BAC Information

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BAC

Clone NameB6Ng01-308I20
Chromosome5 (Build37)
Map Location 78,514,101 - 78,515,206
singlet/doubletsinglet
Overlap genenone
Upstream geneHod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308I20.bB6Ng01-308I20.g
ACCGA101023GA101024
length1,0871,161
definitionB6Ng01-308I20.b B6Ng01-308I20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagctcaggtttccaatataaatcatgagctgaagcctcagga
cattcattcaagtccaggacctaataagaaagttataaatcacttgctct
cctccccagacaagcccagcttgtgaaatgagccaggtgtgataagcaag
gatatgcaccaacatcagtagcatcttgagtaactagaccatctttgaga
atgttgtctctcacacgtaaataaagaaatttagagacacttccataagc
aatgagtacaaatgtgatccatatacaacaagggtcacaaacaaacacag
ttcaattttgaaatatcccctaacgcctccatgacttatctttcttttat
cgaaatctagatgagcaaaggcatatttttaaaagggtccaaaatattta
aatatcaaaaaaaagaaatctccagtgtccattaaatagtattatttaat
gagctctttcttcaatatccacaggcatataagaaatgcctacacaagtg
taatgacttgtgctgaatgccacattccggggagagttataaggatgctc
tttactgcaataattcaatttgattcacgtgagttattcccttatgagga
atctctctgttgcttttaagattatagtaacaaccatgctgatcattata
tagtggccaaaagaagtgtccccagtgtcatgtgggtgtgattactgcaa
ctctgcttaaaagatgaggacaatgacttctggagaggaaactataatgg
cggtctatatgagcatgcttgaaccagtgcattgtaattgatggtaggca
gaaatcaactcaagcaaggagctgaatagcagaatacagtccttgttctg
aaaaaagtatcttagagtcttatgcttgacagcaaatcctcaccatcaat
caagaagcactggcacaacttcaaatgcatcatccaagttttggagttgt
ggtggttggatgagacctctccctcaaagactctgacatttgatgcctgc
tcccagtagtgatgatattggatgttagagtatgtctgctgagaaggtat
gtcactggagtagattgaagctaactttgtgtctctt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaagaaccctgagat
tccacctcacaccagtcagaatggctaagatcagaaattcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcggccttatttataatagcccgaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggtcctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtattcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgttgagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggccctagcaaa
cacagaagtggatgctcacagtcagctaatggatggataacaggctccca
atggaggagctagtgaaagaacccaaggagctaacgggatctgcacctat
agtggacacattatgaactaacaagtacccggagctctgactctagctgc
atatgtatcaaaaatgctagtagcatcactgcaagagaggtccaatgaac
cgcaactttatgcctcagtccattggcacgcctatgctagaaggcagtta
ggtgtggggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78514101_78515206
seq2: B6Ng01-308I20.b_48_1134 (reverse)

seq1  AAGAGAACACAAAGTTTAAGCTCTCAATTCCTACTCCAGTGACATACTTT  50
      ||||| ||||||||||  |||| |||||  ||||||||||||||||| ||
seq2  AAGAG-ACACAAAGTT--AGCT-TCAAT--CTACTCCAGTGACATACCTT  44

seq1  CTCCAGCAAGACCATACCTCCTAAACATTCCCAAATATCATCACTAACTG  100
      || |||| ||| |||| |||   |||||   | |||||||||||| ||||
seq2  CT-CAGC-AGA-CATA-CTC--TAACAT---CCAATATCATCACT-ACTG  84

seq1  GGAGCCAGGCATTCAAATGTCAGAGTCTTTGAGGGAGAGGTCTCATCCAA  150
      |||| |||||| |||||||||||||||||||||||||||||||||||| |
seq2  GGAG-CAGGCA-TCAAATGTCAGAGTCTTTGAGGGAGAGGTCTCATCC-A  131

seq1  ACCACCACAACTCCAAAACTTGGATGATGCATTTGAAGTTGTGCCAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACAACTCCAAAACTTGGATGATGCATTTGAAGTTGTGCCAGTGC  181

