BAC Information

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BAC

Clone NameB6Ng01-308J04
Chromosome5 (Build37)
Map Location 83,772,437 - 83,773,501
singlet/doubletsinglet
Overlap geneSrd5a2l2
Upstream geneLOC100039434
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308J04.bB6Ng01-308J04.g
ACCGA101037GA101038
length8731,066
definitionB6Ng01-308J04.b B6Ng01-308J04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctccatgtgtactctttggttgttgatttactccctgggaactc
tggggtatcagatttgttgatattgttgttctccctatagggtttcaaac
tcctttctgtaactcctccattggggaccctgtgatcagtccaatggttg
gcagtcaagatctacctctgtatttgtcaggctctggcagatcttctcag
gagacagctatatccggctcctatcagcatgtacttcttggcatctacaa
tagtgtctgggtttggtgaatgtgtatgggatgtgtcctcaggtgggaca
gtctctgggtggcctttccttcagtctctgctccacactttgtctctgta
tttgctcctgtgagtattttgtttccccttctaagaagtacaaaatcacc
cacactttggccttcttccttgagttccatgtggtctgtgaattgtatct
caggtactctgagctttggggctaaaacccacttggcagtgagtgaatac
catgtgtgttcttttgtgactgggttacctgactcaggatgatattttct
agttccatccatttgctcaatagtttcatgaattcattgtttttaatagc
tgagtagtactccattctgtaaatgtaccgcattttctgtatccattccc
ctgttgaggggcatctgggtcctttccagcttctggctattataaacaag
gctgctatgaacatagtgggagcatgtgtcctcctaacaggttggaacat
cttctgaatatatgcccaggaggggtatttgcaggatcctcccatagtac
tatgtctaattttctgaggaaccatccagactgatttccagagtggttgt
ataagcttgcaatcccaccaaca

gaattctctgttaaatcaatatatattactgattgtatattcatttgtaa
gaatatgattcttctatcataaaatatttatatattatagtgttccctca
acagataccaaatatgcctttctgtcaaaagatgagcactaatatatata
tatatgccaatttctctaaagcatataccctagaaatttaagaaatagat
acatctgaataaatatgattatatatgataccaaaatagtactagtaggt
tttgtaaaaaatttacctgaagtacagcttaaaacagaaaacaaagacaa
aaaaatgtaaaaaataattaaaaataatgttagagttttgcagtttaccc
atgcttagagtagatttagcatcacatctgtactgaattaagtctgaatt
ctgattaaatgaagttcagattttcattcaatgatgtttacaacaagcag
gtaataaatctgttttcagtgatgcatacaccagtatagacaaataaata
actcatcaagaaagcaatttatcaaacgctttgctagaagaaattactaa
ttacattatattatgggtttcaaaatcaaataatgagcaattgcaaagtt
aaaagcctttaaacatgaaataattttaaatgttcatttcagaagcttta
aaaccacaggatgggaaagataagtggccagaagcagcacaattcttaat
taatccctcatttgcacacttgaaaagagaatgaaaacagaagttcaaca
ctcctctaacaaaaagaaagagcaatgccccatgacattcaaaatgaatc
tcttgaaaagagaatcccagactcttgaacacatcacactgcagttgttg
gctcaatcatgtcacttccttaaatcttagcagatcaacagagattaatc
agcttcaaaataaaccaataaaacatgatatcctagtggtttggagccct
gagaaatttgctcatggaaaaaatttaagcaatgagaataattattggct
ttcctgtgttaacctcctctaaggcatcttttactgcatctttaaatcca
gcacttggggagagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83772437_83773501
seq2: B6Ng01-308J04.g_67_1132

seq1  GAATTCTCTGTTAAATCAATATATATTACTGATTGTATATTCATTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTAAATCAATATATATTACTGATTGTATATTCATTTGTAA  50

seq1  GAATATGATTCTTCTATCATAAAATATTTATATATTATAGTGTTCCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGATTCTTCTATCATAAAATATTTATATATTATAGTGTTCCCTCA  100

seq1  ACAGATACCAAATATGCCTTTCTGTCAAAAGATGAGCACTAATATATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACCAAATATGCCTTTCTGTCAAAAGATGAGCACTAATATATATA  150

