccagtacaggagaacac
cagggccaagaagtgggagtgggtgggtaggggagcaggtgggggaaggg
tataggggactttcaggatagaatttgtattgtaaatgaaagaaaatatc
taataaaaaattgaaaaaaagaagatgacctaacatgaaacaaa

gaattctcatgtgtctagtcttactatcctaaaaatttaagtagttagca
gatcttgacaatattttgcttccctcattttggcactatagaaatttcag
atctggctctcagagcatatggagttataacaatgtcacttcatcaatga
gtgtgatagatctgtgagatcatatattatcagcaagatggattgaaagt
tcaaagttctaaatatgtctgtatatgcgtcacgtgtgtatgtgtctttg
tatattcctctatatatacagtatacccattcagttcatataatgttact
taaacatatttttcagataagaattgtttctttctttttagatcttgcat
atgctgcactcatggattatttaccctctttttagttttggttttgaaaa
aagttctcaatgaataaccctattgctcttggattctacatcacaggaag
gtcttgaacttggatttttctaattaagttcctgaatagctgagagcaca
aaaaatacagtgtaaatgttatcagataattgtatgagtttataactctg
aagaaaaatgtagtagatctataaatgcaagagtatttggtttagagttg
ttggctggtgtcttaaaaatagatatgaccttatggaaagtgtaagaaga
ccagaaacaagaaatatacccatgagtgatgatatttaaaaaggctagaa
actaagagaatgaagaaataagaatgaatagtaacattaaaaaaacaaac
aaacaaacaaacaaaaaccagagtgttatattgaaaagcgaagaacaatt
gtaactagaaaagtaatttgattagccaggtgccctgtggcagaagtttt
accatagtgaaagcttcactaacgaatcaggaaaagtataaaaatacaag
caattgggcattcttaagctttaggaaaatatttttgttagggtaagagt
tgaaagacttcccagcaattttaaattgtaatttctttgggaaggaagac
ttcacactactgggattgtttttggtggacgtcaggtacatcacagaatg
ttataaactgaagtggaagatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71690590_71691187
seq2: B6Ng01-307F22.b_42_641 (reverse)

seq1  TTTTTTTCATGTTAGAACATCTTC-TTTTTTCAATTTTTTATTAGATATT  49
      ||| |||||||||||  ||||||| |||||||||||||||||||||||||
seq2  TTTGTTTCATGTTAGGTCATCTTCTTTTTTTCAATTTTTTATTAGATATT  50

seq1  TTC-TTCATTTACATTTCAAATGCTATCCTGAAAGTCCCCTATACCCTTC  98
      ||| |||||||||| | ||||| |||||||||||||||||||||||||||
seq2  TTCTTTCATTTACAATACAAATTCTATCCTGAAAGTCCCCTATACCCTTC  100

seq1  CCCCACCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTC  150

seq1  TCCTGTACTGGAGCATATAAAGTTTGCAAGACCAAGGGGCCTCTAAAATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTACTGGAGCATATAAAGTTTGCAAGACCAAGGGGCCTCTAAAATT  200

seq1  ATATAACTTGTCAAGTTTGTGTTGCAGCTATAATTGTTTTCTTATCTTAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTTGTCAAGTTTGTGTTGCAGCTATAATTGTTTTCTTATCTTAG  250

seq1  ATGTTGCTTATTAAAAAATCAAAACTGACATAGATGTTACAGATAAATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTTATTAAAAAATCAAAACTGACATAGATGTTACAGATAAATTT  300

seq1  ACAAGTATCTATTGATATTCTGGACTCTGGGTGAACTCTGGGGATTTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATCTATTGATATTCTGGACTCTGGGTGAACTCTGGGGATTTTTT  350

seq1  GTGGGTGTTTATGTCAGCATTTGTCAAAGAGGTTTATGGCATACATCTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTTTATGTCAGCATTTGTCAAAGAGGTTTATGGCATACATCTGA  400

seq1  GATGTGTAGTAGGTGCTTAGTAAGCACTCGGTCCCTGCCTGTGCAGATGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTAGTAGGTGCTTAGTAAGCACTCGGTCCCTGCCTGTGCAGATGC  450

seq1  TACACTGATCCCAGCCTCATTTTCTAAAGGACTTTTCCAGGCTTAATTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGATCCCAGCCTCATTTTCTAAAGGACTTTTCCAGGCTTAATTTC  500

seq1  TTCCCACTCACTGACTGTACTGAAATGACTTCTGATCTTTTCCAGTCACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTCACTGACTGTACTGAAATGACTTCTGATCTTTTCCAGTCACC  550

seq1  TCTTTACATAACTCTTATTCTAAGGAAAGTATTTGATGAGCAATGAATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACATAACTCTTATTCTAAGGAAAGTATTTGATGAGCAATGAATTC  600


