BAC Information

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BAC

Clone NameB6Ng01-307L19
Chromosome5 (Build37)
Map Location 82,747,990 - 82,853,561
singlet/doubletdoublet
Overlap geneEG433912
Upstream geneLphn3
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307L19.bB6Ng01-307L19.g
ACCGA100431GA100432
length1,0711,156
definitionB6Ng01-307L19.b B6Ng01-307L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,747,990 - 82,749,072)(82,852,409 - 82,853,561)
sequence
gaattcattcaagtaatgttgcctaaaataatgccagtatgagtatgttt
ttctctggaactttttttttttcttctcatactgagtatgtttttctctg
gaacttttttttttcttctcatactgaagactgacttcccttaatgtgga
aagtctcaagtatctgttctcttcttatacaatgccttctgtgtctgcct
tatgttcaaagacttggatttggctctcagatcatactggctacaaacag
ttaatgtctcatatttaaatcacttttgccacacttatgttaatacttgt
gactaaaatgaggagaaaatgacaacaaaactaaaatcatttcacctctg
aaacttcaactgcagctgaatattattcttttttttttttcatattctag
cttcctctaacatcttcggagtattatggacttgagattctagattagtt
tgaggaggaatgtgaatgctgttcataatataacagaataaagtaggatt
tttcaattggagaaacaaagtatatggacttatcagcatgcatctctatt
gttaagtagagagatacttaggatacaatcccctctcagaatgcttctgt
gaacatggatgaaatagatagccaatgaatgcagagttggtaacaagtca
atttacacttctcaatatttcttactttttcttaaaaaaatatctttaaa
ggtacttattgagtgaataattttaagcttgtcttcggagtatttttgga
tctgacatcaatattgcaaagtatctcaaatgtgtgggttatataaatga
tcatctaatggggtgctttgttttttttttaaacacttccttccaaagtg
ctagtagagcaagtaaagtgagccatgtcttttatactacagtgttgaca
tcatgctactctgtttagcactctgccaagatggagtgggaagatggctc
agtgagtaaagtgtttgctgctcatcctgtagcagattgtcagtttgcag
cctagatcacctgcagagagatcctaactgagcgatcatatttaccatat
gattgagctatattctctgtg
gaattcagatgtaatctagataataggttaatagacttattttatttttc
tttgcgaattccatacatgaacactgaatttacacctctcctgcaccttc
aacccgaacttgcttcatgcccctctcaattgtgtgatctcttctactct
aattaccattgttttaaatacacatacacacacagggacacatgcacata
catgctcacaaatcaatgcagttcaaaccaactttgtacatgtgtcaaga
gatggacattttgtcttagaacgcctggtgttgcttattcctcgaggaca
ctgtatttccctgttgcaaacagtcattggctacctgtagatcttcatct
tgcctggaaatttcttccatccaagtttgcattgtcattatactggtatt
atttaggcaaccatattgttggggttagtgtatatattttccattctgag
ttgacatatctgtaatacaacccatatatcaaaggctcaagaaaaatcat
gcaacatgacagaaaaactttaagagccagaagatcacagtaccaacaaa
gtcttccaaaaacgttaatagaatattgaagagaatattgaagcagtatt
gaatatatgtaaaatgataggataatatgtgcaagattcctacagttgct
tcctgttgaagcccagtacccttttttttaatggaagataatagtaaata
agcagaattgtatatgcaataaacgatttattacattatttttcttgctt
tcttttcattgctttgatgttgtgatgacttttactgattaacatttaaa
ataatgtacagtcttaaaatagatttgtctccagacattttaattatctc
aaatatattaaccagtataagaggaacaatcttaattattgggtgggaca
gtctctggaaaggtgatctgagactatataagatttgaagagagatctag
cactaaaaacctggcaagcatcattcttatttcttaagtgtgcgtgctgt
agaaccacactcaagattcaaattttttctcatctttttttttttttttt
ccctatccctgtaccaccactattgggcaagatgctagtagaaattaaaa
cagtggtgccagtttgttctttcctatatactcatcatgacctattttcc
tgaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82747990_82749072
seq2: B6Ng01-307L19.b_44_1114

seq1  GAATTCATTCAAGTAATGTTGCCTAAAATAATGCCAGTATGAGTATGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAAGTAATGTTGCCTAAAATAATGCCAGTATGAGTATGTTT  50

seq1  TTCTCTGGAACTTTTTTTTTTTCTTCTCATACTGAGTATGTTTTTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGAACTTTTTTTTTTTCTTCTCATACTGAGTATGTTTTTCTCTG  100

seq1  GAACTTTTTTTTTTCTTCTCATACTGAAGACTGACTTCCCTTAATGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTTTTTTTCTTCTCATACTGAAGACTGACTTCCCTTAATGTGGA  150

seq1  AAGTCTCAAGTATCTGTTCTCTTCTTATACAATGCCTTCTGTGTCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAAGTATCTGTTCTCTTCTTATACAATGCCTTCTGTGTCTGCCT  200

