BAC Information

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BAC

Clone NameB6Ng01-308B09
Chromosome5 (Build37)
Map Location 80,670,346 - 80,794,793
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308B09.bB6Ng01-308B09.g
ACCGA100679GA100680
length442826
definitionB6Ng01-308B09.b B6Ng01-308B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,670,346 - 80,670,793)(80,793,968 - 80,794,793)
sequence
tctgggctctgtatatatccggaatatactatttaaaactccaaggtgct
tcttttcatctgctgagtggaatgtcttgtcttttcaggcatccctgttg
acctaattatccctttcttttgaactacagttaatgttgaatgtaggaaa
agagaagagctacagttaacacgcaactgaactgagtctgattagcatgt
tcccacagcacaaagaccctgagagtagcaagcttaaagctttcatggga
gttctggtgtagttatcgttctagaaaaaaaaaatgtttttacacagtca
tctttttcaaagcaattattattaccagctttgtataagaaggtattgtc
agtgttttcttaccctgcaaaaccaaataccacctccaagttttgtggta
ttagtgaacaaaaaggtgtgagggaggggcaggaggaggaag

gaattctgtgaaggtagatgttccttgatgtaatgattcttaaactatta
aaaaccgaggcataggggcacagcacagcacagtcctaatgtcccaggtg
catgctatgtgttctgatcttggaaacaattcaataactgcacaatggca
gttccagattattgcttgacttgcaaagaaagtttgaagaaaatattaga
aaatgaattagagccaacattggaaccccacaaaaggaaaaaaaaaaact
attgacagtataaaataagttttgtaccacttttgagagcgatgcctgga
taagaaagtatagaatacataaatttatatactaataaaactaagtcaaa
acactgggactcttaggagggttattgtgtgcaatgtagaaatctaacag
aactcacagttaaggatcaacttgattctttctggccactgcctggcagc
tttgcccatgtcatttatcattagagcttcacgagaaaatgcaagtagct
gacctcagagctctgaactctgaagtataataagctaaaagttaaaattt
aaataatgataagttttcaattattattattttgactacaggctcagaaa
tagggaaacttgaaactttggggaatatttgtaattcttgattctttgtg
ggatgtggttattcttttgaatttgatttggtaacgatttcacaatgtct
tttttctacctgcttttagaatatcaataaaagattatggcaagaataaa
tcaagagagcaagagaagagcatatgaagagtgtgtgaggagagaatgtg
aggtatgaatggagagtgtgtgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80670346_80670793
seq2: B6Ng01-308B09.b_48_495

seq1  GAATTCTCTGGGCTCTGTATATATCCGGAATATACTATTTAAAACTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGCTCTGTATATATCCGGAATATACTATTTAAAACTCCAA  50

seq1  GGTGCTTCTTTTCATCTGCTGAGTGGAATGTCTTGTCTTTTCAGGCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCTTTTCATCTGCTGAGTGGAATGTCTTGTCTTTTCAGGCATCC  100

seq1  CTGTTGACCTAATTATCCCTTTCTTTTGAACTACAGTTAATGTTGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACCTAATTATCCCTTTCTTTTGAACTACAGTTAATGTTGAATGT  150

seq1  AGGAAAAGAGAAGAGCTACAGTTAACACGCAACTGAACTGAGTCTGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAGAAGAGCTACAGTTAACACGCAACTGAACTGAGTCTGATTA  200

seq1  GCATGTTCCCACAGCACAAAGACCCTGAGAGTAGCAAGCTTAAAGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTCCCACAGCACAAAGACCCTGAGAGTAGCAAGCTTAAAGCTTTC  250

seq1  ATGGGAGTTCTGGTGTAGTTATCGTTCTAGAAAAAAAAAATGTTTTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTTCTGGTGTAGTTATCGTTCTAGAAAAAAAAAATGTTTTTACA  300

seq1  CAGTCATCTTTTTCAAAGCAATTATTATTACCAGCTTTGTATAAGAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCTTTTTCAAAGCAATTATTATTACCAGCTTTGTATAAGAAGGT  350