seq1: chr5_71582226_71583304
seq2: B6Ng01-307F22.g_67_1140

seq1  GAATTCTCATGTGTCTAGTCTTACTATCCTAAAAATTTAAGTAGTTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTGTCTAGTCTTACTATCCTAAAAATTTAAGTAGTTAGCA  50

seq1  GATCTTGACAATATTTTGCTTCCCTCATTTTGGCACTATAGAAATTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGACAATATTTTGCTTCCCTCATTTTGGCACTATAGAAATTTCAG  100

seq1  ATCTGGCTCTCAGAGCATATGGAGTTATAACAATGTCACTTCATCAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTCTCAGAGCATATGGAGTTATAACAATGTCACTTCATCAATGA  150

seq1  GTGTGATAGATCTGTGAGATCATATATTATCAGCAAGATGGATTGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATAGATCTGTGAGATCATATATTATCAGCAAGATGGATTGAAAGT  200

seq1  TCAAAGTTCTAAATATGTCTGTATATGCGTCACGTGTGTATGTGTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTCTAAATATGTCTGTATATGCGTCACGTGTGTATGTGTCTTTG  250

seq1  TATATTCCTCTATATATACAGTATACCCATTCAGTTCATATAATGTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCTCTATATATACAGTATACCCATTCAGTTCATATAATGTTACT  300

seq1  TAAACATATTTTTCAGATAAGAATTGTTTCTTTCTTTTTAGATCTTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATATTTTTCAGATAAGAATTGTTTCTTTCTTTTTAGATCTTGCAT  350

seq1  ATGCTGCACTCATGGATTATTTACCCTCTTTTTAGTTTTGGTTTTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCACTCATGGATTATTTACCCTCTTTTTAGTTTTGGTTTTGAAAA  400

seq1  AAGTTCTCAATGAATAACCCTATTGCTCTTGGATTCTACATCACAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCAATGAATAACCCTATTGCTCTTGGATTCTACATCACAGGAAG  450

seq1  GTCTTGAACTTGGATTTTTCTAATTAAGTTCCTGAATAGCTGAGAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAACTTGGATTTTTCTAATTAAGTTCCTGAATAGCTGAGAGCACA  500

seq1  AAAAATACAGTGTAAATGTTATCAGATAATTGTATGAGTTTATAACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACAGTGTAAATGTTATCAGATAATTGTATGAGTTTATAACTCTG  550

seq1  AAGAAAAATGTAGTAGATCTATAAATGCAAGAGTATTTGGTTTAGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGTAGTAGATCTATAAATGCAAGAGTATTTGGTTTAGAGTTG  600

seq1  TTGGCTGGTGTCTTAAAAATAGATATGACCTTATGGAAAGTGTAAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGTGTCTTAAAAATAGATATGACCTTATGGAAAGTGTAAGAAGA  650

seq1  CCAGAAACAAGAAATATACCCATGAGTGATGATATTTAAAAAGGCTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACAAGAAATATACCCATGAGTGATGATATTTAAAAAGGCTAGAA  700

seq1  ACTAAGAGAATGAAGAAATAAGAATGAATAGTAACATTAAAAAAACAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGAATGAAGAAATAAGAATGAATAGTAACATTAAAAAAACAAAC  750

seq1  AAACAAACAAACAAAAACCAGAGTGTTATATTGAAAAGCGAAGAACAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAAAACCAGAGTGTTATATTGAAAAGCGAAGAACAATT  800

seq1  GTAACTAGAAAAGTAATTTGATTAGCCAGGTGCCCTGTGGCAGAAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAGAAAAGTAATTTGATTAGCCAGGTGCCCTGTGGCAGAAGTTTT  850

seq1  ACCATAGTGAAAGCTTCACTAACGAATCAGGAAAAGTATAAAAATACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGTGAAAGCTTCACTAACGAATCAGGAAAAGTATAAAAATACAAG  900

seq1  CAATT-GGCATTCTTAAGCTTTAGGAAAATATTTTTGTTAGGGTAAAGAG  949
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  CAATTGGGCATTCTTAAGCTTTAGGAAAATATTTTTGTTAGGGT-AAGAG  949

seq1  TTGAAAGACTTCCAAGCAATTTTAAATTGTAAATTTCTTTGGGAAGGAAG  999
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  TTGAAAGACTTCCCAGCAATTTTAAATTGT-AATTTCTTTGGGAAGGAAG  998

seq1  ACTTCCAACACTACT-GGAT--GTTTTGGTGGAAGGTCCAAGGTACATCA  1046
      |||||  |||||||| ||||   ||||||||| | |||  ||||||||||
seq2  ACTTC--ACACTACTGGGATTGTTTTTGGTGG-ACGTC--AGGTACATCA  1043

seq1  CAGAATG-TATAAACCTGAAGTTGGAAAGATGGC  1079
      ||||||| |||||| |||||||  | ||||||||
seq2  CAGAATGTTATAAA-CTGAAGT--GGAAGATGGC  1074


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