BAC Information

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BAC

Clone NameB6Ng01-307H08
Chromosome5 (Build37)
Map Location 110,545,806 - 110,699,280
singlet/doubletdoublet
Overlap geneLOC675812, Chfr, Golga3, D5Ertd585e, Pgam5
Upstream geneLOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6
Downstream genePxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307H08.bB6Ng01-307H08.g
ACCGA100226GA100227
length3501,088
definitionB6Ng01-307H08.b B6Ng01-307H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,698,931 - 110,699,280)(110,545,806 - 110,546,599)
sequence
aggaggtgaaagttgagagtatgcatacacttaaagattacaaatgaaaa
cataaaaacttcaaattgaagtgccaaacttgaggtttttcaattcatat
aaacccagtgcctgcaggcagatttctgagttcgaggccagcctggtcta
cagagtgagttccaggacagccagggctacactgagaaaccctgtctcga
aaaaccaaaaaaataaaataaaataaataaataaaccccagtgcctgatt
tccacccactaaagggcaggcatctgcgcctgctaccctgcgaccaccgg
caggtggcgccctgggccgcgtttcctgattcgtcgggggggggggaagg

gaattcctgtttgggagactaagaaaattagaaaaatggctagtcttaag
aaagctagctgtagggtttgttgtcgagtctgtacgttaagaaaatgcag
gcttaaatgaagtcctgactggatcagttggaccaagcaaagtcatctgg
gatcagcagcctttcctgaagctgttctggaagcaggtctctcgaggaac
tgtaggaaacaggcattccagcatcctcaagggctgctgttttggcctcc
cattctgcaatatataagtctataaggacatttgtatggaatgtgcaagg
tgtactgatcagttactgctctttgtttgagcaggtgaaagacaactgtc
tttttttggaagttagtgtgatcatataatcaaactataatataagtctc
cactcataacttttgaaagatggcatgtcataataagtcatgagaattct
gtagccaacaatatctattggccatgtaagtggaagttctggctggagaa
gtatatgtcccagccaggttcagagttgttagaatagagggtttagcaat
atacttcaccagtgcttttggcccttttgactttctcctgtctaagctga
gctcttcaggggggtctcccgctaccaaatctgatcctttttacttttgg
aagaagtcaaagcctttccttctttcctgttaacacaaattcagggcttc
tcttccagcatagcatctccgttgtctggcagtctgaagtcattgaaagt
ctagactgatccacattagcagcccctctcctacctaggtctgttttatt
ttgacctctcagagagggtgtgtaatgccatcataaccactgaacttata
accaccttcatcttgataactaaaaacaatgaaagcaatcgaggaaacaa
ttactgtttattgagacagggttttctctgtgtaacctgagctgttcttg
ggatttgtttgtagattaggctggctgtgaactcacaaggaactttctgt
ccctgcctttgtctcccgaatgaattgagatcaaaagggcttggattatg
gaattaattatttatggagcatagctttccttttctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_110698931_110699280
seq2: B6Ng01-307H08.b_53_402 (reverse)

seq1  CCTTCCCCCCCCCCCGACGAATCAGGAAACGCGGCCCAGGGCGCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCCCCCCCGACGAATCAGGAAACGCGGCCCAGGGCGCCACCTG  50

seq1  CCGGTGGTCGCAGGGTAGCAGGCGCAGATGCCTGCCCTTTAGTGGGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGGTCGCAGGGTAGCAGGCGCAGATGCCTGCCCTTTAGTGGGTGGA  100

seq1  AATCAGGCACTGGGGTTTATTTATTTATTTTATTTTATTTTTTTGGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCACTGGGGTTTATTTATTTATTTTATTTTATTTTTTTGGTTTT  150

seq1  TCGAGACAGGGTTTCTCAGTGTAGCCCTGGCTGTCCTGGAACTCACTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACAGGGTTTCTCAGTGTAGCCCTGGCTGTCCTGGAACTCACTCTG  200