seq1  TATATGCCAATTTCTCTAAAGCATATACCCTAGAAATTTAAGAAATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCAATTTCTCTAAAGCATATACCCTAGAAATTTAAGAAATAGAT  200

seq1  ACATCTGAATAAATATGATTATATATGATACCAAAATAGTACTAGTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAATAAATATGATTATATATGATACCAAAATAGTACTAGTAGGT  250

seq1  TTTGTAAAAAATTTACCTGAAGTACAGCTTAAAACAGAAAACAAAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAAAATTTACCTGAAGTACAGCTTAAAACAGAAAACAAAGACAA  300

seq1  AAAAATGTAAAAAATAATTAAAAATAATGTTAGAGTTTTGCAGTTTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTAAAAAATAATTAAAAATAATGTTAGAGTTTTGCAGTTTACCC  350

seq1  ATGCTTAGAGTAGATTTAGCATCACATCTGTACTGAATTAAGTCTGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGAGTAGATTTAGCATCACATCTGTACTGAATTAAGTCTGAATT  400

seq1  CTGATTAAATGAAGTTCAGATTTTCATTCAATGATGTTTACAACAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAAATGAAGTTCAGATTTTCATTCAATGATGTTTACAACAAGCAG  450

seq1  GTAATAAATCTGTTTTCAGTGATGCATACACCAGTATAGACAAATAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAATCTGTTTTCAGTGATGCATACACCAGTATAGACAAATAAATA  500

seq1  ACTCATCAAGAAAGCAATTTATCAAACGCTTTGCTAGAAGAAATTACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCAAGAAAGCAATTTATCAAACGCTTTGCTAGAAGAAATTACTAA  550

seq1  TTACATTATATTATGGGTTTCAAAATCAAATAATGAGCAATTGCAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTATATTATGGGTTTCAAAATCAAATAATGAGCAATTGCAAAGTT  600

seq1  AAAAGCCTTTAAACATGAAATAATTTTAAATGTTCATTTCAGAAGCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTTTAAACATGAAATAATTTTAAATGTTCATTTCAGAAGCTTTA  650

seq1  AAACCACAGGATGGGAAAGATAAGTGGCCAGAAGCAGCACAATTCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAGGATGGGAAAGATAAGTGGCCAGAAGCAGCACAATTCTTAAT  700

seq1  TAATCCCTCATTTGCACACTTGAAAAGAGAATGAAAACAGAAGTTCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCTCATTTGCACACTTGAAAAGAGAATGAAAACAGAAGTTCAACA  750

seq1  CTCCTCTAACAAAAAGAAAGAGCAATGCCCCATGACATTCAAAATGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTAACAAAAAGAAAGAGCAATGCCCCATGACATTCAAAATGAATC  800

seq1  TCTTGAAAAGAGAATCCCAGACTCTTGAACACATCACACTGCAGTTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAGAGAATCCCAGACTCTTGAACACATCACACTGCAGTTGTTG  850

seq1  GCTCAATCATGTCACTTCCTTAAATCTTAGCAGATCAACAGAGATTAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATCATGTCACTTCCTTAAATCTTAGCAGATCAACAGAGATTAATC  900

seq1  AGCTTCAAAATAAACCAATAAAACATGATATCCTAGTGGTTTGGAG-CCT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCTTCAAAATAAACCAATAAAACATGATATCCTAGTGGTTTGGAGCCCT  950

seq1  GAGAAATTTGCTCATGGAAAAAATTTAAGGCAATGAGATAATTTATTTGG  999
      |||||||||||||||||||||||||||| |||||||||  | ||| ||||
seq2  GAGAAATTTGCTCATGGAAAAAATTTAA-GCAATGAGAATAATTA-TTGG  998

seq1  CTTTCCTGTGTTAA-CTCCTCTAAGGCATCTTTTACTGCATCTTTAATCC  1048
      |||||||||||||| ||||||||||||||||||||||||||||||||  |
seq2  CTTTCCTGTGTTAACCTCCTCTAAGGCATCTTTTACTGCATCTTTAAATC  1048

seq1  CAGCACTT-GGGAGAGTT  1065
      |||||||| |||||||||
seq2  CAGCACTTGGGGAGAGTT  1066


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