BAC Information

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BAC

Clone NameB6Ng01-307O05
Chromosome5 (Build37)
Map Location 33,797,954 - 33,957,078
singlet/doubletdoublet
Overlap gene2410018C17Rik
Upstream geneLOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284
Downstream geneSlbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307O05.bB6Ng01-307O05.g
ACCGA100535GA100536
length1,0631,117
definitionB6Ng01-307O05.b B6Ng01-307O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,797,954 - 33,799,020)(33,955,956 - 33,957,078)
sequence
gaattccataaagaacacacagtaacctttatccagatgaaagaactttg
atacacgtatataagatcgtaacagagatttctcttgctgagcattgatg
ttttattttgaaaatagttacttgggctggggagatggctcagttggcaa
agctttgcaagcataggatctgagttcgagtcctcagcatctatgtaaaa
acaccatcatggtgtgcgtgcttgtaatcccagcacccaggagcactggg
gctcactgaccacccagcctagcctagctgccaagttcaggacagtaaga
gaccctgttacatagaggtgggtggcgtctttgagaataacacttgaggt
tgttcttcagttcctgcacatatgtccacacaatgcatgcacacctgcgt
gggtagagcggggcggacagtctgagtgctcttgtcatctctcaaggatc
acacatcctctgggtcctgctgcagtctgctccagacctatggctttggg
acacagctgggctctcttaggtccacttttccttgtccagaactcatctc
actgactcaaacacattttgtggctctttcctagccagtcctctcggtct
cagccggagccagctcagctcctcccacctcttccccacgtgcggaagtc
tgcttcctgctttcttctgtgttttcactgctgttgcaaaagcagcaaca
agcagcaaaggggtcccagctgggctccctggtctagtagagtctcttga
ggcagggccacgctccatcaatgtggaccttggtctttgacacggttttg
cacggaccggacattgtgacagccactgaattataaagagcagccctgtt
cattcatgtatggtacaaagtggtcatcaaatcagcctgagcaaatctgg
acatgtcacctcatgtactggtgactcttcttctatgaatatgcacaccc
tttcgtgcacgccacagctgtgtggaagtttctagctcccagataagaga
aaacccgggtcttgctcatgttgagtttggcactgggcacaaaatgttaa
atggtcatcgaga
gaattctgtggctgctcaccagatcggccagagtaagtaagtcatcctgt
gatcctgctacccgtgtccagaaccctgtcgcacaatttgtcaacacaga
ttcattcacctgcgttagctttagggagtgggtctttctggtttttattt
ttttaaccatgaagtcaattatttattttattaatttataactattagat
atgttgttattgtttgagacagggtttcacagtgtaaccatggctggcga
gaaactagctttgtaaactaggctccacttgaactcacagagatctagct
gcctctgcctcctgagtggcgggatataggtatgtgctatcacatctggt
ggttacctatttttaatgtttaatatttgtaacttgcttttcgccagatt
tattttgatgttttgtctttgtgccttgacttgaaactaacacagataca
ctctgagtacagctagggattccagaaagacaaagcaaagaaactacgca
ggcaactcttaaacaccgtccttaaggccgtgtgtgatgatgttgcccaa
gttgggcagtgttcatgcccagactgcaggcagaagtcatcctgtatttg
ggtgtttactcttcccaatacatttttcataaaatttactcttggaaaag
tagattcacttttcaagctagcctaaacgtaattaagagtgttcttgagc
caggcgtggtggcgcatgcctttaatcccagcactcgggaggcagaggca
ggcggatttctgagttcgaggccagcctggtctacagagtgagttccagg
acagccagagctctatatagagaaacctttgtctcgaaaaacccaaaata
aaaaaaaaaaaaaaaaaaaaaaaagagttgttggttgtttttttgagaca
ggtttctttggcattagccttggcttgttctagaaacagactggccttga
gcttacctgcttctgccctcctgagtgctgggattaaagtggttgtgcac
caccatccagcgacagttttcttattaacaaactggatatacctttaagg
taaaattcaagagtaacttcaattagctaagtcattacctatttccattg
ctccaatgctatgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_33797954_33799020
seq2: B6Ng01-307O05.b_46_1108

seq1  GAATTCCATAAAGAACACACAGTAACCTTTATCCAGATGAAAGAACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAGAACACACAGTAACCTTTATCCAGATGAAAGAACTTTG  50

seq1  ATACACGTATATAAGATCGTAACAGAGATTTCTCTTGCTGAGCATTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGTATATAAGATCGTAACAGAGATTTCTCTTGCTGAGCATTGATG  100

seq1  TTTTATTTTGAAAATAGTTACTTGGGCTGGGGAGATGGCTCAGTTGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGAAAATAGTTACTTGGGCTGGGGAGATGGCTCAGTTGGCAA  150