seq1  TATGTTCAAAGACTTGGATTTGGCTCTCAGATCATACTGGCTACAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAAAGACTTGGATTTGGCTCTCAGATCATACTGGCTACAAACAG  250

seq1  TTAATGTCTCATATTTAAATCACTTTTGCCACACTTATGTTAATACTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTCTCATATTTAAATCACTTTTGCCACACTTATGTTAATACTTGT  300

seq1  GACTAAAATGAGGAGAAAATGACAACAAAACTAAAATCATTTCACCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAATGAGGAGAAAATGACAACAAAACTAAAATCATTTCACCTCTG  350

seq1  AAACTTCAACTGCAGCTGAATATTATTCTTTTTTTTTTTTCATATTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAACTGCAGCTGAATATTATTCTTTTTTTTTTTTCATATTCTAG  400

seq1  CTTCCTCTAACATCTTCGGAGTATTATGGACTTGAGATTCTAGATTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTAACATCTTCGGAGTATTATGGACTTGAGATTCTAGATTAGTT  450

seq1  TGAGGAGGAATGTGAATGCTGTTCATAATATAACAGAATAAAGTAGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAATGTGAATGCTGTTCATAATATAACAGAATAAAGTAGGATT  500

seq1  TTTCAATTGGAGAAACAAAGTATATGGACTTATCAGCATGCATCTCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTGGAGAAACAAAGTATATGGACTTATCAGCATGCATCTCTATT  550

seq1  GTTAAGTAGAGAGATACTTAGGATACAATCCCCTCTCAGAATGCTTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTAGAGAGATACTTAGGATACAATCCCCTCTCAGAATGCTTCTGT  600

seq1  GAACATGGATGAAATAGATAGCCAATGAATGCAGAGTTGGTAACAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGATGAAATAGATAGCCAATGAATGCAGAGTTGGTAACAAGTCA  650

seq1  ATTTACACTTCTCAATATTTCTTACTTTTTCTTAAAAAAATATCTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACTTCTCAATATTTCTTACTTTTTCTTAAAAAAATATCTTTAAA  700

seq1  GGTACTTATTGAGTGAATAATTTTAAGCTTGTCTTCGGAGTATTTTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTATTGAGTGAATAATTTTAAGCTTGTCTTCGGAGTATTTTTGGA  750

seq1  TCTGACATCAATATTGCAAAGTATCTCAAATGTGTGGGTTATATAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATCAATATTGCAAAGTATCTCAAATGTGTGGGTTATATAAATGA  800

seq1  TCATCTAATGGGGTGCTTTGTTTTTTTTTTAAACACTTCCTTCCAAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAATGGGGTGCTTTGTTTTTTTTTTAAACACTTCCTTCCAAAGTG  850

seq1  CTAGTAGAGCAAGTAAAGTGAGCCATGTCTTTTATACTACAGTGTTGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGAGCAAGTAAAGTGAGCCATGTCTTTTATACTACAGTGTTGACA  900

seq1  TCATGCTACTCTGTTTAGCACTCTGCCAAGAAGGGAGTGGGAAGATGGCT  950
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  TCATGCTACTCTGTTTAGCACTCTGCCAAG-ATGGAGTGGGAAGATGGCT  949

seq1  CAGTGAGTAAAGTGTTTGCTGCTCATCCTTGTTAGCAGATTGTCAGTTTG  1000
      |||||||||||||||||||||||||||||   ||||||||||||||||| 
seq2  CAGTGAGTAAAGTGTTTGCTGCTCATCCT--GTAGCAGATTGTCAGTTT-  996

seq1  GCAGCCTAGAATCACCTGGCAGGAGGAGGATCCTAAACTGAGCGATCATA  1050
      ||||||||| ||||||| ||| |||   |||||| |||||||||||||||
seq2  GCAGCCTAG-ATCACCT-GCA-GAG--AGATCCT-AACTGAGCGATCATA  1040

seq1  TTTACCATAATGATTTGAGGCTATA-TCTCTGTG  1083
      |||||||| |||| |||| |||||| ||||||||
seq2  TTTACCAT-ATGA-TTGA-GCTATATTCTCTGTG  1071

seq1: chr5_82852409_82853561
seq2: B6Ng01-307L19.g_65_1220 (reverse)

seq1  CTTTCA-GAAAATAAGTCATGATGAGAAAATAAAGAGGAAAGAACCAAAA  49
      |||||| ||||||| |||||||||||    || | ||||||||||  |||
seq2  CTTTCAGGAAAATAGGTCATGATGAG----TATATAGGAAAGAAC--AAA  44

seq1  CT-GCA-CACTGTTTTATATTCTACTAGCATCCTGCCCAATAGT-GTGGT  96
      || ||| ||||||||||  ||||||||||||| ||||||||||| |||||
seq2  CTGGCACCACTGTTTTAATTTCTACTAGCATCTTGCCCAATAGTGGTGGT  94