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCAGGCACTGGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCAGGCACTGGGTTT  250

seq1  ATATGAATTGAAAAACCTCAAGTTTGGCACTTCAATTTGAAGTTTTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTGAAAAACCTCAAGTTTGGCACTTCAATTTGAAGTTTTTATG  300

seq1  TTTTCATTTGTAATCTTTAAGTGTATGCATACTCTCAACTTTCACCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTGTAATCTTTAAGTGTATGCATACTCTCAACTTTCACCTCCT  350

seq1: chr5_110545806_110546599
seq2: B6Ng01-307H08.g_357_1152

seq1  GTGCAAGGTGTACTGATCAGTTACTGCTCTTTGTTTGAGCAGGTGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGTGTACTGATCAGTTACTGCTCTTTGTTTGAGCAGGTGAAAGA  50

seq1  CAACTGTCTTTTTTTGGAAGTTAGTGTGATCATATAATCAAACTATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCTTTTTTTGGAAGTTAGTGTGATCATATAATCAAACTATAATA  100

seq1  TAAGTCTCCACTCATAACTTTTGAAAGATGGCATGTCATAATAAGTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCCACTCATAACTTTTGAAAGATGGCATGTCATAATAAGTCATG  150

seq1  AGAATTCTGTAGCCAACAATATCTATTGGCCATGTAAGTGGAAGTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTGTAGCCAACAATATCTATTGGCCATGTAAGTGGAAGTTCTGG  200

seq1  CTGGAGAAGTATATGTCCCAGCCAGGTTCAGAGTTGTTAGAATAGAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAGTATATGTCCCAGCCAGGTTCAGAGTTGTTAGAATAGAGGGT  250

seq1  TTAGCAATATACTTCACCAGTGCTTTTGGCCCTTTTGACTTTCTCCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATATACTTCACCAGTGCTTTTGGCCCTTTTGACTTTCTCCTGTC  300

seq1  TAAGCTGAGCTCTTCAGGGGGGTCTCCCGCTACCAAATCTGATCCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAGCTCTTCAGGGGGGTCTCCCGCTACCAAATCTGATCCTTTTT  350

seq1  ACTTTTGGAAGAAGTCAAAGCCTTTCCTTCTTTCCTGTTAACACAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGAAGAAGTCAAAGCCTTTCCTTCTTTCCTGTTAACACAAATTC  400

seq1  AGGGCTTCTCTTCCAGCATAGCATCTCCGTTGTCTGGCAGTCTGAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCTCTTCCAGCATAGCATCTCCGTTGTCTGGCAGTCTGAAGTCA  450

seq1  TTGAAAGTCTAGACTGATCCACATTAGCAGCCCCTCTCCTACCTAGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTCTAGACTGATCCACATTAGCAGCCCCTCTCCTACCTAGGTCT  500

seq1  GTTTTATTTTGACCTCTCAGAGAGGGTGTGTAATGCCATCATAACCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTGACCTCTCAGAGAGGGTGTGTAATGCCATCATAACCACTG  550

seq1  AACTTATAACCACCTTCATCTTGATAACTAAAAACAATGAAAGCAATCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATAACCACCTTCATCTTGATAACTAAAAACAATGAAAGCAATCGA  600

seq1  GGAAACAATTACTGTTTATTGAGACAGGG-TTTCTCTGTGTAACCTGAGC  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAAACAATTACTGTTTATTGAGACAGGGTTTTCTCTGTGTAACCTGAGC  650

seq1  TGTTCTT-GGATTTGTTTTGTAGATTAGGCTGGCTGTGAACTCACAAGGA  698
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGGGATTTG-TTTGTAGATTAGGCTGGCTGTGAACTCACAAGGA  699

seq1  ACCTTTCTGTCCCTGCCTTTGTCTCCCGAATGAATTGAGATCAAA--GGC  746
      | |||||||||||||||||||||||||||||||||||||||||||  |||
seq2  A-CTTTCTGTCCCTGCCTTTGTCTCCCGAATGAATTGAGATCAAAAGGGC  748

seq1  TTGGATTTATTGATTTATTTA-TTAT-GAGCATAGCTTTTCTTTTTCTAT  794
      ||||| |||| || ||| ||| |||| ||||||||| |||| ||||||||
seq2  TTGGA-TTATGGAATTAATTATTTATGGAGCATAGC-TTTCCTTTTCTAT  796