seq1  TTCTTGATTGATGGTGAGGATTTGCTGTCAAGCATAAGACTCTAAGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATTGATGGTGAGGATTTGCTGTCAAGCATAAGACTCTAAGATAC  231

seq1  TTTTTTCAGAACAAGGACTGTATTCTGCTATTCAGCTCCTTGCTTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGAACAAGGACTGTATTCTGCTATTCAGCTCCTTGCTTGAGTT  281

seq1  GATTTCTGCCTACCATCAATTACAATGCACTGGTTCAAGCATGCTCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGCCTACCATCAATTACAATGCACTGGTTCAAGCATGCTCATAT  331

seq1  AGACCGCCATTATAGTTTCCTCTCCAGAAGTCATTGTCCTCATCTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGCCATTATAGTTTCCTCTCCAGAAGTCATTGTCCTCATCTTTTAA  381

seq1  GCAGAGTTGCAGTAATCACACCCACATGACACTGGGGACACTTCTTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTGCAGTAATCACACCCACATGACACTGGGGACACTTCTTTTGG  431

seq1  CCACTATATAATGATCAGCATGGTTGTTACTATAATCTTAAAAGCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATATAATGATCAGCATGGTTGTTACTATAATCTTAAAAGCAACAG  481

seq1  AGAGATTCCTCATAAGGGAATAACTCACGTGAATCAAATTGAATTATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCCTCATAAGGGAATAACTCACGTGAATCAAATTGAATTATTGC  531

seq1  AGTAAAGAGCATCCTTATAACTCTCCCCGGAATGTGGCATTCAGCACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAGCATCCTTATAACTCTCCCCGGAATGTGGCATTCAGCACAAG  581

seq1  TCATTACACTTGTGTAGGCATTTCTTATATGCCTGTGGATATTGAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACACTTGTGTAGGCATTTCTTATATGCCTGTGGATATTGAAGAAA  631

seq1  GAGCTCATTAAATAATACTATTTAATGGACACTGGAGATTTCTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATTAAATAATACTATTTAATGGACACTGGAGATTTCTTTTTTTT  681

seq1  GATATTTAAATATTTTGGACCCTTTTAAAAATATGCCTTTGCTCATCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAAATATTTTGGACCCTTTTAAAAATATGCCTTTGCTCATCTAG  731

seq1  ATTTCGATAAAAGAAAGATAAGTCATGGAGGCGTTAGGGGATATTTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGATAAAAGAAAGATAAGTCATGGAGGCGTTAGGGGATATTTCAAA  781

seq1  ATTGAACTGTGTTTGTTTGTGACCCTTGTTGTATATGGATCACATTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTGTGTTTGTTTGTGACCCTTGTTGTATATGGATCACATTTGTA  831

seq1  CTCATTGCTTATGGAAGTGTCTCTAAATTTCTTTATTTACGTGTGAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGCTTATGGAAGTGTCTCTAAATTTCTTTATTTACGTGTGAGAGA  881

seq1  CAACATTCTCAAAGATGGTCTAGTTACTCAAGATGCTACTGATGTTGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCTCAAAGATGGTCTAGTTACTCAAGATGCTACTGATGTTGGTG  931

seq1  CATATCCTTGCTTATCACACCTGGCTCATTTCACAAGCTGGGCTTGTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTTGCTTATCACACCTGGCTCATTTCACAAGCTGGGCTTGTCTG  981

seq1  GGGAGGAGAGCAAGTGATTTATAACTTTCTTATTAGGTCCTGGACTTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGAGCAAGTGATTTATAACTTTCTTATTAGGTCCTGGACTTGAA  1031

seq1  TGAATGTCCTGAGGCTTCAGCTCATGATTTATATTGGAAACCTGAGCTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCCTGAGGCTTCAGCTCATGATTTATATTGGAAACCTGAGCTAT  1081

seq1  GAATTC  1106
      ||||||
seq2  GAATTC  1087