seq1  ACA-GGATAGG---AAAAAAAAAAAAAAGATGAG-AAAAATTTGAATCTT  141
      ||| |||||||   |||||||||||||||||||| |||||||||||||||
seq2  ACAGGGATAGGGAAAAAAAAAAAAAAAAGATGAGAAAAAATTTGAATCTT  144

seq1  GAGTGTGGTTCTACAGCACGCACACTTAAGAAATAAGAATGATGCTTGCC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGTTCTACAGCACGCACACTTAAGAAATAAGAATGATGCTTGCC  194

seq1  AGGTTTTTAGTGCTAGATCTTCTCTTCAAATCTTATATAGTCTCAGATCA  241
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGTTTTTAGTGCTAGATC-TCTCTTCAAATCTTATATAGTCTCAGATCA  243

seq1  CCTTTCCAGAGACTGTCCCA-CCAATAATTAAGATTGTTCCTCTTATACT  290
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTTTCCAGAGACTGTCCCACCCAATAATTAAGATTGTTCCTCTTATACT  293

seq1  GGTTAATATATTTGAGATAATTAAAATGTCTGGAGACAAATCTATTTTAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATATATTTGAGATAATTAAAATGTCTGGAGACAAATCTATTTTAA  343

seq1  GACTGTACATTATTTTAAATGTTAATCAGTAAAAGTCATCACAACATCAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTACATTATTTTAAATGTTAATCAGTAAAAGTCATCACAACATCAA  393

seq1  AGCAATGAAAAGAAAGCAAGAAAAATAATGTAATAAATCGTTTATTGCAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAAAAGAAAGCAAGAAAAATAATGTAATAAATCGTTTATTGCAT  443

seq1  ATACAATTCTGCTTATTTACTATTATCTTCCATTAAAAAAAAGGGTACTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTCTGCTTATTTACTATTATCTTCCATTAAAAAAAAGGGTACTG  493

seq1  GGCTTCAACAGGAAGCAACTGTAGGAATCTTGCACATATTATCCTATCAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAACAGGAAGCAACTGTAGGAATCTTGCACATATTATCCTATCAT  543

seq1  TTTACATATATTCAATACTGCTTCAATATTCTCTTCAATATTCTATTAAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATATTCAATACTGCTTCAATATTCTCTTCAATATTCTATTAAC  593

seq1  GTTTTTGGAAGACTTTGTTGGTACTGTGATCTTCTGGCTCTTAAAGTTTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGAAGACTTTGTTGGTACTGTGATCTTCTGGCTCTTAAAGTTTT  643

seq1  TCTGTCATGTTGCATGATTTTTCTTGAGCCTTTGATATATGGGTTGTATT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATGTTGCATGATTTTTCTTGAGCCTTTGATATATGGGTTGTATT  693

seq1  ACAGATATGTCAACTCAGAATGGAAAATATATACACTAACCCCAACAATA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATGTCAACTCAGAATGGAAAATATATACACTAACCCCAACAATA  743

seq1  TGGTTGCCTAAATAATACCAGTATAATGACAATGCAAACTTGGATGGAAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCTAAATAATACCAGTATAATGACAATGCAAACTTGGATGGAAG  793

seq1  AAATTTCCAGGCAAGATGAAGATCTACAGGTAGCCAATGACTGTTTGCAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCAGGCAAGATGAAGATCTACAGGTAGCCAATGACTGTTTGCAA  843

seq1  CAGGGAAATACAGTGTCCTCGAGGAATAAGCAACACCAGGCGTTCTAAGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATACAGTGTCCTCGAGGAATAAGCAACACCAGGCGTTCTAAGA  893

seq1  CAAAATGTCCATCTCTTGACACATGTACAAAGTTGGTTTGAACTGCATTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTCCATCTCTTGACACATGTACAAAGTTGGTTTGAACTGCATTG  943

seq1  ATTTGTGAGCATGTATGTGCATGTGTCCCTGTGTGTGTATGTGTATTTAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAGCATGTATGTGCATGTGTCCCTGTGTGTGTATGTGTATTTAA  993

seq1  AACAATGGTAATTAGAGTAGAAGAGATCACACAATTGAGAGGGGCATGAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGTAATTAGAGTAGAAGAGATCACACAATTGAGAGGGGCATGAA  1043

seq1  GCAAGTTCGGGTTGAAGGTGCAGGAGAGGTGTAAATTCAGTGTTCATGTA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTCGGGTTGAAGGTGCAGGAGAGGTGTAAATTCAGTGTTCATGTA  1093

seq1  TGGAATTCGCAAAGAAAAATAAAATAAGTCTATTAACCTATTATCTAGAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCGCAAAGAAAAATAAAATAAGTCTATTAACCTATTATCTAGAT  1143

seq1  TACATCTGAATTC  1153
      |||||||||||||
seq2  TACATCTGAATTC  1156