seq1  ATTGTCAGTGTTTTCTTACCCTGCAAAACCAAATACCACCTCCAAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGTGTTTTCTTACCCTGCAAAACCAAATACCACCTCCAAGTTTT  400

seq1  GTGGTATTAGTGAACAAAAAGGTGTGAGGGAGGGGCAGGAGGAGGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATTAGTGAACAAAAAGGTGTGAGGGAGGGGCAGGAGGAGGAAG  448


seq1: chr5_80793968_80794793
seq2: B6Ng01-308B09.g_68_893 (reverse)

seq1  CACTCACACACTCTCCATTCATACCTCACATTCTCTCCTCACACACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACACTCTCCATTCATACCTCACATTCTCTCCTCACACACTCTT  50

seq1  CATATGCTCTTCTCTTGCTCTCTTGATTTATTCTTGCCATAATCTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTCTTCTCTTGCTCTCTTGATTTATTCTTGCCATAATCTTTTAT  100

seq1  TGATATTCTAAAAGCAGGTAGAAAAAAGACATTGTGAAATCGTTACCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCTAAAAGCAGGTAGAAAAAAGACATTGTGAAATCGTTACCAAA  150

seq1  TCAAATTCAAAAGAATAACCACATCCCACAAAGAATCAAGAATTACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCAAAAGAATAACCACATCCCACAAAGAATCAAGAATTACAAAT  200

seq1  ATTCCCCAAAGTTTCAAGTTTCCCTATTTCTGAGCCTGTAGTCAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCAAAGTTTCAAGTTTCCCTATTTCTGAGCCTGTAGTCAAAATAA  250

seq1  TAATAATTGAAAACTTATCATTATTTAAATTTTAACTTTTAGCTTATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTGAAAACTTATCATTATTTAAATTTTAACTTTTAGCTTATTAT  300

seq1  ACTTCAGAGTTCAGAGCTCTGAGGTCAGCTACTTGCATTTTCTCGTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAGTTCAGAGCTCTGAGGTCAGCTACTTGCATTTTCTCGTGAAG  350

seq1  CTCTAATGATAAATGACATGGGCAAAGCTGCCAGGCAGTGGCCAGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGATAAATGACATGGGCAAAGCTGCCAGGCAGTGGCCAGAAAGA  400

seq1  ATCAAGTTGATCCTTAACTGTGAGTTCTGTTAGATTTCTACATTGCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTTGATCCTTAACTGTGAGTTCTGTTAGATTTCTACATTGCACAC  450

seq1  AATAACCCTCCTAAGAGTCCCAGTGTTTTGACTTAGTTTTATTAGTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCTCCTAAGAGTCCCAGTGTTTTGACTTAGTTTTATTAGTATAT  500

seq1  AAATTTATGTATTCTATACTTTCTTATCCAGGCATCGCTCTCAAAAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATGTATTCTATACTTTCTTATCCAGGCATCGCTCTCAAAAGTGG  550

seq1  TACAAAACTTATTTTATACTGTCAATAGTTTTTTTTTTTCCTTTTGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACTTATTTTATACTGTCAATAGTTTTTTTTTTTCCTTTTGTGGG  600

seq1  GTTCCAATGTTGGCTCTAATTCATTTTCTAATATTTTCTTCAAACTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATGTTGGCTCTAATTCATTTTCTAATATTTTCTTCAAACTTTCT  650

seq1  TTGCAAGTCAAGCAATAATCTGGAACTGCCATTGTGCAGTTATTGAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTCAAGCAATAATCTGGAACTGCCATTGTGCAGTTATTGAATTG  700

seq1  TTTCCAAGATCAGAACACATAGCATGCACCTGGGACATTAGGACTGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGATCAGAACACATAGCATGCACCTGGGACATTAGGACTGTGCT  750

seq1  GTGCTGTGCCCCTATGCCTCGGTTTTTAATAGTTTAAGAATCATTACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGCCCCTATGCCTCGGTTTTTAATAGTTTAAGAATCATTACATC  800

seq1  AAGGAACATCTACCTTCACAGAATTC  826
      ||||||||||||||||||||||||||
seq2  AAGGAACATCTACCTTCACAGAATTC  826


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