seq1  AGCTTTGCAAGCATAGGATCTGAGTTCGAGTCCTCAGCATCTATGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCAAGCATAGGATCTGAGTTCGAGTCCTCAGCATCTATGTAAAA  200

seq1  ACACCATCATGGTGTGCGTGCTTGTAATCCCAGCACCCAGGAGCACTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCATGGTGTGCGTGCTTGTAATCCCAGCACCCAGGAGCACTGGG  250

seq1  GCTCACTGACCACCCAGCCTAGCCTAGCTGCCAAGTTCAGGACAGTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGACCACCCAGCCTAGCCTAGCTGCCAAGTTCAGGACAGTAAGA  300

seq1  GACCCTGTTACATAGAGGTGGGTGGCGTCTTTGAGAATAACACTTGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTTACATAGAGGTGGGTGGCGTCTTTGAGAATAACACTTGAGGT  350

seq1  TGTTCTTCAGTTCCTGCACATATGTCCACACAATGCATGCACACCTGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCAGTTCCTGCACATATGTCCACACAATGCATGCACACCTGCGT  400

seq1  GGGTAGAGCGGGGCGGACAGTCTGAGTGCTCTTGTCATCTCTCAAGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGCGGGGCGGACAGTCTGAGTGCTCTTGTCATCTCTCAAGGATC  450

seq1  ACACATCCTCTGGGTCCTGCTGCAGTCTGCTCCAGACCTATGGCTTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCTCTGGGTCCTGCTGCAGTCTGCTCCAGACCTATGGCTTTGGG  500

seq1  ACACAGCTGGGCTCTCTTAGGTCCACTTTTCCTTGTCCAGAACTCATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGGGCTCTCTTAGGTCCACTTTTCCTTGTCCAGAACTCATCTC  550

seq1  ACTGACTCAAACACATTTTGTGGCTCTTTCCTAGCCAGTCCTCTCGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTCAAACACATTTTGTGGCTCTTTCCTAGCCAGTCCTCTCGGTCT  600

seq1  CAGCCGGAGCCAGCTCAGCTCCTCCCACCTCTTCCCCACGTGCGGAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGAGCCAGCTCAGCTCCTCCCACCTCTTCCCCACGTGCGGAAGTC  650

seq1  TGCTTCCTGCTTTCTTCTGTGTTTTCACTGCTGTTGCAAAAGCAGCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGCTTTCTTCTGTGTTTTCACTGCTGTTGCAAAAGCAGCAACA  700

seq1  AGCAGCAAAGGGGTCCCAGCTGGGCTCCCTGGTCTAGTAGAGTCTCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAGGGGTCCCAGCTGGGCTCCCTGGTCTAGTAGAGTCTCTTGA  750

seq1  GGCAGGGCCACGCTCCATCAATGTGGACCTTGGTCTTTGACACGGTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCCACGCTCCATCAATGTGGACCTTGGTCTTTGACACGGTTTTG  800

seq1  CACGGACCGGACATTGTGACAGCCACTGAATTATAAGGAGCAGCCCTGTT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACGGACCGGACATTGTGACAGCCACTGAATTATAAAGAGCAGCCCTGTT  850

seq1  CATTCATGTATGGTACAAAGTGGTCATCAAATCAGCCTGAGCAAATCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGTATGGTACAAAGTGGTCATCAAATCAGCCTGAGCAAATCTGG  900

seq1  ACATGTCACCTCATGTACTGGTGACTCTTCTTCTATGAATATGCACACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCACCTCATGTACTGGTGACTCTTCTTCTATGAATATGCACACCC  950

seq1  CTTCGTGCACGCCACAGCTGTGTGGAAGTTTCTAGCTCCCAGGAAGGAAG  1000
       |||||||||||||||||||||||||||||||||||||||||     |||
seq2  TTTCGTGCACGCCACAGCTGTGTGGAAGTTTCTAGCTCCCAG---ATAAG  997

seq1  AGAAAACCC-GGTCTTGCTCATGGTGAGTTTGGCACTGGGCACAAAATGT  1049
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  AGAAAACCCGGGTCTTGCTCATGTTGAGTTTGGCACTGGGCACAAAATGT  1047

seq1  TAAAAGGGGCCATCGAGA  1067
      ||||   || ||||||||
seq2  TAAA--TGGTCATCGAGA  1063

seq1: chr5_33955956_33957078
seq2: B6Ng01-307O05.g_65_1181 (reverse)

seq1  CAGTCATAGCAATGGAGACAATG--AATAGTTAATGACTTTTAGCTTTAT  48
      ||||||||||| ||||| |||||  ||||| |||||||  ||||| | ||
seq2  CAGTCATAGCATTGGAG-CAATGGAAATAGGTAATGAC--TTAGC-TAAT  46

seq1  TAAAATTTAACTCTTTGAAATTTTACTTTTAAAAGTTATATTCAGTTTTG  98
      | || ||  ||||||   |||||||| ||  |||| ||||| ||||||  
seq2  TGAAGTT--ACTCTT--GAATTTTACCTT--AAAGGTATATCCAGTTTGT  90

seq1  TTATTAG-AAACTGTCGCTGGATGGTGGTG-ACACACACTTTAATCCCAG  146
      | || || |||||||||||||||||||||| |||  ||||||||||||||
seq2  TAATAAGAAAACTGTCGCTGGATGGTGGTGCACAACCACTTTAATCCCAG  140

seq1  CACTCAGGA-GGCAGAGGCAGGTAAGCTCAAGGCCAGTCTG-TTCTAGAA  194
      ||||||||| |||||| |||||||||||||||||||||||| ||||||||
seq2  CACTCAGGAGGGCAGAAGCAGGTAAGCTCAAGGCCAGTCTGTTTCTAGAA  190

seq1  C-AGCCAAGGCTAATG-CAAAGAAACCCTGTCTCAAAAAAACAA-CAAC-  240
      | |||||||||||||| |||||||| |||||||||||||||||| |||| 
seq2  CAAGCCAAGGCTAATGCCAAAGAAA-CCTGTCTCAAAAAAACAACCAACA  239

seq1  ACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCG  290
      ||||      ||||||||||||||||||||||||| |||| |||||||||
seq2  ACTC------TTTTTTTTTTTTTTTTTTTTTTTTTATTTTGGGTTTTTCG  283

seq1  AGAC-AAGGTTTCTCTATATAGAGCTCTGGCTGTCCTGGAACTCACTCTG  339
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGGTTTCTCTATATAGAGCTCTGGCTGTCCTGGAACTCACTCTG  333

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGA  383

seq1  GTGCTGGGATTAAAGGCATGCGCCACCACGCCTGGCTCAAGAACACTCTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCATGCGCCACCACGCCTGGCTCAAGAACACTCTT  433

seq1  AATTACGTTTAGGCTAGCTTGAAAAGTGAATCTACTTTTCCAAGAGTAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACGTTTAGGCTAGCTTGAAAAGTGAATCTACTTTTCCAAGAGTAAA  483

seq1  TTTTATGAAAAATGTATTGGGAAGAGTAAACACCCAAATACAGGATGACT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAAAAATGTATTGGGAAGAGTAAACACCCAAATACAGGATGACT  533

seq1  TCTGCCTGCAGTCTGGGCATGAACACTGCCCAACTTGGGCAACATCATCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCAGTCTGGGCATGAACACTGCCCAACTTGGGCAACATCATCA  583

seq1  CACACGGCCTTAAGGACGGTGTTTAAGAGTTGCCTGCGTAGTTTCTTTGC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGCCTTAAGGACGGTGTTTAAGAGTTGCCTGCGTAGTTTCTTTGC  633

seq1  TTTGTCTTTCTGGAATCCCTAGCTGTACTCAGAGTGTATCTGTGTTAGTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTCTGGAATCCCTAGCTGTACTCAGAGTGTATCTGTGTTAGTT  683

seq1  TCAAGTCAAGGCACAAAGACAAAACATCAAAATAAATCTGGCGAAAAGCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCAAGGCACAAAGACAAAACATCAAAATAAATCTGGCGAAAAGCA  733

seq1  AGTTACAAATATTAAACATTAAAAATAGGTAACCACCAGATGTGATAGCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAATATTAAACATTAAAAATAGGTAACCACCAGATGTGATAGCA  783

seq1  CATACCTATATCCCGCCACTCAGGAGGCAGAGGCAGCTAGATCTCTGTGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTATATCCCGCCACTCAGGAGGCAGAGGCAGCTAGATCTCTGTGA  833

seq1  GTTCAAGTGGAGCCTAGTTTACAAAGCTAGTTTCTCGCCAGCCATGGTTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTGGAGCCTAGTTTACAAAGCTAGTTTCTCGCCAGCCATGGTTA  883

seq1  CACTGTGAAACCCTGTCTCAAACAATAACAACATATCTAATAGTTATAAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAAACCCTGTCTCAAACAATAACAACATATCTAATAGTTATAAA  933

seq1  TTAATAAAATAAATAATTGACTTCATGGTTAAAAAAATAAAAACCAGAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAATAAATAATTGACTTCATGGTTAAAAAAATAAAAACCAGAAA  983

seq1  GACCCACTCCCTAAAGCTAACGCAGGTGAATGAATCTGTGTTGACAAATT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTCCCTAAAGCTAACGCAGGTGAATGAATCTGTGTTGACAAATT  1033

seq1  GTGCGACAGGGTTCTGGACACGGGTAGCAGGATCACAGGATGACTTACTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGACAGGGTTCTGGACACGGGTAGCAGGATCACAGGATGACTTACTT  1083

seq1  ACTCTGGCCGATCTGGTGAGCAGCCACAGAATTC  1123
      ||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCCGATCTGGTGAGCAGCCACAGAATTC  1117